scholarly journals Whole-Genome Sequence of Toxic Freshwater Cyanobacterium Chrysosporum ovalisporum Strain UAM-MAO

2018 ◽  
Vol 7 (14) ◽  
Author(s):  
Soledad Sanz-Alférez ◽  
Carolina E. Rodríguez-Sanz ◽  
Ángel Barón-Sola ◽  
Francisca F. del Campo
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Freshwater Systems ◽  
Freshwater Cyanobacterium ◽  
Artificial Pond ◽  
Mao A

Here, we report the complete nucleotide sequence of Chrysosporum ovalisporum UAM-MAO, a filamentous, cylindrospermopsin-producing cyanobacterium involved in bloom forming in freshwater systems worldwide. It was isolated from an artificial pond in Madrid, Spain.

scholarly journals Draft Genome Sequence of Bacillus sp. Strain IITD106, Isolated from Oil-Contaminated Soil

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Arif Nissar Zargar ◽  
Saroj Mishra ◽  
Manoj Kumar ◽  
Preeti Srivastava
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Contaminated Soil ◽  
Complete Nucleotide Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Bacillus Sp ◽  
Unique Ability

Here, we report the whole-genome sequence of Bacillus sp. strain IITD106. The bacterium has the unique ability to produce saponins. The complete nucleotide sequence will provide insights into the various genes and regulators involved in the biosynthesis of saponin.

scholarly journals Complete Genome Sequence of a Lineage IV Peste des Petits Ruminants Virus from Turkey, 2018

2020 ◽  
Vol 9 (15) ◽  
Author(s):  
Sabri Hacıoğlu ◽  
Simon King ◽  
Şirin Gülsün Çizmeci ◽  
Öznur Yeşil ◽  
John Flannery ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Nucleotide Sequence Identity ◽  
Clinical Signs ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Peste Des Petits Ruminants ◽  
Sequence Identity ◽  
Lineage Iv

We report the whole-genome sequence of a peste des petits ruminants virus (PPRV) from a lamb exhibiting clinical signs in Turkey in September 2018. The genome of PPRV/Turkey/Central_Anatolia/2018 shows the highest nucleotide sequence identity (97.63%) to PPRV isolated in Turkey in 2000.

Whole-Genome Sequence Characterization of Primary Auxin-Responsive Aux/IAA Gene Family in Sorghum (Sorghum bicolor L.)

2010 ◽  
Vol 36 (4) ◽  
pp. 688-694
Author(s):  
Yi-Jun WANG ◽  
Yan-Ping LÜ ◽  
Qin XIE ◽  
De-Xiang DENG ◽  
Yun-Long BIAN
Keyword(s):  
Sorghum Bicolor ◽  
Gene Family ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Characterization ◽  
I Gene

Whole-Genome Sequence Isolation, Chromosome Location, and Characteriza-tion of Primary Auxin-ResponsiveAux/IAAGene Family inAegilops tauschii

2014 ◽  
Vol 40 (12) ◽  
pp. 2059
Author(s):  
Lin-Yi QIAO ◽  
Xin LI ◽  
Zhi-Jian CHANG ◽  
Xiao-Jun ZHANG ◽  
Hai-Xian ZHAN ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Chromosome Location

scholarly journals Whole genome sequence of Corynebacterium kroppenstedtii isolated from a case of recurrent granulomatous mastitis

IDCases ◽  
2020 ◽  
pp. e01034
Author(s):  
Charlie Tan ◽  
Fang-I Lu ◽  
Patryk Aftanas ◽  
Kara Tsang ◽  
Samira Mubareka ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Granulomatous Mastitis

TIGER: inferring DNA replication timing from whole-genome sequence data

2021 ◽  
Author(s):  
Amnon Koren ◽  
Dashiell J Massey ◽  
Alexa N Bracci
Keyword(s):  
Dna Replication ◽  
Genome Sequence ◽  
Genomic Dna ◽  
Sequence Data ◽  
Replication Timing ◽  
Whole Genome Sequence ◽  
Supplementary Information ◽  
Whole Genome ◽  
Genome Sequence Data ◽  
Dna Replication Timing

Abstract Motivation Genomic DNA replicates according to a reproducible spatiotemporal program, with some loci replicating early in S phase while others replicate late. Despite being a central cellular process, DNA replication timing studies have been limited in scale due to technical challenges. Results We present TIGER (Timing Inferred from Genome Replication), a computational approach for extracting DNA replication timing information from whole genome sequence data obtained from proliferating cell samples. The presence of replicating cells in a biological specimen leads to non-uniform representation of genomic DNA that depends on the timing of replication of different genomic loci. Replication dynamics can hence be observed in genome sequence data by analyzing DNA copy number along chromosomes while accounting for other sources of sequence coverage variation. TIGER is applicable to any species with a contiguous genome assembly and rivals the quality of experimental measurements of DNA replication timing. It provides a straightforward approach for measuring replication timing and can readily be applied at scale. Availability and Implementation TIGER is available at https://github.com/TheKorenLab/TIGER. Supplementary information Supplementary data are available at Bioinformatics online

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