scholarly journals The Future of (Soil) Microbiome Studies: Current Limitations, Integration, and Perspectives

mSystems ◽  
2021 ◽  
Author(s):  
Stefan Geisen

Microbes dominate the planet’s biodiversity in terms of species number and by driving essential Earth system functions such as the carbon cycle. Soils contain most of this microbial biodiversity.

2019 ◽  
Vol 5 (4) ◽  
pp. 275-281 ◽  
Author(s):  
Peter M. Cox

Abstract Purpose of Review Feedbacks between CO2-induced climate change and the carbon cycle are now routinely represented in the Earth System Models (ESMs) that are used to make projections of future climate change. The inconclusion of climate-carbon cycle feedbacks in climate projections is an important advance, but has added a significant new source of uncertainty. This review assesses the potential for emergent constraints to reduce the uncertainties associated with climate-carbon cycle feedbacks. Recent Findings The emergent constraint technique involves using the full ensemble of models to find an across-ensemble relationship between an observable feature of the Earth System (such as a trend, interannual variation or change in seasonality) and an uncertain aspect of the future. Examples focussing on reducing uncertainties in future atmospheric CO2 concentration, carbon loss from tropical land under warming and CO2 fertilization of mid- and high-latitude photosynthesis are exemplars of these different types of emergent constraints. Summary The power of emergent constraints is that they use the enduring range in model projections to reduce uncertainty in the future of the real Earth System, but there are also risks that indiscriminate data-mining, and systematic model errors could yield misleading constraints. A hypothesis-driven theory-led approach can overcome these risks and also reveal the true promise of emergent constraints—not just as ways to reduce uncertainty in future climate change but also to catalyse advances in our understanding of the Earth System.


Climate ◽  
2021 ◽  
Vol 9 (5) ◽  
pp. 72
Author(s):  
Xing Yi ◽  
Birgit Hünicke ◽  
Eduardo Zorita

Arabian Sea upwelling in the past has been generally studied based on the sediment records. We apply two earth system models and analyze the simulated water vertical velocity to investigate coastal upwelling in the western Arabian Sea over the last millennium. In addition, two models with slightly different configurations are also employed to study the upwelling in the 21st century under the strongest and the weakest greenhouse gas emission scenarios. With a negative long-term trend caused by the orbital forcing of the models, the upwelling over the last millennium is found to be closely correlated with the sea surface temperature, the Indian summer Monsoon and the sediment records. The future upwelling under the Representative Concentration Pathway (RCP) 8.5 scenario reveals a negative trend, in contrast with the positive trend displayed by the upwelling favorable along-shore winds. Therefore, it is likely that other factors, like water stratification in the upper ocean layers caused by the stronger surface warming, overrides the effect from the upwelling favorable wind. No significant trend is found for the upwelling under the RCP2.6 scenario, which is likely due to a compensation between the opposing effects of the increase in upwelling favorable winds and the water stratification.


2015 ◽  
Vol 8 (2) ◽  
pp. 1787-1832 ◽  
Author(s):  
J. Heymann ◽  
M. Reuter ◽  
M. Hilker ◽  
M. Buchwitz ◽  
O. Schneising ◽  
...  

Abstract. Consistent and accurate long-term data sets of global atmospheric concentrations of carbon dioxide (CO2) are required for carbon cycle and climate related research. However, global data sets based on satellite observations may suffer from inconsistencies originating from the use of products derived from different satellites as needed to cover a long enough time period. One reason for inconsistencies can be the use of different retrieval algorithms. We address this potential issue by applying the same algorithm, the Bremen Optimal Estimation DOAS (BESD) algorithm, to different satellite instruments, SCIAMACHY onboard ENVISAT (March 2002–April 2012) and TANSO-FTS onboard GOSAT (launched in January 2009), to retrieve XCO2, the column-averaged dry-air mole fraction of CO2. BESD has been initially developed for SCIAMACHY XCO2 retrievals. Here, we present the first detailed assessment of the new GOSAT BESD XCO2 product. GOSAT BESD XCO2 is a product generated and delivered to the MACC project for assimilation into ECMWF's Integrated Forecasting System (IFS). We describe the modifications of the BESD algorithm needed in order to retrieve XCO2 from GOSAT and present detailed comparisons with ground-based observations of XCO2 from the Total Carbon Column Observing Network (TCCON). We discuss detailed comparison results between all three XCO2 data sets (SCIAMACHY, GOSAT and TCCON). The comparison results demonstrate the good consistency between the SCIAMACHY and the GOSAT XCO2. For example, we found a mean difference for daily averages of −0.60 ± 1.56 ppm (mean difference ± standard deviation) for GOSAT-SCIAMACHY (linear correlation coefficient r = 0.82), −0.34 ± 1.37 ppm (r = 0.86) for GOSAT-TCCON and 0.10 ± 1.79 ppm (r = 0.75) for SCIAMACHY-TCCON. The remaining differences between GOSAT and SCIAMACHY are likely due to non-perfect collocation (±2 h, 10° × 10° around TCCON sites), i.e., the observed air masses are not exactly identical, but likely also due to a still non-perfect BESD retrieval algorithm, which will be continuously improved in the future. Our overarching goal is to generate a satellite-derived XCO2 data set appropriate for climate and carbon cycle research covering the longest possible time period. We therefore also plan to extend the existing SCIAMACHY and GOSAT data set discussed here by using also data from other missions (e.g., OCO-2, GOSAT-2, CarbonSat) in the future.


2016 ◽  
Vol 7 (6) ◽  
pp. 910-931 ◽  
Author(s):  
Rebecca M. B. Harris ◽  
Tomas A. Remenyi ◽  
Grant J. Williamson ◽  
Nathaniel L. Bindoff ◽  
David M. J. S. Bowman

2018 ◽  
Vol 9 (2) ◽  
pp. 507-523 ◽  
Author(s):  
Steven J. Lade ◽  
Jonathan F. Donges ◽  
Ingo Fetzer ◽  
John M. Anderies ◽  
Christian Beer ◽  
...  

Abstract. Changes to climate–carbon cycle feedbacks may significantly affect the Earth system's response to greenhouse gas emissions. These feedbacks are usually analysed from numerical output of complex and arguably opaque Earth system models. Here, we construct a stylised global climate–carbon cycle model, test its output against comprehensive Earth system models, and investigate the strengths of its climate–carbon cycle feedbacks analytically. The analytical expressions we obtain aid understanding of carbon cycle feedbacks and the operation of the carbon cycle. Specific results include that different feedback formalisms measure fundamentally the same climate–carbon cycle processes; temperature dependence of the solubility pump, biological pump, and CO2 solubility all contribute approximately equally to the ocean climate–carbon feedback; and concentration–carbon feedbacks may be more sensitive to future climate change than climate–carbon feedbacks. Simple models such as that developed here also provide workbenches for simple but mechanistically based explorations of Earth system processes, such as interactions and feedbacks between the planetary boundaries, that are currently too uncertain to be included in comprehensive Earth system models.


2013 ◽  
Vol 9 (3) ◽  
pp. 1111-1140 ◽  
Author(s):  
M. Eby ◽  
A. J. Weaver ◽  
K. Alexander ◽  
K. Zickfeld ◽  
A. Abe-Ouchi ◽  
...  

Abstract. Both historical and idealized climate model experiments are performed with a variety of Earth system models of intermediate complexity (EMICs) as part of a community contribution to the Intergovernmental Panel on Climate Change Fifth Assessment Report. Historical simulations start at 850 CE and continue through to 2005. The standard simulations include changes in forcing from solar luminosity, Earth's orbital configuration, CO2, additional greenhouse gases, land use, and sulphate and volcanic aerosols. In spite of very different modelled pre-industrial global surface air temperatures, overall 20th century trends in surface air temperature and carbon uptake are reasonably well simulated when compared to observed trends. Land carbon fluxes show much more variation between models than ocean carbon fluxes, and recent land fluxes appear to be slightly underestimated. It is possible that recent modelled climate trends or climate–carbon feedbacks are overestimated resulting in too much land carbon loss or that carbon uptake due to CO2 and/or nitrogen fertilization is underestimated. Several one thousand year long, idealized, 2 × and 4 × CO2 experiments are used to quantify standard model characteristics, including transient and equilibrium climate sensitivities, and climate–carbon feedbacks. The values from EMICs generally fall within the range given by general circulation models. Seven additional historical simulations, each including a single specified forcing, are used to assess the contributions of different climate forcings to the overall climate and carbon cycle response. The response of surface air temperature is the linear sum of the individual forcings, while the carbon cycle response shows a non-linear interaction between land-use change and CO2 forcings for some models. Finally, the preindustrial portions of the last millennium simulations are used to assess historical model carbon-climate feedbacks. Given the specified forcing, there is a tendency for the EMICs to underestimate the drop in surface air temperature and CO2 between the Medieval Climate Anomaly and the Little Ice Age estimated from palaeoclimate reconstructions. This in turn could be a result of unforced variability within the climate system, uncertainty in the reconstructions of temperature and CO2, errors in the reconstructions of forcing used to drive the models, or the incomplete representation of certain processes within the models. Given the forcing datasets used in this study, the models calculate significant land-use emissions over the pre-industrial period. This implies that land-use emissions might need to be taken into account, when making estimates of climate–carbon feedbacks from palaeoclimate reconstructions.


2017 ◽  
Vol 14 (9) ◽  
pp. 2343-2357 ◽  
Author(s):  
Thomas Kaminski ◽  
Pierre-Philippe Mathieu

Abstract. The vehicles that fly the satellite into a model of the Earth system are observation operators. They provide the link between the quantities simulated by the model and the quantities observed from space, either directly (spectral radiance) or indirectly estimated through a retrieval scheme (biogeophysical variables). By doing so, observation operators enable modellers to properly compare, evaluate, and constrain their models with the model analogue of the satellite observations. This paper provides the formalism and a few examples of how observation operators can be used in combination with data assimilation techniques to better ingest satellite products in a manner consistent with the dynamics of the Earth system expressed by models. It describes commonalities and potential synergies between assimilation and classical retrievals. This paper explains how the combination of observation operators and their derivatives (linearizations) form powerful research tools. It introduces a technique called automatic differentiation that greatly simplifies both the development and the maintenance of code for the evaluation of derivatives. Throughout this paper, a special focus lies on applications to the carbon cycle.


2021 ◽  
Author(s):  
Teea Kortetmäki ◽  
Mikael Puurtinen ◽  
Miikka Salo ◽  
Riikka Aro ◽  
Stefan Baumeister ◽  
...  

Tensions between the well-being of present humans, future humans, and nonhuman nature manifest in social protests and political and academic debates over the future of Earth. The increasing consumption of natural resources no longer increases, let alone equalises, human well-being, but has led to the current ecological crisis. While the crisis has been acknowledged, it is often approached in human-centred terms, with framings that limit the moral worth of nonhuman nature to its contribution to human well-being. We derive and propose the concept of planetary well-being to recognise the moral considerability of both human and nonhuman well-being, and to promote transdisciplinary, cross-cultural discourse for addressing ecological and social crises and for promoting societal and cultural transformation. Conceptually, we shift focus in well-being from individuals to Earth system and ecosystem processes that underlie all well-being. Planetary well-being is a state where the integrity of Earth system and ecosystem processes remains unimpaired to a degree that species and populations can persist to the future and organisms have the opportunity to achieve well-being. After grounding and introducing planetary well-being, we shortly discuss how it can be measured and reflect upon its potential as a bridging concept between different worldviews.


2012 ◽  
Vol 9 (10) ◽  
pp. 13439-13496 ◽  
Author(s):  
M. J. Smith ◽  
M. C. Vanderwel ◽  
V. Lyutsarev ◽  
S. Emmott ◽  
D. W. Purves

Abstract. The feedback between climate and the terrestrial carbon cycle will be a key determinant of the dynamics of the Earth System over the coming decades and centuries. However Earth System Model projections of the terrestrial carbon-balance vary widely over these timescales. This is largely due to differences in their carbon cycle models. A major goal in biogeosciences is therefore to improve understanding of the terrestrial carbon cycle to enable better constrained projections. Essential to achieving this goal will be assessing the empirical support for alternative models of component processes, identifying key uncertainties and inconsistencies, and ultimately identifying the models that are most consistent with empirical evidence. To begin meeting these requirements we data-constrained all parameters of all component processes within a global terrestrial carbon model. Our goals were to assess the climate dependencies obtained for different component processes when all parameters have been inferred from empirical data, assess whether these were consistent with current knowledge and understanding, assess the importance of different data sets and the model structure for inferring those dependencies, assess the predictive accuracy of the model, and to identify a methodology by which alternative component models could be compared within the same framework in future. Although formulated as differential equations describing carbon fluxes through plant and soil pools, the model was fitted assuming the carbon pools were in states of dynamic equilibrium (input rates equal output rates). Thus, the parameterised model is of the equilibrium terrestrial carbon cycle. All but 2 of the 12 component processes to the model were inferred to have strong climate dependencies although it was not possible to data-constrain all parameters indicating some potentially redundant details. Similar climate dependencies were obtained for most processes whether inferred individually from their corresponding data sets or using the full terrestrial carbon model and all available data sets, indicating a strong overall consistency in the information provided by different data sets under the assumed model formulation. A notable exception was plant mortality, in which qualitatively different climate dependencies were inferred depending on the model formulation and data sets used, highlighting this component as the major structural uncertainty in the model. All but two component processes predicted empirical data better than a null model in which no climate dependency was assumed. Equilibrium plant carbon was predicted especially well (explaining around 70% of the variation in the withheld evaluation data). We discuss the advantages of our approach in relation to advancing our understanding of the carbon cycle and enabling Earth System Models make better constrained projections.


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