scholarly journals Plasmon Rulers as a Probe for Real-Time Microsecond Conformational Dynamics of Single Molecules

Nano Letters ◽  
2018 ◽  
Vol 18 (12) ◽  
pp. 7927-7934 ◽  
Author(s):  
Emiel W.A. Visser ◽  
Matěj Horáček ◽  
Peter Zijlstra
Keyword(s):  
Real Time ◽  
Conformational Dynamics ◽  
Single Molecules ◽  
Plasmon Rulers

scholarly journals Structural dynamics determine voltage and pH gating in human voltage-gated proton channel

2021 ◽  
Author(s):  
Shuo Han ◽  
Sophia Peng ◽  
Joshua Vance ◽  
Kimberly Tran ◽  
Nhu Do ◽  
...  
Keyword(s):  
Ion Channels ◽  
Real Time ◽  
Conformational Dynamics ◽  
Conformational Transitions ◽  
Extracellular Ph ◽  
Voltage Sensors ◽  
Voltage Gated ◽  
Voltage Gated Ion Channels ◽  
S4 Segment ◽  
Gated Ion Channels

AbstractVoltage-gated ion channels are key players of electrical signaling in cells. As a unique subfamily, voltage-gated proton (Hv) channels are standalone voltage sensors without separate ion conductive pores. They are gated by both voltage and transmembrane proton gradient (i.e ΔpH), serving as acid extruders in most cells. Amongst their many functions, Hv channels are known to regulate the intracellular pH of human spermatozoa and compensate for the charge and pH imbalances caused by NADPH oxidases in phagocytes. Like the canonical voltage sensors, the Hv channel is a bundle of 4 helices (named S1 through S4), with the S4 segment carrying 3 positively charged Arg residues. Extensive structural and electrophysiological studies on voltage-gated ion channels generally agree on an outwards movement of the S4 segment upon activating voltage, but the real time conformational transitions are still unattainable. With purified human voltage-gated proton (hHv1) channel reconstituted in liposomes, we have examined its conformational dynamics at different voltage and pHs using the single molecule fluorescence resonance energy transfer (smFRET). Here we provided the first glimpse of real time conformational trajectories of the hHv1 voltage sensor and showed that both voltage and pH gradient shift the conformational dynamics of the S4 segment to control channel gating. Our results suggested the biological gating is determined by the conformational distributions of the hHv1 voltage sensor, rather than the conformational transitions between the presumptive ‘resting’ and ‘activated’ conformations. We further identified H140 as the key residue sensing extracellular pH and showed that both the intracellular and extracellular pH sensors act on the voltage sensing S4 segment to enrich the resting conformations. Taken together, we proposed a model that explains the mechanisms underlying voltage and pH gating in Hv channels, which may also serve as a general framework to understand the voltage sensing and gating in other voltage-gated ion channels.

Real-time Observation of Conformational Dynamics in Peptide Folding

2002 ◽  
Author(s):  
W. Zinth ◽  
S. Spörlein ◽  
H. Carstens ◽  
C. Renner ◽  
R. Behrendt ◽  
...  
Keyword(s):  
Real Time ◽  
Conformational Dynamics ◽  
Peptide Folding ◽  
Time Observation ◽  
Real Time Observation

scholarly journals Real-Time Monitoring of Formation and Dynamics of Intra- and Interchain Phases in Single Molecules of Polyfluorene

ACS Nano ◽  
2020 ◽  
Vol 14 (11) ◽  
pp. 16096-16104
Author(s):  
Tzu-Wei Tseng ◽  
Hao Yan ◽  
Tomonori Nakamura ◽  
Shun Omagari ◽  
Ji-Seon Kim ◽  
...  
Keyword(s):  
Real Time ◽  
Single Molecules ◽  
Real Time Monitoring

scholarly journals Real-time observation of the conformational dynamics of mitochondrial Hsp70 by spFRET

2013 ◽  
Vol 32 (11) ◽  
pp. 1639-1649 ◽  
Author(s):  
Martin Sikor ◽  
Koyeli Mapa ◽  
Lena Voith von Voithenberg ◽  
Dejana Mokranjac ◽  
Don C Lamb
Keyword(s):  
Real Time ◽  
Conformational Dynamics ◽  
Time Observation ◽  
Mitochondrial Hsp70 ◽  
Real Time Observation

Real-time studies of conformational dynamics of the repair enzyme E. coli formamidopyrimidine-DNA glycosylase and its DNA complexes during catalytic cycle

2010 ◽  
Vol 685 (1-2) ◽  
pp. 3-10 ◽  
Author(s):  
Vladimir V. Koval ◽  
Nikita A. Kuznetsov ◽  
Alexander A. Ishchenko ◽  
Murat K. Saparbaev ◽  
Olga S. Fedorova
Keyword(s):  
Real Time ◽  
Conformational Dynamics ◽  
Catalytic Cycle ◽  
Dna Glycosylase ◽  
Dna Complexes ◽  
Repair Enzyme ◽  
E Coli

scholarly journals Reversible Aptamer-Au Plasmon Rulers for Secreted Single Molecules

Nano Letters ◽  
2015 ◽  
Vol 15 (7) ◽  
pp. 4564-4570 ◽  
Author(s):  
Somin Eunice Lee ◽  
Qian Chen ◽  
Ramray Bhat ◽  
Shayne Petkiewicz ◽  
Jessica M. Smith ◽  
...  
Keyword(s):  
Single Molecules ◽  
Plasmon Rulers
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