Confirmation and Characterization of Non–target site Resistance to Fomesafen in Palmer amaranth (Amaranthus palmeri)

Weed Science ◽  
2018 ◽  
Vol 66 (6) ◽  
pp. 702-709 ◽  
Author(s):  
Vijay K. Varanasi ◽  
Chad Brabham ◽  
Jason K. Norsworthy
Keyword(s):  
Cytochrome P450 ◽  
Cropping Systems ◽  
Palmer Amaranth ◽  
Target Site ◽  
Amaranthus Palmeri ◽  
Allelic Discrimination Assay ◽  
Allelic Discrimination ◽  
First Case ◽  
Target Site Resistance ◽  
Novel Target

AbstractPalmer amaranth (Amaranthus palmeri S. Watson), a dioecious summer annual species, is one of the most troublesome weeds in U.S. cropping systems. The evolution of resistance to protoporphyrinogen oxidase inhibitors in A. palmeri biotypes is a major cause of concern to soybean [Glycine max (L.) Merr.] and cotton (Gossypium hirsutum L.) growers in the midsouthern United States. The objective of this study was to confirm and characterize the non–target site mechanism in a fomesafen-resistant accession from Randolph County, AR (RCA). A dose–response assay was conducted to assess the level of fomesafen resistance, and based on the GR50 values, the RCA accession was 18-fold more resistant to fomesafen than a susceptible (S) biotype. A TaqMan allelic discrimination assay and sequencing of the target-site genes PPX2 and PPX1 revealed no known or novel target-site mutations. An SYBR Green assay indicated no difference in PPX2 gene expression between the RCA and S biotypes. To test whether fomesafen resistance is metabolic in nature, the RCA and the S biotypes were treated with different cytochrome P450 (amitrole, piperonyl butoxide [PBO], malathion) and glutathione S-transferase (GST) (4-chloro-7-nitrobenzofurazan [NBD-Cl]) inhibitors, either alone or in combination with fomesafen. Malathion followed by (fb) fomesafen in RCA showed the greatest reduction in survival (67%) and biomass (86%) compared with fomesafen alone (45% and 66%, respectively) at 2 wk after treatment. Interestingly, NBD-Cl fb fomesafen also resulted in low survival (35%) compared with the fomesafen-only treatment (55%). Applications of malathion or NBD-Cl preceding fomesafen treatment resulted in reversal of fomesafen resistance, indicating the existence of cytochrome P450– and GST-based non–target site mechanisms in the RCA accession. This study confirms the first case of non–target site resistance to fomesafen in A. palmeri.

scholarly journals First confirmation and characterization of target and non-target site resistance to glyphosate in Palmer amaranth ( Amaranthus palmeri ) from Mexico

2017 ◽  
Vol 115 ◽  
pp. 212-218 ◽  
Author(s):  
Jose Alfredo Dominguez-Valenzuela ◽  
Javid Gherekhloo ◽  
Pablo Tomás Fernández-Moreno ◽  
Hugo Enrique Cruz-Hipolito ◽  
Ricardo Alcántara-de la Cruz ◽  
...  
Keyword(s):  
Palmer Amaranth ◽  
Target Site ◽  
Amaranthus Palmeri ◽  
Target Site Resistance

scholarly journals A Statewide Survey of PPO-Inhibitor Resistance and the Prevalent Target-Site Mechanisms in Palmer amaranth (Amaranthus palmeri) Accessions from Arkansas

Weed Science ◽  
2017 ◽  
Vol 66 (2) ◽  
pp. 149-158 ◽  
Author(s):  
Vijay K. Varanasi ◽  
Chad Brabham ◽  
Jason K. Norsworthy ◽  
Haozhen Nie ◽  
Bryan G. Young ◽  
...  
Keyword(s):  
Resistance Mechanism ◽  
Acetolactate Synthase ◽  
Resistance Mechanisms ◽  
Palmer Amaranth ◽  
Target Site ◽  
Evolution Of Resistance ◽  
Target Site Resistance ◽  
Novel Target ◽  
Als Inhibitors ◽  
Inhibitor Resistance

Palmer amaranth is one of the most problematic weeds in the midsouthern United States, and the evolution of resistance to protoporphyrinogen oxidase (PPO) inhibitors in biotypes already resistant to glyphosate and acetolactate synthase (ALS) inhibitors is a major cause of concern to soybean and cotton growers in these states. A late-season weed-escape survey was conducted in the major row crop–producing counties (29 counties) to determine the severity of PPO-inhibitor resistance in Arkansas. A total of 227 Palmer amaranth accessions were sprayed with fomesafen at 395 g ha−1to identify putative resistant plants. A TaqMan qPCR assay was used to confirm the presence of the ΔG210 codon deletion or the R128G/M (homologous to R98 mutation in common ragweed) target-site resistance mechanisms in thePPX2gene. Out of the 227 accessions screened, 44 were completely controlled with fomesafen, and 16 had only one or two severely injured plants (≥98% mortality) when compared with the 1986 susceptible check (100% mortality). The remaining 167 accessions were genotypically screened, and 82 (49%) accessions were found to harbor the ΔG210 deletion in thePPX2gene. The R128G was observed in 47 (28%) out of the 167 accessions screened. The mutation R128M, on the other hand was rare, found in only three accessions. About 13% of the accessions were segregating for both the ΔG210 and R128G mutations. Sixteen percent of the tested accessions had mortality ratings <90% and did not test positive for the ΔG210 or the R128G/M resistance mechanisms, indicating that a novel target or non–target site resistance mechanism is likely. Overall, PPO inhibitor–resistant Palmer amaranth is widespread in Arkansas, and the ΔG210 resistance mechanism is especially dominant in the northeast corridor, while the R128G mutation is more prevalent in counties near Memphis, TN.

scholarly journals Effects of Palmer Amaranth (Amaranthus palmeri) Establishment Time and Distance from the Crop Row on Biological and Phenological Characteristics of the Weed: Implications on Soybean Yield

Weed Science ◽  
2019 ◽  
Vol 67 (1) ◽  
pp. 126-135 ◽  
Author(s):  
Nicholas E. Korres ◽  
Jason K. Norsworthy ◽  
Andy Mauromoustakos
Keyword(s):  
Seed Production ◽  
Weed Management ◽  
Cropping Systems ◽  
Management Strategies ◽  
Palmer Amaranth ◽  
Yield Reduction ◽  
Amaranthus Palmeri ◽  
Soybean Yield ◽  
Management Measures ◽  
Weed Population Dynamics

AbstractInformation about weed biology and weed population dynamics is critical for the development of efficient weed management programs. A field experiment was conducted in Fayetteville, AR, during 2014 and 2015 to examine the effects of Palmer amaranth (Amaranthus palmeriS. Watson) establishment time in relation to soybean [Glycine max(L.) Merr.] emergence and the effects ofA. palmeridistance from the soybean row on the weed’s height, biomass, seed production, and flowering time and on soybean yield. The establishment time factor, in weeks after crop emergence (WAE), was composed of six treatment levels (0, 1, 2, 4, 6, and 8 WAE), whereas the distance from the crop consisted of three treatment levels (0, 24, and 48 cm). Differences inA. palmeribiomass and seed production averaged across distance from the crop were found at 0 and 1 WAE in both years. Establishment time had a significant effect onA. palmeriseed production through greater biomass production and height increases at earlier dates.Amaranthus palmerithat was established with the crop (0 WAE) overtopped soybean at about 7 and 10 WAE in 2014 and 2015, respectively. Distance from the crop affectedA. palmeriheight, biomass, and seed production. The greater the distance from the crop, the higherA. palmeriheight, biomass, and seed production at 0 and 1 WAE compared with other dates (i.e., 2, 4, 6, and 8 WAE).Amaranthus palmeriestablishment time had a significant impact on soybean yield, but distance from the crop did not. The earlierA. palmeriinterfered with soybean (0 and 1 WAE), the greater the crop yield reduction; after that period no significant yield reductions were recorded compared with the rest of the weed establishment times. Knowledge ofA. palmeriresponse, especially at early stages of its life cycle, is important for designing efficient weed management strategies and cropping systems that can enhance crop competitiveness. Control ofA. palmeriwithin the first week after crop emergence or reduced distance between crop and weed are important factors for an effective implementation of weed management measures againstA. palmeriand reduced soybean yield losses due to weed interference.

Evolution of target and non-target based multiple herbicide resistance in a single Palmer amaranth (Amaranthus palmeri) population from Kansas

2020 ◽  
Vol 34 (3) ◽  
pp. 447-453
Author(s):  
Sushila Chaudhari ◽  
Vijay K. Varanasi ◽  
Sridevi Nakka ◽  
Prasanta C. Bhowmik ◽  
Curtis R. Thompson ◽  
...  
Keyword(s):  
Resistance Mechanism ◽  
Acetolactate Synthase ◽  
Palmer Amaranth ◽  
Target Site ◽  
Epsp Synthase ◽  
High Incidence ◽  
Evolution Of Resistance ◽  
Target Site Resistance ◽  
Herbicide Atrazine ◽  
Sites Of Action

AbstractThe evolution of resistance to multiple herbicides in Palmer amaranth is a major challenge for its management. In this study, a Palmer amaranth population from Hutchinson, Kansas (HMR), was characterized for resistance to inhibitors of photosystem II (PSII) (e.g., atrazine), acetolactate synthase (ALS) (e.g., chlorsulfuron), and EPSP synthase (EPSPS) (e.g., glyphosate), and this resistance was investigated. About 100 HMR plants were treated with field-recommended doses (1×) of atrazine, chlorsulfuron, and glyphosate, separately along with Hutchinson multiple-herbicide (atrazine, chlorsulfuron, and glyphosate)–susceptible (HMS) Palmer amaranth as control. The mechanism of resistance to these herbicides was investigated by sequencing or amplifying the psbA, ALS, and EPSPS genes, the molecular targets of atrazine, chlorsulfuron, and glyphosate, respectively. Fifty-two percent of plants survived a 1× (2,240 g ai ha−1) atrazine application with no known psbA gene mutation, indicating the predominance of a non–target site resistance mechanism to this herbicide. Forty-two percent of plants survived a 1× (18 g ai ha−1) dose of chlorsulfuron with proline197serine, proline197threonine, proline197alanine, and proline197asparagine, or tryptophan574leucine mutations in the ALS gene. About 40% of the plants survived a 1× (840 g ae ha−1) dose of glyphosate with no known mutations in the EPSPS gene. Quantitative PCR results revealed increased EPSPS copy number (50 to 140) as the mechanism of glyphosate resistance in the survivors. The most important finding of this study was the evolution of resistance to at least two sites of action (SOAs) (~50% of plants) and to all three herbicides due to target site as well as non–target site mechanisms. The high incidence of individual plants with resistance to multiple SOAs poses a challenge for effective management of this weed.

Use of AFLP Markers to Assess Genetic Diversity in Palmer Amaranth (Amaranthus palmeri) Populations from North Carolina and Georgia

Weed Science ◽  
2013 ◽  
Vol 61 (1) ◽  
pp. 136-145 ◽  
Author(s):  
Aman Chandi ◽  
Susana R. Milla-Lewis ◽  
David L. Jordan ◽  
Alan C. York ◽  
James D. Burton ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
North Carolina ◽  
Total Variation ◽  
Significant Variation ◽  
Cropping Systems ◽  
Geographic Region ◽  
Palmer Amaranth ◽  
Aflp Markers ◽  
Amaranthus Palmeri ◽  
Management Approaches

Glyphosate-resistant Palmer amaranth is a serious problem in southern cropping systems. Much phenotypic variation is observed in Palmer amaranth populations with respect to plant growth and development and susceptibility to herbicides. This may be related to levels of genetic diversity existing in populations. Knowledge of genetic diversity in populations of Palmer amaranth may be useful in understanding distribution and development of herbicide resistance. Research was conducted to assess genetic diversity among and within eight Palmer amaranth populations collected from North Carolina and Georgia using amplified fragment length polymorphism (AFLP) markers. Pair-wise genetic similarity (GS) values were found to be relatively low, averaging 0.34. The highest and the lowest GS between populations were 0.49 and 0.24, respectively, while the highest and the lowest GS within populations were 0.56 and 0.36, respectively. Cluster and principal coordinate (PCO) analyses grouped individuals mostly by population (localized geographic region) irrespective of response to glyphosate or gender of individuals. Analysis of molecular variance (AMOVA) results when populations were nested within states revealed significant variation among and within populations within states while variation among states was not significant. Variation among and within populations within state accounted for 19 and 77% of the total variation, respectively, while variation among states accounted for only 3% of the total variation. The within population contribution towards total variation was always higher than among states and among populations within states irrespective of response to glyphosate or gender of individuals. These results are significant in terms of efficacy of similar management approaches both in terms of chemical and biological control in different areas infested with Palmer amaranth.

scholarly journals Target-Site Resistance to Glyphosate in Chloris Virgata Biotypes and Alternative Herbicide Options for its Control

Agronomy ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 1266
Author(s):  
Het Samir Desai ◽  
Michael Thompson ◽  
Bhagirath Singh Chauhan
Keyword(s):  
Glyphosate Resistance ◽  
Target Site ◽  
Site Mutation ◽  
Glufosinate Ammonium ◽  
Epsps Gene ◽  
First Case ◽  
Target Site Resistance ◽  
Chloris Virgata ◽  
Moderately Resistant ◽  
Dose Response Study

Due to the overdependence on glyphosate to manage weeds in fallow conditions, glyphosate resistance has developed in various biotypes of several grass weeds, including Chloris virgata Sw. The first case of glyphosate resistance in C. virgata was found in 2015 in Australia, and since then several cases have been confirmed in several biotypes across Australia. Pot studies were conducted with 10 biotypes of C. virgata to determine glyphosate resistance levels. The biotypes were identified as either susceptible, moderately resistant or highly resistant based on the glyphosate dose required to kill 50% of plants. Two glyphosate-susceptible (GS) and two glyphosate-resistant (GR) biotypes were identified by the dose-response study and analyzed for the presence of target-site mutation in the 5–enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene. Performance of alternative herbicides to glyphosate as well as the double-knock herbicide approach was evaluated on the two GS (Ch and SGM2) and two GR (SGW2 and CP2) biotypes. Three herbicides, clethodim, haloxyfop and paraquat, were found to be effective (100% control) against all four biotypes when applied at the 4–5 leaf stage. All the sequential herbicide treatments, such as glyphosate followed by paraquat and glufosinate-ammonium followed by paraquat, provided 100% control of all four biotypes of C. virgata. This study identified effective herbicide options for the control of GR C. virgata and showed that target-site mutations were involved in the resistance of two biotypes to glyphosate (SGW2 and CP2). Results could aid farmers in selecting herbicides to manage C. virgata in their fields.

scholarly journals Evolution of Target-Site Resistance to Glyphosate in an Amaranthus palmeri Population from Argentina and Its Expression at Different Plant Growth Temperatures

Plants ◽  
2019 ◽  
Vol 8 (11) ◽  
pp. 512 ◽  
Author(s):  
Kaundun ◽  
Jackson ◽  
Hutchings ◽  
Galloway ◽  
Marchegiani ◽  
...  
Keyword(s):  
Fold Increase ◽  
Glyphosate Resistance ◽  
Target Site ◽  
Amaranthus Palmeri ◽  
Site Mutation ◽  
Medium Temperature ◽  
Soybean Field ◽  
Over Expression ◽  
Target Site Resistance ◽  
The Difference

The mechanism and expression of resistance to glyphosate at different plant growing temperatures was investigated in an Amaranthus palmeri population (VM1) from a soybean field in Vicuña Mackenna, Cordoba, Argentina. Resistance was not due to reduced glyphosate translocation to the meristem or to EPSPS duplication, as reported for most US samples. In contrast, a proline 106 to serine target-site mutation acting additively with EPSPS over-expression (1.8-fold increase) was respectively a major and minor contributor to glyphosate resistance in VM1. Resistance indices based on LD50 values generated using progenies from a cross between 52 PS106 VM1 individuals were estimated at 7.1 for homozygous SS106 and 4.3 for heterozygous PS106 compared with homozygous wild PP106 plants grown at a medium temperature of 24 °C day/18 °C night. A larger proportion of wild and mutant progenies survived a single commonly employed glyphosate rate when maintained at 30 °C day/26 °C night compared with 20 °C day/16 night in a subsequent experiment. Interestingly, the P106S mutation was not identified in any of the 920 plants analysed from 115 US populations, thereby potentially reflecting the difference in A. palmeri control practices in Argentina and USA.

Control of Protoporphyrinogen Oxidase Inhibiting Herbicide Resistant and Susceptible Palmer Amaranth (Amaranthus palmeri) with Soil-Applied Protoporphyrinogen Oxidase–Inhibiting Herbicides

2017 ◽  
Vol 32 (1) ◽  
pp. 95-100 ◽  
Author(s):  
Alinna M. Umphres ◽  
Lawrence E. Steckel ◽  
Thomas C. Mueller
Keyword(s):  
Cropping Systems ◽  
The United States ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Relative Resistance ◽  
Complete Control ◽  
Protoporphyrinogen Oxidase ◽  
Herbicide Resistant ◽  
Herbicide Treatments ◽  
Selection For

AbstractPalmer amaranth resistance to protoporphyrinogen oxidase (PPO)-inhibiting herbicides has become an increasing problem to producers throughout the southeast region of the United States. Traditionally, these herbicides can be used as foliar-applied and soil-applied in glyphosate resistant (GR) cropping systems to control GR Palmer amaranth. Heavy reliance on PPO herbicides has contributed to the increased selection for PPO inhibitor-resistant (PPO-R) Palmer amaranth biotypes. Dose response greenhouse research was conducted to evaluate the efficacy of soil-applied flumioxazin, fomesafen, saflufenacil and sulfentrazone on a known susceptible (S) and resistant (R) Palmer amaranth biotype. Both R and S populations reached maximum germination at 14 d after treatment (DAT). The data from this study suggests complete control (100%) was achieved for the S biotype at 35 d after treatment (DAT) with all herbicides. The R biotype showed difference among herbicide treatments with flumioxazin and saflufenacil having similar responses in control and fomesafen and sulfentrazone resulting in less control of the R Palmer amaranth biotypes. The calculated relative resistance factor ranged from 3.5 to 6.0, and averaged 5X for the four herbicides. This research indicated that the PPO-R population was still responsive to all tested herbicides, but a low level of resistance was present.

scholarly journals Mechanism of atrazine resistance in atrazine- and HPPD inhibitor-resistant Palmer amaranth (Amaranthus palmeri S. Wats.) from Nebraska

2019 ◽  
Vol 99 (6) ◽  
pp. 815-823 ◽  
Author(s):  
Parminder S. Chahal ◽  
Mithila Jugulam ◽  
Amit J. Jhala
Keyword(s):  
The United States ◽  
Palmer Amaranth ◽  
Target Site ◽  
Cytochrome P450 Monooxygenases ◽  
Amaranthus Palmeri ◽  
Weed Species ◽  
Corn Production ◽  
Agronomic Crops ◽  
P450 Monooxygenases ◽  
Atrazine Resistance

Palmer amaranth (Amaranthus palmeri S. Wats.) is one of the most problematic weed species in agronomic crops in the United States. A Palmer amaranth biotype multiple-resistant to atrazine and 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitors was reported in a seed corn production field in Nebraska. Rapid detoxification mediated by cytochrome P450 monooxygenases and increased HPPD gene expression were reported as the mechanisms of mesotrione resistance in atrazine- and HPPD inhibitor-resistant Palmer amaranth biotype from Nebraska; however, the mechanism of atrazine resistance is unknown. The objectives of this study were to investigate target site or non-target site based mechanisms conferring atrazine resistance in Palmer amaranth from Nebraska. 14C-atrazine absorption and translocation studies revealed that reduced atrazine absorption or translocation were not involved as one of the mechanisms of atrazine resistance. Instead, greater 14C-atrazine absorption and recovery in treated leaves were observed in resistant compared with susceptible Palmer amaranth. No known mutations including Ser264Gly substitution in the psbA gene causing target site based atrazine resistance were observed. However, the parent 14C-atrazine was metabolized rapidly <4 h after treatment in resistant plants, conferring enhanced atrazine metabolism as the mechanism of resistance.

scholarly journals Palmer Amaranth (Amaranthus palmeri): A Review

2013 ◽  
Vol 27 (1) ◽  
pp. 12-27 ◽  
Author(s):  
Sarah M. Ward ◽  
Theodore M. Webster ◽  
Larry E. Steckel
Keyword(s):  
Cropping Systems ◽  
Palmer Amaranth ◽  
Current Status ◽  
Amaranthus Palmeri ◽  
Future Directions ◽  
High Fecundity ◽  
Agricultural Impacts ◽  
Adverse Conditions ◽  
Current State ◽  
Rapid Growth Rate

In little over 20 yr, Palmer amaranth has risen from relative obscurity to its current status as one of the most widespread, troublesome, and economically damaging agronomic weeds in the southeastern U.S. Numerous factors have enabled Palmer amaranth to become such a dominant and difficult-to-control weed, including its rapid growth rate, high fecundity, genetic diversity, ability to tolerate adverse conditions, and its facility for evolving herbicide resistance. It is both a serious threat to several U.S. cropping systems and a fascinating model weed. In this paper, we review the growing body of literature on Palmer amaranth to summarize the current state of knowledge on the biology, agricultural impacts, and management of this weed, and we suggest future directions for research.

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