scholarly journals Natural Genetic Variation and Candidate Genes for Morphological Traits in Drosophila melanogaster

PLoS ONE ◽  
2016 ◽  
Vol 11 (7) ◽  
pp. e0160069 ◽  
Author(s):  
Valeria Paula Carreira ◽  
Julián Mensch ◽  
Esteban Hasson ◽  
Juan José Fanara
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Variation ◽  
Candidate Genes ◽  
Morphological Traits ◽  
Natural Genetic Variation

scholarly journals Genetic architecture of natural variation in visual senescence in Drosophila

2016 ◽  
Vol 113 (43) ◽  
pp. E6620-E6629 ◽  
Author(s):  
Mary Anna Carbone ◽  
Akihiko Yamamoto ◽  
Wen Huang ◽  
Rachel A. Lyman ◽  
Tess Brune Meadors ◽  
...  
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Variation ◽  
Life Span ◽  
Candidate Genes ◽  
Natural Variation ◽  
Genetic Basis ◽  
Nervous System Development ◽  
Interindividual Variation ◽  
Human Populations ◽  
Age Dependent

Senescence, i.e., functional decline with age, is a major determinant of health span in a rapidly aging population, but the genetic basis of interindividual variation in senescence remains largely unknown. Visual decline and age-related eye disorders are common manifestations of senescence, but disentangling age-dependent visual decline in human populations is challenging due to inability to control genetic background and variation in histories of environmental exposures. We assessed the genetic basis of natural variation in visual senescence by measuring age-dependent decline in phototaxis using Drosophila melanogaster as a genetic model system. We quantified phototaxis at 1, 2, and 4 wk of age in the sequenced, inbred lines of the Drosophila melanogaster Genetic Reference Panel (DGRP) and found an average decline in phototaxis with age. We observed significant genetic variation for phototaxis at each age and significant genetic variation in senescence of phototaxis that is only partly correlated with phototaxis. Genome-wide association analyses in the DGRP and a DGRP-derived outbred, advanced intercross population identified candidate genes and genetic networks associated with eye and nervous system development and function, including seven genes with human orthologs previously associated with eye diseases. Ninety percent of candidate genes were functionally validated with targeted RNAi-mediated suppression of gene expression. Absence of candidate genes previously implicated with longevity indicates physiological systems may undergo senescence independent of organismal life span. Furthermore, we show that genes that shape early developmental processes also contribute to senescence, demonstrating that senescence is part of a genetic continuum that acts throughout the life span.

scholarly journals Natural genetic variation in transcriptome reflects network structure inferred with major effect mutations: insulin/TOR and associated phenotypes in Drosophila melanogaster

BMC Genomics ◽  
2009 ◽  
Vol 10 (1) ◽  
pp. 124 ◽  
Author(s):  
Sergey V Nuzhdin ◽  
Jennifer A Brisson ◽  
Andrew Pickering ◽  
Marta L Wayne ◽  
Lawrence G Harshman ◽  
...  
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Variation ◽  
Network Structure ◽  
Major Effect ◽  
Natural Genetic Variation

scholarly journals Characterizing Male-Female Interactions Using Natural Genetic Variation in Drosophila melanogaster

2014 ◽  
Vol 106 (1) ◽  
pp. 67-79 ◽  
Author(s):  
M. Reinhart ◽  
T. Carney ◽  
A. G. Clark ◽  
A. C. Fiumera
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Variation ◽  
Natural Genetic Variation

scholarly journals THE ORGANIZATION OF GENETIC VARIATION FOR RECOMBINATION IN DROSOPHILA MELANOGASTER

Genetics ◽  
1986 ◽  
Vol 114 (2) ◽  
pp. 525-547
Author(s):  
Lisa D Brooks ◽  
R William Marks
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Variation ◽  
Natural Population ◽  
Small Region ◽  
Crossing Over ◽  
Fine Scale ◽  
Response To Selection ◽  
Natural Genetic Variation ◽  
The Third ◽  
Scale Response

ABSTRACT The amount and form of natural genetic variation for recombination were studied in six lines for which second chromosomes were extracted from a natural population of Drosophila melanogaster. Multiply marked second, Χ and third chromosomes were used to score recombination. Recombination in the second chromosomes varied in both amount and distribution. These second chromosomes caused variation in the amount and distribution of crossing over in the Χ chromosome and also caused variation in the amount, but not the distribution, of crossing over in the third chromosome. The total amount of crossing over on a chromosome varied by 12-14%. One small region varied twofold; other regions varied by 16-38%. Lines with less crossing over on one chromosome generally had less crossing over on other chromosomes, the opposite of the standard interchromosomal effect. These results show that modifiers of recombination can affect more than one chromosome, and that the variation exists for fine-scale response to selection on recombination.

scholarly journals Natural genetic variation underlying tiller development in barley (Hordeum vulgareL)

2019 ◽  
Author(s):  
Allison M. Haaning ◽  
Kevin P. Smith ◽  
Gina L. Brown-Guedira ◽  
Shiaoman Chao ◽  
Priyanka Tyagi ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Genetic Control ◽  
Morphological Traits ◽  
Agronomic Traits ◽  
Developmental Rate ◽  
Tiller Number ◽  
Natural Genetic Variation ◽  
Trade Offs ◽  
Days To Heading ◽  
Lateral Branches

ABSTRACTIn barley (Hordeum vulgareL.), lateral branches called tillers contribute to grain yield and define shoot architecture, but genetic control of tiller number and developmental rate are not well characterized. The primary objectives of this work were to examine relationships between tiller number and other agronomic and morphological traits and identify natural genetic variation associated with tiller number and rate, and related traits. We grew 768 lines from the USDA National Small Grain Core Collection in the field and collected data over two years for tiller number and rate, and agronomic and morphological traits. Our results confirmed that spike row-type and days to heading are correlated with tiller number, and as much as 28% of tiller number variance is attributed to these traits. In addition, negative correlations between tiller number and leaf width and stem diameter were observed, indicating trade-offs between tiller development and other vegetative growth. Thirty-three quantitative trait loci (QTL) were associated with tiller number or rate. Of these, 40% overlapped QTL associated with days to heading and 22% overlapped QTL associated with spike row-type, further supporting that tiller development is influenced by these traits. Despite this, some QTL associated with tiller number or rate, including the major QTL on chromosome 3H, were not associated with any other traits, suggesting that tiller number can be modified independently of other important agronomic traits. These results enhance our knowledge of the genetic control of tiller development in barley, which is important for optimizing tiller number and rate for yield improvement.

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