Translational Diffusion Constants of the Amino Acids:  Measurement by NMR and Their Use in Modeling the Transport of Peptides

2007 ◽  
Vol 111 (8) ◽  
pp. 1452-1455 ◽  
Author(s):  
Markus W. Germann ◽  
Tierre Turner ◽  
Stuart A. Allison
1977 ◽  
Author(s):  
E. Serrallach ◽  
W. Känzig ◽  
V. Hofmann ◽  
P.W. Straub ◽  
M. Zulauf

The intriguing diversity of published translational diffusion constants for the fibrinogen molecule can hardly be explained, unless interactions between the molecules are postulated. In the present study we have investigated the possible effect of molecular association and electrostatic intermolecular interactions on the Brownian motion. The translational diffusion coefficient DT, the rotational diffusion coefficient around the minor axis DR and the sedimentation coefficient have been measured. The methods used were dynamic light scattering and analytical ultracentrifugation. The samples were solutions of purified human fibrinogen. The correlation-function corresponding to DT deviates from a single exponential. The initial slope is found to depend on concentration, being DT = (1.7 ± 0.3) 10-7 cm2/s at 10mg/ml, pH 7.4 and 0.15 molar Tris-NaCl, and increases at fibrinogen concentrations below 2mg/ml. These results are compatible with a polydispers solution, in which single molecules are in equilibrium with pair and higher aggregates. The nature of the aggregates is end-to-end as indicated from the difference between the two rotational diffusion constants DR = 40000 ± 20% and DR = 10000 ±30% s-1. On the basis of the Hall-Slayter model and assumption of end-to-end association we calculated the ratio of the sedimentation coefficient of single, pair and triplet associates, being 1:1.14:1.20. Therefore, it is difficult to separate them in a sedimentation run. For ionic strength below 0.05 molar and low fibrinogen concentration (0.lmg/ml) a fast decay appears in the correlation, indicating that the Brownian motion is strongly influenced by electrostatic interactions.


1995 ◽  
Vol 33 (13) ◽  
pp. S107-S113 ◽  
Author(s):  
Susan A. Fawthrop ◽  
Duncan G. Gillies ◽  
Leslie H. Sutcliffe ◽  
Mark R. Symms

1989 ◽  
Vol 109 (6) ◽  
pp. 3325-3331 ◽  
Author(s):  
W F Wade ◽  
J H Freed ◽  
M Edidin

Site-directed mutagenesis in vitro was used to introduce stop codons in the genomic DNA of the alpha and beta chains of the murine class II major histocompatibility complex antigen, I-Ak. Mutated DNA was transfected into B lymphoma cells that were then selected by neomycin resistance and for their ability to express I-Ak molecules on their plasma membrane. The translational diffusion coefficient (Dlat) of I-Ak molecules composed of a wild-type beta chain paired with an alpha chain missing either 6 or 12 amino acids from the cytoplasmic domain is on the average threefold higher than the Dlat of wild-type I-Ak molecules as measured by fluorescence photobleaching and recovery. The removal of 12 amino acids from the cytoplasmic domain of the beta chain did not change the Dlat value from that of wild-type I-Ak if the truncated beta chain was paired with a wild-type alpha chain. Removing all amino acids of the cytoplasmic domains of both the alpha and beta chains resulted in a 10-fold increase in the Dlat, the highest value for any of the truncated I-Ak molecules tested. These data indicate that the carboxy-terminal six amino acids of the cytoplasmic domain of the alpha chain and the six plasma membrane-proximal amino acids of the beta chain are important in constraining the translational diffusion of I-Ak molecules in the plasma membrane.


1937 ◽  
Vol 31 (10) ◽  
pp. 1903-1912 ◽  
Author(s):  
Alfred Polson

1995 ◽  
Vol 91 (5) ◽  
pp. 887 ◽  
Author(s):  
Caroline A. Beadle ◽  
Duncan G. Gillies ◽  
Leslie H. Sutcliffe ◽  
Xiaoping Wu

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