1P003 Molecular dynamics simulations of the ligand-binding core of the inositol 1,4,5-trisphosphate receptor in the ligand-free slate(Proteins-structure and structure-function relationship,Oral Presentations)

1P-058 Molecular dynamics simulations of the ligand-binding core of inositol 1, 4, 5-trisphosphate receptor and its mutant in the ligand-free state(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s30_1 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S30

Author(s):

Yoichi Ida ◽

Sotaro Fuchigamai ◽

Mitsunori Ikeguchi ◽

Akainori Kidera

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Annual Meeting ◽

Inositol 1 ◽

Ligand Free ◽

Biophysical Society ◽

Binding Core ◽

Dynamics Simulations ◽

Trisphosphate Receptor

2P040 Molecular dynamics simurations of the ligand-binding core of the inositol 1,4,5-trisphosphate receptor in the ligand-free state(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s89_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S89

Author(s):

Yoichi Ida ◽

Sotaro Fuchigami ◽

mitsunori ikeguchi ◽

akinori kidera

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Annual Meeting ◽

Free State ◽

Ligand Free ◽

Inositol 1,4,5 Trisphosphate ◽

Biophysical Society ◽

Binding Core ◽

Trisphosphate Receptor

Molecular dynamics simulations of the conformational changes of the glutamate receptor ligand-binding core in the presence of glutamate and kainate

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.1111 ◽

2001 ◽

Vol 44 (4) ◽

pp. 460-469 ◽

Cited By ~ 28

Author(s):

Jesús Mendieta ◽

Galo Ramírez ◽

Federico Gago

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Glutamate Receptor ◽

Conformational Changes ◽

Receptor Ligand ◽

Binding Core ◽

Dynamics Simulations

Less explored plant lipases: Modeling and molecular dynamics simulations of plant lipases in different solvents and temperatures to understand structure-function relationship

International Journal of Biological Macromolecules ◽

10.1016/j.ijbiomac.2020.08.227 ◽

2020 ◽

Vol 164 ◽

pp. 3546-3558

Author(s):

Sreejanani Sankar ◽

Karthe Ponnuraj

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Function Relationship ◽

Dynamics Simulations

The conserved Arg241-Glu439 salt bridge determines flexibility of the inositol 1,4,5-trisphosphate receptor binding core in the ligand-free state

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24304 ◽

2013 ◽

Vol 81 (10) ◽

pp. 1699-1708 ◽

Cited By ~ 4

Author(s):

Yoichi Ida ◽

Akinori Kidera

Keyword(s):

Receptor Binding ◽

Salt Bridge ◽

Free State ◽

Ligand Free ◽

Inositol 1,4,5 Trisphosphate ◽

Binding Core ◽

Trisphosphate Receptor

1P010 Molecular Dynamics Simulation of Actin G-F Transformation(Proteins-structure and structure-function relationship,Oral Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s26_1 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S26

Author(s):

Emiko Nakamura ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Structure Function ◽

Dynamics Simulation ◽

Function Relationship ◽

Oral Presentations

Insights on the structure–function relationship of human multidrug resistance protein 7 (MRP7/ABCC10) from molecular dynamics simulations and docking studies

MedComm ◽

10.1002/mco2.65 ◽

2021 ◽

Author(s):

Jing‐Quan Wang ◽

Qingbin Cui ◽

Zi‐Ning Lei ◽

Qiu‐Xu Teng ◽

Ning Ji ◽

...

Keyword(s):

Molecular Dynamics ◽

Multidrug Resistance ◽

Structure Function ◽

Docking Studies ◽

Multidrug Resistance Protein ◽

Resistance Protein ◽

Function Relationship ◽

Dynamics Simulations ◽

Relationship Of

1P590 Investigation of The Structure-Function Relationship of Importin-β by Molecular Dynamics Simulations(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s294_2 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S294

Author(s):

Yoshinori Hirano ◽

Noriaki Okimoto ◽

Atsushi Suenaga ◽

Makoto Taiji ◽

Naoko Imamoto ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Structure Function ◽

Poster Session ◽

Dynamics Simulation ◽

Meeting Program ◽

Function Relationship ◽

Dynamics Simulations ◽

Relationship Of

2P009 Analysis of Opening Process of E-coli Mechanosensitive Channel MscL by Molecular Dynamics Simulations on Wild Type and Mutant Models(Proteins-structure and structure-function relationship,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s115_2 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S115

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Mechanosensitive Channel ◽

Wild Type ◽

E Coli ◽

Function Relationship ◽

Dynamics Simulations ◽

Poster Presentations

2P061 Investigation of Domain Motions in Proteins by Molecular Dynamics Simulations(Proteins-structure and structure-function relationship,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s128_2 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S128

Author(s):

Hiroko Kondo ◽

Atsushi Suenaga ◽

Noriyuki Futatsugi ◽

Ryoko Yanai ◽

Gentaro Morimoto ◽

...

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Function Relationship ◽

Dynamics Simulations ◽

Domain Motions ◽

Poster Presentations