scholarly journals Races of the Celery Pathogen Fusarium oxysporum f. sp. apii Are Polyphyletic

2017 ◽  
Vol 107 (4) ◽  
pp. 463-473 ◽  
Author(s):  
Lynn Epstein ◽  
Sukhwinder Kaur ◽  
Peter L. Chang ◽  
Noelia Carrasquilla-Garcia ◽  
Guiyun Lyu ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Pcr Primers ◽  
Nucleotide Polymorphisms ◽  
In Planta ◽  
Evolutionary Origins ◽  
Illumina Data ◽  
Long Read ◽  
Race 2 ◽  
Race 4 ◽  
Highly Virulent

Fusarium oxysporum species complex (FOSC) isolates were obtained from celery with symptoms of Fusarium yellows between 1993 and 2013 primarily in California. Virulence tests and a two-gene dataset from 174 isolates indicated that virulent isolates collected before 2013 were a highly clonal population of F. oxysporum f. sp. apii race 2. In 2013, new highly virulent clonal isolates, designated race 4, were discovered in production fields in Camarillo, California. Long-read Illumina data were used to analyze 16 isolates: six race 2, one of each from races 1, 3, and 4, and seven genetically diverse FOSC that were isolated from symptomatic celery but are nonpathogenic on this host. Analyses of a 10-gene dataset comprising 38 kb indicated that F. oxysporum f. sp. apii is polyphyletic; race 2 is nested within clade 3, whereas the evolutionary origins of races 1, 3, and 4 are within clade 2. Based on 6,898 single nucleotide polymorphisms from the core FOSC genome, race 3 and the new highly virulent race 4 are highly similar with Nei’s Da = 0.0019, suggesting that F. oxysporum f. sp. apii race 4 evolved from race 3. Next generation sequences were used to develop PCR primers that allow rapid diagnosis of races 2 and 4 in planta.

scholarly journals The Effect of Temperature on Disease Severity and Growth of Fusarium oxysporum f. sp. apii Races 2 and 4 in Celery

2021 ◽  
Author(s):  
Sukhwinder Kaur ◽  
Radwan Barakat ◽  
Jaskirat Kaur ◽  
Lynn Epstein
Keyword(s):  
Fusarium Oxysporum ◽  
Species Complex ◽  
Effect Of Temperature ◽  
In Planta ◽  
Soil Temperatures ◽  
Logistic Regressions ◽  
Race 2 ◽  
Production Areas ◽  
Race 4 ◽  
Linear Regressions

Fusarium oxysporum f. sp. apii (Foa) race 4, which is in F. oxysporum species complex (FOSC) Clade 2, causes a new Fusarium wilt of celery. We compared Foa race 4 with race 2, which causes Fusarium yellows of celery and is in FOSC Clade 3. Optimal temperatures for celery yield are 16 to 18°C. Soil temperatures in California celery production areas can range up to 26°C, and the maximal rate of hyphal extension of Foa races 2 and 4 in culture are 25°C and 28°C, respectively. Here, we compared the effect of temperatures from 16 to 26°C on growth of Foa races 4 and 2 in two celery cultivars: Challenger, which is resistant to Foa race 2 and susceptible to race 4; and Sonora, which is susceptible to both Foa races 2 and 4. Based on linear regressions, as temperature increases, there is an increase in the log of Foa race 4 DNA concentration in celery crowns and in the reduction in plant height. Based on logistic regressions, as temperature increases, the incidence of vascular discoloration increases in celery with either Foa race 2 or 4 infection. In both cultivars, temperatures of 22°C and above resulted in a significantly (α=0.05) greater concentration of Foa race 4 than race 2 in planta. The concentration of Foa race 2 in crowns in Challenger is temperature-independent and comparatively low; consequently, Challenger is, at least partly, resistant rather than tolerant to Foa race 2.

scholarly journals Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii

BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Peter Henry ◽  
Sukhwinder Kaur ◽  
Quyen Anh Tran Pham ◽  
Radwan Barakat ◽  
Samuel Brinker ◽  
...  
Keyword(s):  
Species Complex ◽  
Pcr Primers ◽  
Single Copy ◽  
Preliminary Evidence ◽  
In Planta ◽  
Conserved Genes ◽  
Compatibility Group ◽  
Race 2 ◽  
Race 4

Abstract Background Members of the F. oxysporium species complex (FOSC) in the f. sp. apii (Foa) are pathogenic on celery and those in f. sp. coriandrii (Foci) are pathogenic on coriander (=cilantro). Foci was first reported in California in 2005; a new and highly aggressive race 4 of Foa was observed in 2013 in California. Preliminary evidence indicated that Foa can also cause disease on coriander, albeit are less virulent than Foci. Comparative genomics was used to investigate the evolutionary relationships between Foa race 4, Foa race 3, and the Foci, which are all in FOSC Clade 2, and Foa race 2, which is in FOSC Clade 3. Results A phylogenetic analysis of 2718 single-copy conserved genes and mitochondrial DNA sequence indicated that Foa races 3 and 4 and the Foci are monophyletic within FOSC Clade 2; these strains also are in a single somatic compatibility group. However, in the accessory genomes, the Foci versus Foa races 3 and 4 differ in multiple contigs. Based on significantly increased expression of Foa race 4 genes in planta vs. in vitro, we identified 23 putative effectors and 13 possible pathogenicity factors. PCR primers for diagnosis of either Foa race 2 or 4 and the Foci were identified. Finally, mixtures of conidia that were pre-stained with different fluorochromes indicated that Foa race 4 formed conidial anastomosis tubes (CATs) with Foci. Foa race 4 and Foa race 2, which are in different somatic compatibility groups, did not form CATs with each other. Conclusions There was no evidence that Foa race 2 was involved in the recent evolution of Foa race 4; Foa race 2 and 4 are CAT-incompatible. Although Foa races 3 and 4 and the Foci are closely related, there is no evidence that either Foci contributed to the evolution of Foa race 4, or that Foa race 4 was the recent recipient of a multi-gene chromosomal segment from another strain. However, horizontal chromosome transfer could account for the major difference in the accessory genomes of Foa race 4 and the Foci and for their differences in host range.

Characterisation of Strains of Fusarium oxysporum f.sp. cubense by Production of Volatiles

1991 ◽  
Vol 39 (2) ◽  
pp. 161 ◽  
Author(s):  
NY Moore ◽  
PA Hargreaves ◽  
KG Pegg ◽  
JAG Irwin
Keyword(s):  
Fusarium Oxysporum ◽  
Vegetative Compatibility ◽  
Vegetative Compatibility Group ◽  
Compatibility Group ◽  
Race 1 ◽  
Race 2 ◽  
Race 4

The production of volatiles on steamed rice by Australian isolates of Fusarium oxysporum f. sp. cubense correlated well with race and vegetative compatibility group (VCG). All race 4 isolates (VCGs 0120, 0129) produced distinctive volatile odours which gave characteristic gas chromatograms where the num- ber of peaks equated to VCG. Race 1 (VCGs 0124, 0125) and race 2 (VCG 0128) isolates, as well as non-pathogenic isolates of F. oxysporum from the banana rhizosphere, did not produce detectable volatiles and gave chromatograms without significant peaks.

scholarly journals Race 3, a New and Highly Virulent Race of Fusarium oxysporum f. sp. niveum Causing Fusarium Wilt in Watermelon

Plant Disease ◽  
2010 ◽  
Vol 94 (1) ◽  
pp. 92-98 ◽  
Author(s):  
X. G. Zhou ◽  
K. L. Everts ◽  
B. D. Bruton
Keyword(s):  
Fusarium Oxysporum ◽  
Host Range ◽  
Fusarium Wilt ◽  
Citrullus Lanatus ◽  
Genetic Difference ◽  
Infested Soil ◽  
Reference Isolate ◽  
New Race ◽  
Race 2 ◽  
Highly Virulent

Three races (0, 1, and 2) of Fusarium oxysporum f. sp. niveum have been previously described in watermelon (Citrullus lanatus) based on their ability to cause disease on differential watermelon genotypes. Four isolates of F. oxysporum f. sp. niveum collected from wilted watermelon plants or infested soil in Maryland, along with reference isolates of races 0, 1, and 2, were compared for virulence, host range, and vegetative compatibility. Race identification was made on the watermelon differentials Sugar Baby, Charleston Gray, Dixielee, Calhoun Gray, and PI-296341-FR using a root-dip, tray-dip, or pipette inoculation method. All four Maryland isolates were highly virulent, causing 78 to 100% wilt on all differentials, one of which was PI-296341-FR, considered highly resistant to race 2. The isolates also produced significantly greater colonization in the lower stems of PI-296341-FR than a standard race 2 reference isolate. In field microplots, two of the isolates caused over 90% wilt on PI-296341-FR, whereas no disease was caused by a race 2 isolate. All four isolates were nonpathogenic on muskmelon, cucumber, pumpkin, and squash, confirming their host specific pathogenicity to watermelon. The Maryland isolates were vegetatively compatible to each other but not compatible with the race 2 isolates evaluated, indicating their genetic difference from race 2. This study proposes that the Maryland isolates belong to a new race, race 3, the most virulent race of F. oxysporum f. sp. niveum described to date.

scholarly journals Unique Secreted in Xylem Genes in Banana-Infecting Endophytic Fusarium Oxysporum

Proceedings ◽  
2020 ◽  
Vol 36 (1) ◽  
pp. 180
Author(s):  
Rebecca Lyons ◽  
Elizabeth Czislowski ◽  
Isabel Zeil-Rolfe ◽  
Shubhdeep Kaur ◽  
Zhendong Liu ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Effector Proteins ◽  
In Planta ◽  
Banana Industry ◽  
Fusarium Wilt Of Banana ◽  
Race 4 ◽  
Fusarium Oxysporum Species Complex ◽  
Six Genes

Members of the Fusarium oxysporum species complex include pathogenic and non-pathogenic isolates and infect a broad range of plant species. F. oxysporum f. sp. cubense (Foc) causes the destructive Fusarium wilt of banana, and the recently emerged Foc tropical race 4 strain threatens the global banana industry. Secreted in xylem (SIX) genes encode for F. oxysporum effector proteins that are associated with virulence in pathogenic F. oxysporum, however they have rarely been reported from non-pathogenic F. oxysporum isolates. Our recent survey of asymptomatic banana plants grown in Foc-infested fields in Queensland and northern NSW revealed that diverse Fusarium spp, including F. oxysporum, reside in the plant roots and pseudostem without causing obvious damage to the plant. Intriguingly, we amplified SIX genes from several of the putative endophytic F. oxysporum isolates identified in the survey and found that they differ in their profile to known Foc SIX genes. To study the role of the endophytic F. oxysporum isolates in planta and the biological function of their SIX genes in more detail, we will re-inoculate cultivated and wild diploid banana lines with the endophytic F. oxysporum strains under glasshouse conditions to assess if they are non-pathogenic on banana. Secondly, we will determine whether the endophytic F. oxysporum SIX genes are expressed in planta and/or in vitro and look at the transcriptome changes occurring in the host following infection. Finally, endophytic F. oxysporum strains transformed with GFP will be used to investigate the extent of fungal colonisation in the plant.

scholarly journals A DNA-Based Procedure for In Planta Detection of Fusarium oxysporum f. sp. phaseoli

2002 ◽  
Vol 92 (3) ◽  
pp. 237-244 ◽  
Author(s):  
Fernando M. Alves-Santos ◽  
Brisa Ramos ◽  
M. Asunción García-Sánchez ◽  
Arturo P. Eslava ◽  
José María Díaz-Mínguez
Keyword(s):  
Common Bean ◽  
Fusarium Oxysporum ◽  
Scar Marker ◽  
Rapd Analysis ◽  
Random Amplified Polymorphic Dna ◽  
Rapd Marker ◽  
In Planta ◽  
Sequence Characterized Amplified Region ◽  
Polymerase Chain ◽  
Highly Virulent

We have characterized strains of Fusarium oxysporum from common bean fields in Spain that were nonpathogenic on common bean, as well as F. oxysporum strains (F. oxysporum f. sp. phaseoli) pathogenic to common bean by random amplified polymorphic DNA (RAPD) analysis. We identified a RAPD marker (RAPD 4.12) specific for the highly virulent pathogenic strains of the seven races of F. oxysporum f. sp. phaseoli. Sequence analysis of RAPD 4.12 allowed the design of oligonucleotides that amplify a 609-bp sequence characterized amplified region (SCAR) marker (SCAR-B310A280). Under controlled environmental and greenhouse conditions, detection of the pathogen by polymerase chain reaction was 100% successful in root samples of infected but still symptomless plants and in stem samples of plants with disease severity of ≥4 in the Centro Internacional de Agricultura Tropical (CIAT; Cali, Colombia) scale. The diagnostic procedure can be completed in 5 h and allows the detection of all known races of the pathogen in plant samples at early stages of the disease with no visible symptoms.

scholarly journals New Virulence Groups in Fusarium oxysporum f. sp. phaseoli: The Expression of the Gene Coding for the Transcription Factor ftf1 Correlates with Virulence

2011 ◽  
Vol 101 (4) ◽  
pp. 470-479 ◽  
Author(s):  
José J. de Vega-Bartol ◽  
Raúl Martín-Dominguez ◽  
Brisa Ramos ◽  
María-Asunción García-Sánchez ◽  
José María Díaz-Mínguez
Keyword(s):  
Transcription Factor ◽  
Common Bean ◽  
Fusarium Oxysporum ◽  
Quantitative Polymerase Chain Reaction ◽  
In Planta ◽  
Gene Encoding ◽  
Runner Bean ◽  
Bean Plants ◽  
Highly Virulent ◽  
Common Bean Plants

Fusarium oxysporum f. sp. phaseoli strains isolated from runner bean plants showing Fusarium wilt symptoms were characterized. The analysis of the genetic diversity of these strains and the comparison with strains formerly isolated from diseased common bean plants grown in the same region of Spain indicated a close genetic similarity among them. Pathogenicity assays carried out on runner bean plants showed virulence differences that allowed the classification of these strains into three groups: super virulent, highly virulent, and weakly virulent. However, all the analyzed strains behaved as highly virulent when inoculated on common bean plants, indicating that virulence is specific of the host–pathogen interaction. We also analyzed the number of copies and expression of the gene encoding the transcription factor ftf1, which has been shown to be specific of virulent F. oxysporum strains and highly up-regulated during plant infection. In planta real-time quantitative polymerase chain reaction expression analysis showed that expression of ftf1 was correlated with the degree of virulence. The comparative analysis of the polymorphic copies of ftf1 detected in the strains here characterized and those detected in the genome sequence of F. oxysporum f. sp. lycopersici strain 4287 indicates that some of the copies are likely nonfunctional.

scholarly journals A Cerato-Platanin Family Protein FocCP1 Is Essential for the Penetration and Virulence of Fusarium oxysporum f. sp. cubense Tropical Race 4

2019 ◽  
Vol 20 (15) ◽  
pp. 3785 ◽  
Author(s):  
Siwen Liu ◽  
Bo Wu ◽  
Jing Yang ◽  
Fangcheng Bi ◽  
Tao Dong ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Virulence Factor ◽  
Molecular Mechanisms ◽  
Early Stage ◽  
Transcript Level ◽  
In Planta ◽  
Knock Out ◽  
Penetration Ability ◽  
Fusarium Wilt Of Banana ◽  
Race 4

Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4) is well-known as the causal agent of Fusarium wilt of banana and is one of the most destructive phytopathogens for banana plants. The molecular mechanisms underlying Foc TR4 virulence remain elusive. Here, we demonstrate that a cerato-platanin (CP) protein, FocCP1, functions as a virulence factor that is required by Foc TR4 for penetration and full virulence. The FocCP1 gene was expressed in every condition studied, showing a high transcript level in planta at the early stage of infection. Infiltration of the recombinant FocCP1 protein induced significant cell death and upregulated defence-related gene expression. FocCP1 knock-out strains showed a significant decrease in aerial growth rather than aqueous growth, which is reminiscent of hydrophobins. Furthermore, deletion of FocCP1 significantly reduced virulence and dramatically reduced infective growth in banana roots, likely resulting from a defective penetration ability. Taken together, the results of this study provide novel insight into the function of the recently identified FocCP1 as a virulence factor in Foc TR4.

scholarly journals Effect of in Planta Treatment of ‘Cavendish’ Banana with Herbicides and Fungicides on the Colonisation and Sporulation by Fusarium oxysporum f.sp. cubense Subtropical Race 4

2021 ◽  
Vol 7 (3) ◽  
pp. 184
Author(s):  
Jay Anderson ◽  
Elizabeth Aitken
Keyword(s):  
Fusarium Oxysporum ◽  
Fusarium Wilt ◽  
Effective Control ◽  
In Planta ◽  
Banana Production ◽  
Cavendish Banana ◽  
Green Fluorescent ◽  
Race 4

Fusarium wilt caused by the soil-borne fungus Fusarium oxysporum f.sp. cubense (Foc) is a significant constraint to banana production worldwide, with the recent expansion of banana growing regions impacted by Foc Tropical Race 4 (TR4). The lack of commercially acceptable Cavendish cultivars with Foc resistance means the only current means of effective control is through strict quarantine and inoculum management. One method of control that is currently advocated includes the removal of infected plants which have been killed using herbicide injections. The aim of this work was to examine the effect of herbicide and fungicide treatments on sporulation of the fungus. In glasshouse studies using a green fluorescent transformed Foc Subtropical Race 4 isolate, we found treatments with herbicide hastened colonisation of the banana tissue and the production of micro- and macroconidia. The use of a fungicide did not prevent sporulation of the fungus in such tissue. This study demonstrates that herbicide treated plants are a source of potential inoculum for infection of nearby plants.

scholarly journals Identification and Expression of Secreted In Xylem Pathogenicity Genes in Fusarium oxysporum f. sp. pisi

2021 ◽  
Vol 12 ◽  
Author(s):  
Sascha Jenkins ◽  
Andrew Taylor ◽  
Alison C. Jackson ◽  
Andrew D. Armitage ◽  
Helen J. Bates ◽  
...  
Keyword(s):  
United Kingdom ◽  
Fusarium Oxysporum ◽  
Major Gene ◽  
Housekeeping Gene ◽  
Gene Profiling ◽  
In Planta ◽  
The United Kingdom ◽  
Differential Cultivars ◽  
Race 1 ◽  
Race 2

Fusarium oxysporum is a soilborne fungal plant pathogen responsible for causing disease in many economically important crops with “special forms” (formae speciales) adapted to infect specific plant hosts. F. oxysporum f. sp. pisi (FOP) is the causal agent of Fusarium wilt disease of pea. It has been reported in every country where peas are grown commercially. Disease is generally controlled using resistant cultivars possessing single major gene resistance and therefore there is a constant risk of breakdown. The main aim of this work was to characterise F. oxysporum isolates collected from diseased peas in the United Kingdom as well as FOP isolates obtained from other researchers representing different races through sequencing of a housekeeping gene and the presence of Secreted In Xylem (SIX) genes, which have previously been associated with pathogenicity in other F. oxysporum f. spp. F. oxysporum isolates from diseased United Kingdom pea plants possessed none or just one or two known SIX genes with no consistent pattern of presence/absence, leading to the conclusion that they were foot-rot causing isolates rather than FOP. In contrast, FOP isolates had different complements of SIX genes with all those identified as race 1 containing SIX1, SIX6, SIX7, SIX9, SIX10, SIX11, SIX12, and SIX14. FOP isolates that were identified as belonging to race 2 through testing on differential pea cultivars, contained either SIX1, SIX6, SIX9, SIX13, SIX14 or SIX1, SIX6, SIX13. Significant upregulation of SIX genes was also observed in planta over the early stages of infection by different FOP races in pea roots. Race specific SIX gene profiling may therefore provide potential targets for molecular identification of FOP races but further research is needed to determine whether variation in complement of SIX genes in FOP race 2 isolates results in differences in virulence across a broader set of pea differential cultivars.

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