scholarly journals Transcriptomic and proteomic profiling revealed reprogramming of carbon metabolism in acetate-grown human pathogen Candida glabrata

2021 ◽  
Vol 28 (1) ◽  
Author(s):  
Shu Yih Chew ◽  
Alistair J. P. Brown ◽  
Benjamin Yii Chung Lau ◽  
Yoke Kqueen Cheah ◽  
Kok Lian Ho ◽  
...  
Keyword(s):  
Carbon Source ◽  
Carbon Metabolism ◽  
Candida Glabrata ◽  
Glyoxylate Cycle ◽  
Glucose Deprivation ◽  
Malate Synthase ◽  
Metabolic Responses ◽  
Metabolic Adaptation ◽  
High Morbidity ◽  
The Glyoxylate Cycle

Abstract Background Emergence of Candida glabrata, which causes potential life-threatening invasive candidiasis, has been widely associated with high morbidity and mortality. In order to cause disease in vivo, a robust and highly efficient metabolic adaptation is crucial for the survival of this fungal pathogen in human host. In fact, reprogramming of the carbon metabolism is believed to be indispensable for phagocytosed C. glabrata within glucose deprivation condition during infection. Methods In this study, the metabolic responses of C. glabrata under acetate growth condition was explored using high-throughput transcriptomic and proteomic approaches. Results Collectively, a total of 1482 transcripts (26.96%) and 242 proteins (24.69%) were significantly up- or down-regulated. Both transcriptome and proteome data revealed that the regulation of alternative carbon metabolism in C. glabrata resembled other fungal pathogens such as Candida albicans and Cryptococcus neoformans, with up-regulation of many proteins and transcripts from the glyoxylate cycle and gluconeogenesis, namely isocitrate lyase (ICL1), malate synthase (MLS1), phosphoenolpyruvate carboxykinase (PCK1) and fructose 1,6-biphosphatase (FBP1). In the absence of glucose, C. glabrata shifted its metabolism from glucose catabolism to anabolism of glucose intermediates from the available carbon source. This observation essentially suggests that the glyoxylate cycle and gluconeogenesis are potentially critical for the survival of phagocytosed C. glabrata within the glucose-deficient macrophages. Conclusion Here, we presented the first global metabolic responses of C. glabrata to alternative carbon source using transcriptomic and proteomic approaches. These findings implicated that reprogramming of the alternative carbon metabolism during glucose deprivation could enhance the survival and persistence of C. glabrata within the host.

Co-ordinate regulation of genes involved in storage lipid mobilization in Arabidopsis thaliana

2001 ◽  
Vol 29 (2) ◽  
pp. 283-286 ◽  
Author(s):  
E. L. Rylott ◽  
M. A. Hooks ◽  
I. A. Graham
Keyword(s):  
Arabidopsis Thaliana ◽  
Enzyme Activities ◽  
Phosphoenolpyruvate Carboxykinase ◽  
Isocitrate Lyase ◽  
Glyoxylate Cycle ◽  
Molecular Genetic ◽  
Regulation Of Gene Expression ◽  
Growth Period ◽  
Malate Synthase ◽  
The Glyoxylate Cycle

Molecular genetic approaches in the model plant Arabidopsis thaliana (ColO) are shedding new light on the role and control of the pathways associated with the mobilization of lipid reserves during oilseed germination and post-germinative growth. Numerous independent studies have reported on the expression of individual genes encoding enzymes from the three major pathways: β-oxidation, the glyoxylate cycle and gluconeogenesis. However, a single comprehensive study of representative genes and enzymes from the different pathways in a single plant species has not been done. Here we present results from Arabidopsis that demonstrate the co-ordinate regulation of gene expression and enzyme activities for the acyl-CoA oxidase- and 3-ketoacyl-CoA thiolasemediated steps of β-oxidation, the isocitrate lyase and malate synthase steps of the glyoxylate cycle and the phosphoenolpyruvate carboxykinase step of gluconeogenesis. The mRNA abundance and enzyme activities increase to a peak at stage 2, 48 h after the onset of seed germination, and decline thereafter either to undetectable levels (for malate synthase and isocitrate lyase) or low basal levels (for the genes of β-oxidation and gluconeogenesis). The co-ordinate induction of all these genes at the onset of germination raises the possibility that a global regulatory mechanism operates to induce the expression of genes associated with the mobilization of storage reserves during the heterotrophic growth period.

scholarly journals The Apparent Malate Synthase Activity of Rhodobacter sphaeroides Is Due to Two Paralogous Enzymes, (3S)-Malyl-Coenzyme A (CoA)/β-Methylmalyl-CoA Lyase and (3S)- Malyl-CoA Thioesterase

2010 ◽  
Vol 192 (5) ◽  
pp. 1249-1258 ◽  
Author(s):  
Tobias J. Erb ◽  
Lena Frerichs-Revermann ◽  
Georg Fuchs ◽  
Birgit E. Alber
Keyword(s):  
Rhodobacter Sphaeroides ◽  
Coenzyme A ◽  
Glyoxylate Cycle ◽  
Condensation Reaction ◽  
Malate Synthase ◽  
Acetyl Coa ◽  
Acetyl Coenzyme A ◽  
Claisen Condensation ◽  
Enzyme Functions ◽  
The Glyoxylate Cycle

ABSTRACT Assimilation of acetyl coenzyme A (acetyl-CoA) is an essential process in many bacteria that proceeds via the glyoxylate cycle or the ethylmalonyl-CoA pathway. In both assimilation strategies, one of the final products is malate that is formed by the condensation of acetyl-CoA with glyoxylate. In the glyoxylate cycle this reaction is catalyzed by malate synthase, whereas in the ethylmalonyl-CoA pathway the reaction is separated into two proteins: malyl-CoA lyase, a well-known enzyme catalyzing the Claisen condensation of acetyl-CoA with glyoxylate and yielding malyl-CoA, and an unidentified malyl-CoA thioesterase that hydrolyzes malyl-CoA into malate and CoA. In this study the roles of Mcl1 and Mcl2, two malyl-CoA lyase homologs in Rhodobacter sphaeroides, were investigated by gene inactivation and biochemical studies. Mcl1 is a true (3S)-malyl-CoA lyase operating in the ethylmalonyl-CoA pathway. Notably, Mcl1 is a promiscuous enzyme and catalyzes not only the condensation of acetyl-CoA and glyoxylate but also the cleavage of β-methylmalyl-CoA into glyoxylate and propionyl-CoA during acetyl-CoA assimilation. In contrast, Mcl2 was shown to be the sought (3S)-malyl-CoA thioesterase in the ethylmalonyl-CoA pathway, which specifically hydrolyzes (3S)-malyl-CoA but does not use β-methylmalyl-CoA or catalyze a lyase or condensation reaction. The identification of Mcl2 as thioesterase extends the enzyme functions of malyl-CoA lyase homologs that have been known only as “Claisen condensation” enzymes so far. Mcl1 and Mcl2 are both related to malate synthase, an enzyme which catalyzes both a Claisen condensation and thioester hydrolysis reaction.

The fine structure and selected histochemistry of ungerminated basidiospores of Agrocybe acericola

1996 ◽  
Vol 74 (5) ◽  
pp. 780-787 ◽  
Author(s):  
Donald G. Ruch ◽  
Kiki Nurtjahja
Keyword(s):  
Fine Structure ◽  
Acid Phosphatase ◽  
Glyoxylate Cycle ◽  
Outer Wall ◽  
Spore Wall ◽  
Malate Synthase ◽  
Marker Enzyme ◽  
Wall Ultrastructure ◽  
Membrane Bound ◽  
The Glyoxylate Cycle

The basidiospore wall of Agrocybe acericola is composed of two distinct layers that are continuous around the spores. At the germ pore, the outer wall is very thin and the inner wall becomes thicker. The plasma membrane is appressed to the inner wall and lacks distinct invaginations. The protoplasm is densely packed with ribosomes. Spores contain very little lipid distributed at each end. Mitochondria are well defined and distributed throughout the cytoplasm. Spores are binucleate, with the two nuclei lying on a line nearly perpendicular to the long axis of the cell. Various sizes of single membrane-bound vacuoles are widely distributed in the cytoplasm. These vacuoles were shown to contain acid phosphatase, indicating lysosomal activity. Microbody-like organelles are observed, which are probably glyoxysomes, since assays of malate synthase, a marker enzyme of the glyoxylate cycle, are positive. Keywords: Agrocybe, spore wall ultrastructure, basidiospore ultrastructure, glyoxylate cycle, malate synthase, acid phosphatase.

The malate synthase of Paracoccidioides brasiliensis Pb01 is required in the glyoxylate cycle and in the allantoin degradation pathway

2009 ◽  
pp. 1-12
Author(s):  
Patricia Fernanda Zambuzzi-Carvalho ◽  
Aline Helena Da Silva Cruz ◽  
Ludier Kesser Santos-Silva ◽  
Alfredo Miranda Goes ◽  
Celia Maria De Almeida Soares ◽  
...  
Keyword(s):  
Paracoccidioides Brasiliensis ◽  
Glyoxylate Cycle ◽  
Degradation Pathway ◽  
Malate Synthase ◽  
The Glyoxylate Cycle

STUDIES ON RUMEN COLIFORM ORGANISMS: II. UTILIZATION OF ACETATE BY ESCHERICHIA COLI 64 ISOLATED FROM THE RUMEN FLUID OF A COW FED ALFALFA HAY

1967 ◽  
Vol 47 (3) ◽  
pp. 199-209 ◽  
Author(s):  
C. R. Krishnamurti ◽  
L. W. McElroy
Keyword(s):  
Sodium Acetate ◽  
Isocitrate Lyase ◽  
Protein Hydrolysate ◽  
Rumen Fluid ◽  
Glyoxylate Cycle ◽  
Malate Synthase ◽  
E Coli ◽  
Spectrophotometric Methods ◽  
Acetate Medium ◽  
The Glyoxylate Cycle

When cells of E. coli 64 were harvested in their exponential phase of growth in an acetate medium and incubated aerobically with sodium acetate-2-C14, about 33% of the label appeared in CO2 after 1 hr. Of the radioactivity in the cells, 72% was recovered in the protein hydrolysate, 8% in the nucleic acid, 6% in the lipid and 14% in the ethanol-soluble fractions. The radioactivity in the protein hydrolysate of cells incubated with sodium acetate-2-C14 was approximately 20 times that in the hydrolysate of cells incubated with C14O2 as the carbon source. By spectrophotometric methods, it was demonstrated that cell-free extracts of cells grown on acetate contained acetate kinase and phosphate acetyltransferase, plus, as demonstrated by spectrophotometric and isotopic methods, isocitrate lyase and malate synthase which are characteristic of the glyoxylate cycle. The enzymes of the glyoxylate cycle could not be demonstrated in cell-free extracts of E. coli 64 grown on glucose under either aerobic or anaerobic conditions. Possible functions that E. coli 64 may have in the maintenance of anaerobiosis in the rumen and utilization of acetate through the glyoxylate pathway are discussed.

Modelling the peroxisomal carbon leak during lipid mobilization in Arabidopsis

2010 ◽  
Vol 38 (5) ◽  
pp. 1230-1233 ◽  
Author(s):  
Mark A. Hooks ◽  
Elizabeth Allen ◽  
Jonathan A.D. Wattis
Keyword(s):  
Carbon Metabolism ◽  
Glyoxylate Cycle ◽  
Seedling Development ◽  
Wild Type ◽  
Acetyl Coa ◽  
Primary Metabolite ◽  
Lipid Mobilization ◽  
Acetate Assimilation ◽  
Development Levels ◽  
The Glyoxylate Cycle

Mutation of the ACN1 (acetate non-utilizing 1) locus of Arabidopsis results in altered acetate assimilation into gluconeogenic sugars and anapleurotic amino acids and leads to an overall depression in primary metabolite levels by approx. 50% during seedling development. Levels of acetyl-CoA were higher in acn1 compared with wild-type, which is counterintuitive to the activity of ACN1 as a peroxisomal acetyl-CoA synthetase. We hypothesize that ACN1 recycles free acetate to acetyl-CoA within peroxisomes in order that carbon remains fed into the glyoxylate cycle. When ACN1 is not present, carbon in the form of acetate can leak out of peroxisomes and is reactivated to acetyl-CoA within the cytosol. Kinetic models incorporating estimates of carbon input and pathway dynamics from a variety of literature sources have proven useful in explaining how ACN1 may prevent the carbon leak and even contribute to the control of peroxisomal carbon metabolism.

scholarly journals The malate synthase ofParacoccidioides brasiliensis Pb01 is required in the glyoxylate cycle and in the allantoin degradation pathway

2009 ◽  
Vol 47 (7) ◽  
pp. 734-744 ◽  
Author(s):  
Patrícia Fernanda Zambuzzi-Carvalho ◽  
Aline Helena Da Silva Cruz ◽  
Ludier Kesser Santos-Silva ◽  
Alfredo Miranda Goes ◽  
Célia Maria De Almeida Soares ◽  
...  
Keyword(s):  
Glyoxylate Cycle ◽  
Degradation Pathway ◽  
Malate Synthase ◽  
The Glyoxylate Cycle

Changes in metabolic reserves and enzyme activities during zoospore motility and cyst germination in Phytophthora palmivora

1975 ◽  
Vol 53 (14) ◽  
pp. 1411-1416 ◽  
Author(s):  
Christina E. Bimpong
Keyword(s):  
Specific Activity ◽  
Isocitrate Lyase ◽  
Glyoxylate Cycle ◽  
Krebs Cycle ◽  
Malate Synthase ◽  
Phytophthora Palmivora ◽  
Germination Period ◽  
Major Energy Source ◽  
The Glyoxylate Cycle ◽  
Cyst Germination

Lipids measured as acyl glycerides and free fatty acids provided the major energy source during a 6-h motile and a 2-h germination period in zoospores and cysts, respectively, of Phytophthora palmivora. Carbohydrates and proteins decreased slightly during the 6-h motile period but increased significantly during germination. Specific activity of isocitrate lyase decreased both during zoospore motility and cyst germination. Only trace amounts of malate synthase activity were detected in zoospores and cysts. The activities of both NAD-isocitrate and malate dehydrogenases increased slightly, while those of NADP-isocitrate and succinate dehydrogenases decreased during the 6-h motile period. During the 2-h germination period the specific activities of NAD- and NADP-isocitrate, malate, and succinate dehydrogenases increased. It appears that during the motile stage the glyoxylate cycle provided more metabolites for the Krebs cycle than it did during germination.

Effect of Leaf Senescence on Glyoxylate Cycle Enzyme Activities

1992 ◽  
Vol 19 (6) ◽  
pp. 723 ◽  
Author(s):  
L Pistelli ◽  
P Perata ◽  
A Alpi
Keyword(s):  
Malate Dehydrogenase ◽  
Enzyme Activities ◽  
Citrate Synthase ◽  
Isocitrate Lyase ◽  
Glyoxylate Cycle ◽  
Malate Synthase ◽  
Cycle Enzyme ◽  
Hydroxypyruvate Reductase ◽  
Foliar Senescence ◽  
The Glyoxylate Cycle

In order to elucidate the metabolism of the peroxisomes during foliar senescence of leaf beet (Beta vulgaris L., var. cicla), peroxisomal activities have been determined at various stages of senescence. Catalase and hydroxypyruvate reductase activities decreased whereas those of the β-oxidation pathway and glyoxylate cycle enzymes increased at the same time. The increased activities of malate synthase, isocitrate lyase, malate dehydrogenase and citrate synthase indicate that the glyoxylate cycle might be activated during the foliar senescence of leaf beet.

Sign in / Sign up

Export Citation Format

Share Document