scholarly journals Mutation screening and imprinting analysis of four candidate genes for autism in the 7q32 region

2002 ◽  
Vol 7 (3) ◽  
pp. 289-301 ◽  
Author(s):  
E Bonora ◽  
◽  
E Bacchelli ◽  
E R Levy ◽  
F Blasi ◽  
...  
2016 ◽  
Vol 137 (3) ◽  
pp. 952-961 ◽  
Author(s):  
Xiaoqian Ye ◽  
Audrey Guilmatre ◽  
Boris Reva ◽  
Inga Peter ◽  
Yann Heuzé ◽  
...  

2007 ◽  
Vol 05 (06) ◽  
pp. 1155-1172 ◽  
Author(s):  
BRIAN M. O'LEARY ◽  
STEVEN G. DAVIS ◽  
MICHAEL F. SMITH ◽  
BARTLEY BROWN ◽  
MATHEW B. KEMP ◽  
...  

When searching for disease-causing mutations with polymerase chain reaction (PCR)-based methods, candidate genes are usually screened in their entirety, exon by exon. Genomic resources (i.e. www.ncbi.nih.gov, www.ensembl.org, and genome.ucsc.edu) largely support this paradigm for mutation screening by making it easy to view and access sequence data associated with genes in their genomic context. However, the administrative burden of conducting mutation screening in potentially hundreds of genes and thousands of exons in thousands of patients is significant, even with the use of public genome resources. For example, the manual design of oligonucleotide primers for all exons of the 10 Leber's congenital amaurosis (LCA) genes (149 exons) represents a significant information management challenge. The Transcript Annotation Prioritization and Screening System (TrAPSS) is designed to accelerate mutation screening by (1) providing a gene-based local cache of candidate disease genes in a genomic context, (2) automating tasks associated with optimizing candidate disease gene screening and information management, and (3) providing the implementation of an algorithmic technique to utilize large amounts of heterogeneous genome annotation (e.g. conserved protein functional domains) so as to prioritize candidate genes.


2009 ◽  
Vol 31 (1) ◽  
pp. 43-49
Author(s):  
Feng-Xiao BU ◽  
Yu PENG ◽  
Shu-Hui WANG ◽  
Qiong PAN ◽  
Zheng-Mao HU ◽  
...  

2020 ◽  
Vol 40 (3) ◽  
pp. 271-280 ◽  
Author(s):  
Fang Liu ◽  
Junwen Wang ◽  
Yiqiao Xing ◽  
Tuo Li

2015 ◽  
Vol 18 (4) ◽  
pp. 393-398 ◽  
Author(s):  
Tanwei Wei ◽  
Hui Sun ◽  
Bo Hu ◽  
Jie Yang ◽  
Chen Qiao ◽  
...  

Purpose: To further understand genetic factors that contribute to congenital cataracts, we sought to identify early post-twinning mutational and epigenetic events that may account for the discordant phenotypes of a twin pair. Methods: A patient with a congenital cataract and her twin sister were assessed for genetic factors that might contribute to their discordant phenotypes by mutation screening of 11 candidate genes (CRYGC, CRYGD, CRYAA, CRYAB, CRYBA1, CRYBB1, CRYBB2, MIP, HSF4, GJA3, and GJA8), exome analysis followed by Sanger sequencing of 10 additional candidate genes (PLEKHO2, FRYL, RBP3, P2RX2, GSR, TRAM1, VEGFA, NARS2, CADPS, and TEKT4), and promoter methylation analysis of five representative genes (TRAM1, CRYAA, HSF4, VEGFA, GJA3, DCT) plus one additional candidate gene (FTL). Results: Mutation screening revealed no gene mutation differences between the patient and her twin sister for the 11 candidate genes. Exome sequencing analysis revealed variations between the twins in 442 genes, 10 of which are expressed in the eye. However, these differential variants could not be confirmed by Sanger sequencing. Furthermore, epigenetic discordance was not detected in the twin pair. Conclusions: The genomic DNA mutational and epigenetic events assessed in this study could not explain the discordance in the development of phenotypic differences between the twin pair, suggesting the possible involvement of somatic mutations or environmental factors. Identification of possible causes requires further research.


2003 ◽  
Vol 121B (1) ◽  
pp. 112-118 ◽  
Author(s):  
Susanne Froelich Fabre ◽  
Pia Axelman ◽  
�sa Almkvist ◽  
Hans Basun ◽  
Lars Lannfelt

2004 ◽  
Vol 13 (2) ◽  
pp. 198-207 ◽  
Author(s):  
Elena Bonora ◽  
◽  
Janine A Lamb ◽  
Gabrielle Barnby ◽  
Nuala Sykes ◽  
...  

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