Three-year investigation of the presence and distribution of tobacco viruses
in Serbia revealed that Alfalfa mosaic virus (AMV) appeared every year with
different frequency in tobacco crops. During 2008, the presence of AMV was
detected in most of the tested samples (58.82%) and it was the second most
common compared to all other viruses which presence was confirmed in Serbia.
In 2006 and 2007, AMV was detected in a significantly lower percentage (2.80%
and 13.64%, respectively). This study showed that Alfalfa mosaic virus was
more commonly found in multiple infections with two, three or even four
detected viruses. Single infections were detected only in 2006, in one
tobacco field in the locality of Futog. During this investigation, a rapid
and simple protocol was optimized and developed for molecular detection of
AMV in tobacco leaves, using primers CPAMV1/CPAMV2 and commercially available
kits for total RNA extraction as well as for RT-PCR (reverse transcription -
polymerase chain reaction). Using RT-PCR and these primers that flank the AMV
coat protein gene, a DNA fragment of 751 bp was amplified, sequenced, and
compared with the sequences available in GenBank database. The sequence of
isolate 196-08 (GenBank Acc. No. FJ527749) proved to be identical at the
nucleotide level of 99 to 93% with those from other parts of the world.
Phylogenetic analysis of 27 isolates based on 528 bp sequences of the coat
protein gene did not show correlation of the isolates with their geographic
origin or plant host and showed that these isolates fall into four molecular
groups of strains. Serbian AMV isolate from tobacco belongs to group IV, the
group that includes most of the isolates selected for phylogenetic analysis.