Determining Peptide Sequence Effects That Control the Size, Structure, and Function of Nanoparticles

Free loosely bound and tightly bound polyribosomes were separated from rat liver homogenate by salt extraction followed by differential centrifugation, and several of their structural and functional properties were compared to resolve the existence of loosely bound polyribosomes and verify the specificity of the separation. The free and loosely bound polyribosomes have similar sedimentation profiles and polyribosome contents, their subunit proteins have similar electrophoretic patterns and their products of protein synthesis in vitro show a close correspondence in size and amounts synthesized. In contrast, the tightly bound polyribosomes have different properties from those of the free and loosely bound polyribosomes; their average size is significantly smaller; their polyribosome content is higher; their 60 S-subunit proteins lack two components and contain four or more components not found elsewhere; their products of protein synthesis in vitro differ in size and amounts synthesized. These observations show that rat liver membranes entrap a large fraction of the free polyribosomes at low salt concentrations and that these polyribosomes are similar to those of the free-polyribosome fraction and are different from those of the tightly bound polyribosome fraction in size, structure and function.

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Complex Analyses of Plankton Structure and Function

The Scientific World JOURNAL ◽

10.1100/tsw.2001.19 ◽

2001 ◽

Vol 1 ◽

pp. 119-132 ◽

Cited By ~ 4

Author(s):

Karl E. Havens

Keyword(s):

Size Structure ◽

Experimental Studies ◽

Structure And Function ◽

Size Spectrum ◽

Phytoplankton Productivity ◽

Resource Managers ◽

Carbon Transfer ◽

And Function ◽

Freshwater Plankton ◽

Plankton Communities

This paper critically evaluates some complex methods that have been used to characterize the structure and function of freshwater plankton communities. The focus is on methods related to plankton size structure and carbon transfer. The specific methods reviewed are 1) size spectrum analysis, 2) size-fractionated phytoplankton productivity, 3) size-fractionated zooplankton grazing, 4) plankton ecological transfer efficiency, and 5) grazer effects on phytoplankton community structure. Taken together, these methods can provide information on community ecological properties that are directly related to practical issues including water quality and fisheries productivity. However, caution is warranted since application without a complete understanding of assumptions and context of the manipulations could lead to erroneous conclusions. As an example, experimental studies involving the addition or removal of zooplankton, especially when coupled with nutrient addition treatments, could provide information on the degree of consumer vs. resource control of phytoplankton. Resource managers subsequently could use this information in developing effective measures for controlling nuisance algal biomass. However, the experiments must be done critically and with sufficient safeguards and other measurements to ensure that treatments (e.g., zooplankton exclosure by screening of water) actually are successful and do not introduce other changes in the community (e.g., removal of large algae). In all of the methods described here, the investigator must take care when generalizing results and, in particular, carry out a sufficient number of replications to encompass both the major seasonal and spatial variation that occurs in the ecosystem.

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The Mobilome of Reptiles: Evolution, Structure, and Function

Cytogenetic and Genome Research ◽

10.1159/000496416 ◽

2019 ◽

Vol 157 (1-2) ◽

pp. 21-33 ◽

Cited By ~ 3

Author(s):

Stéphane Boissinot ◽

Yann Bourgeois ◽

Joseph D. Manthey ◽

Robert P. Ruggiero

Keyword(s):

Gene Flow ◽

Transposable Elements ◽

Genome Size ◽

Local Adaptation ◽

Size Structure ◽

Structure And Function ◽

Genomic Diversity ◽

Genomic Features ◽

And Function

Transposable elements (TE) constitute one of the most variable genomic features among vertebrates, impacting genome size, structure, and composition. Despite their important role in shaping genomic diversity, they have mostly been studied in mammals, which display one of the least diverse genomes in terms of TE diversity. Recent new resources in reptilian genomics have opened a broader perspective about TE evolution in amniotes. We discuss these recent results by showing that TE diversity is high in reptiles, particularly in squamates, with strong heterogeneity in the number of TE classes retained in each lineage, even at short evolutionary scales. More research is needed to uncover the exact mechanisms that regulate TE proliferation in reptiles and to what extent these selfish elements can play a role in local adaptation or in the emergence of barriers to gene flow.

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The Effect of Shear Stress on the Size, Structure, and Function of Human von Willebrand Factor

Artificial Organs ◽

10.1111/aor.12382 ◽

2014 ◽

Vol 38 (9) ◽

pp. 741-750 ◽

Cited By ~ 29

Author(s):

Chris Hoi Houng Chan ◽

Ina Laura Pieper ◽

Scott Fleming ◽

Yasmin Friedmann ◽

Graham Foster ◽

...

Keyword(s):

Shear Stress ◽

Von Willebrand Factor ◽

Size Structure ◽

Structure And Function ◽

And Function ◽

Von Willebrand ◽

Willebrand Factor

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Differences in intestinal size, structure, and function contributing to feed efficiency in broiler chickens reared at geographically distant locations

Poultry Science ◽

10.3382/ps/pex332 ◽

2018 ◽

Vol 97 (2) ◽

pp. 578-591 ◽

Cited By ~ 10

Author(s):

B.U. Metzler-Zebeli ◽

E. Magowan ◽

M. Hollmann ◽

M.E.E. Ball ◽

A. Molnár ◽

...

Keyword(s):

Feed Efficiency ◽

Broiler Chickens ◽

Size Structure ◽

Structure And Function ◽

And Function

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Structural and functional complexity of vocalizations in a cooperatively breeding passerine, Jungle Babbler

10.1101/2020.04.23.056879 ◽

2020 ◽

Author(s):

Soniya Devi Yambem ◽

Sonam Chorol ◽

Manjari Jain

Keyword(s):

Social Complexity ◽

Size Structure ◽

Structure And Function ◽

Repertoire Size ◽

Call Structure ◽

The Social ◽

Cooperatively Breeding ◽

Complexity Hypothesis ◽

And Function ◽

Functionally Diverse

AbstractAnimal vocal communication ranges from simple to complex based on repertoire size, structure, and composition of calls and the information encoded in them. According to the social complexity hypothesis, communication complexity tends to increase with an increase in social complexity. While several studies on mammalian systems exist supporting this, evidence from avian systems is comparatively limited. Towards this, we present evidence for complex acoustic communication in a cooperatively breeding passerine, Jungle Babbler, based on three aspects of complexity: an extensive repertoire of acoustically-distinct calls, within-call structural complexity and the diverse behavioural contexts in which these calls are used. Jungle Babblers were found to possess a structurally and functionally diverse vocal repertoire comprising 15 different calls. Detailed acoustic analyses of multisyllabic calls revealed that these calls are composed of different notes. Further, despite a large number of notes present in the repertoire, the number of calls were limited to 15. This implies that there may be underlying rules that determine call composition to give rise to functional calls to which receivers respond. We also found that these calls were produced in a variety of affiliative and agonistic contexts and were employed towards coordination of diverse social behaviours including group movement, foraging, brood care, aggression and vigilance. Yet, 7 out of 15 vocalizations were produced in the context of vigilance. This disproportionate investment of vocalizations towards co-ordinated acoustic vigilance is characteristic of many cooperatively breeding birds. Our study extends support for the social complexity hypothesis and also lays the foundation for future investigations on combinatorial and syntactical rules underlying call structure and function in bird vocalizations.Significance statementStudies on vocal complexity in birds have focussed mainly on repertoire size, structure and function. However, fine temporal and spectral features of elements that constitute a call/song are rarely examined to evaluate vocal complexity. We examined complex communication in a cooperatively breeding social passerine, Jungle Babbler for which we assessed repertoire size, function, acoustic features of calls and of their constituent elements. Jungle Babblers were found to possess a structurally and functionally diverse vocal repertoire comprising of 15 calls, 46% of which were in the context of vigilance, thereby extending support to the social complexity hypothesis. We also found that several calls were composed of multiple, acoustically distinct notes. These findings will be foundational in understanding the interrelations between sociality and communicative complexity and underlying combinatorial rules that determine call structure and function.

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Structure and function of neural networks in the retina

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100102213 ◽

1988 ◽

Vol 46 ◽

pp. 26-27

Author(s):

Peter Sterling

Keyword(s):

Ganglion Cells ◽

Three Dimensional ◽

Structure And Function ◽

Synaptic Connections ◽

Visual Axis ◽

One Dimensional ◽

Cat Retina ◽

Ultrathin Sections ◽

And Function ◽

Insight Into

The synaptic connections in cat retina that link photoreceptors to ganglion cells have been analyzed quantitatively. Our approach has been to prepare serial, ultrathin sections and photograph en montage at low magnification (˜2000X) in the electron microscope. Six series, 100-300 sections long, have been prepared over the last decade. They derive from different cats but always from the same region of retina, about one degree from the center of the visual axis. The material has been analyzed by reconstructing adjacent neurons in each array and then identifying systematically the synaptic connections between arrays. Most reconstructions were done manually by tracing the outlines of processes in successive sections onto acetate sheets aligned on a cartoonist's jig. The tracings were then digitized, stacked by computer, and printed with the hidden lines removed. The results have provided rather than the usual one-dimensional account of pathways, a three-dimensional account of circuits. From this has emerged insight into the functional architecture.

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Osseointegration interface of calcified bone and endosseous implants

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100130110 ◽

1992 ◽

Vol 50 (2) ◽

pp. 1096-1097

Author(s):

K.E. Krizan ◽

J.E. Laffoon ◽

M.J. Buckley

Keyword(s):

Structure And Function ◽

Titanium Implants ◽

En Bloc ◽

Endosseous Implants ◽

Ultrastructural Studies ◽

The Past ◽

Cacodylate Buffer ◽

One Year ◽

And Function

With increase use of tissue-integrated prostheses in recent years it is a goal to understand what is happening at the interface between haversion bone and bulk metal. This study uses electron microscopy (EM) techniques to establish parameters for osseointegration (structure and function between bone and nonload-carrying implants) in an animal model. In the past the interface has been evaluated extensively with light microscopy methods. Today researchers are using the EM for ultrastructural studies of the bone tissue and implant responses to an in vivo environment. Under general anesthesia nine adult mongrel dogs received three Brånemark (Nobelpharma) 3.75 × 7 mm titanium implants surgical placed in their left zygomatic arch. After a one year healing period the animals were injected with a routine bone marker (oxytetracycline), euthanized and perfused via aortic cannulation with 3% glutaraldehyde in 0.1M cacodylate buffer pH 7.2. Implants were retrieved en bloc, harvest radiographs made (Fig. 1), and routinely embedded in plastic. Tissue and implants were cut into 300 micron thick wafers, longitudinally to the implant with an Isomet saw and diamond wafering blade [Beuhler] until the center of the implant was reached.

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Use of human autoantibodies and immunoelectron microscopy to study structure and function of the nucleolus and nuclear bodies

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100122939 ◽

1992 ◽

Vol 50 (1) ◽

pp. 506-507

Author(s):

Robert L. Ochs

Keyword(s):

Electron Microscopy ◽

Structure And Function ◽

Nuclear Bodies ◽

Nuclear Interior ◽

Coiled Bodies ◽

Interchromatin Granules ◽

And Function ◽

Conventional Electron Microscopy ◽

Perichromatin Granules ◽

Perichromatin Fibrils

By conventional electron microscopy, the formed elements of the nuclear interior include the nucleolus, chromatin, interchromatin granules, perichromatin granules, perichromatin fibrils, and various types of nuclear bodies (Figs. 1a-c). Of these structures, all have been reasonably well characterized structurally and functionally except for nuclear bodies. The most common types of nuclear bodies are simple nuclear bodies and coiled bodies (Figs. 1a,c). Since nuclear bodies are small in size (0.2-1.0 μm in diameter) and infrequent in number, they are often overlooked or simply not observed in any random thin section. The rat liver hepatocyte in Fig. 1b is a case in point. Historically, nuclear bodies are more prominent in hyperactive cells, they often occur in proximity to nucleoli (Fig. 1c), and sometimes they are observed to “bud off” from the nucleolar surface.

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Depletion and Reconstitution of Active E. Coli Ribosomes

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100116826 ◽

1975 ◽

Vol 33 ◽

pp. 640-641

Author(s):

M. Boublik ◽

W. Hellmann ◽

F. Jenkins

Keyword(s):

Protein Biosynthesis ◽

Large Subunit ◽

High Resolution Electron Microscopy ◽

Small Subunit ◽

Structure And Function ◽

Biologically Active ◽

Biological Macromolecules ◽

E Coli ◽

Resolution Electron ◽

And Function

Correlations between structure and function of biological macromolecules have been studied intensively for many years, mostly by indirect methods. High resolution electron microscopy is a unique tool which can provide such information directly by comparing the conformation of biopolymers in their biologically active and inactive state. We have correlated the structure and function of ribosomes, ribonucleoprotein particles which are the site of protein biosynthesis. 70S E. coli ribosomes, used in this experiment, are composed of two subunits - large (50S) and small (30S). The large subunit consists of 34 proteins and two different ribonucleic acid molecules. The small subunit contains 21 proteins and one RNA molecule. All proteins (with the exception of L7 and L12) are present in one copy per ribosome.This study deals with the changes in the fine structure of E. coli ribosomes depleted of proteins L7 and L12. These proteins are unique in many aspects.

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