1P-058 Molecular dynamics simulations of the ligand-binding core of inositol 1, 4, 5-trisphosphate receptor and its mutant in the ligand-free state(The 46th Annual Meeting of the Biophysical Society of Japan)

Annual Meeting ◽

Inositol 1 ◽

Ligand Free ◽

Biophysical Society ◽

Binding Core ◽

Dynamics Simulations ◽

Trisphosphate Receptor

2P040 Molecular dynamics simurations of the ligand-binding core of the inositol 1,4,5-trisphosphate receptor in the ligand-free state(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s89_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S89

Author(s):

Yoichi Ida ◽

Sotaro Fuchigami ◽

mitsunori ikeguchi ◽

akinori kidera

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Annual Meeting ◽

Free State ◽

Ligand Free ◽

Inositol 1,4,5 Trisphosphate ◽

Biophysical Society ◽

Binding Core ◽

Trisphosphate Receptor

1P003 Molecular dynamics simulations of the ligand-binding core of the inositol 1,4,5-trisphosphate receptor in the ligand-free slate(Proteins-structure and structure-function relationship,Oral Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s24_2 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S24

Author(s):

Yoichi Ida ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Structure Function ◽

Ligand Free ◽

Inositol 1,4,5 Trisphosphate ◽

Binding Core ◽

Function Relationship ◽

Dynamics Simulations ◽

Trisphosphate Receptor ◽

Oral Presentations

2SCP-05 Protein-ligand binding processes studied by coarse-grained molecular dynamics simulations(Prediction and analysis of protein functions from structural bioinformatics,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s133_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S133

Author(s):

Tohru Terada ◽

Tatsuki Negami ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Annual Meeting ◽

Structural Bioinformatics ◽

Coarse Grained ◽

Biophysical Society ◽

Protein Functions ◽

Dynamics Simulations ◽

Coarse Grained Molecular Dynamics

3C1024 Molecular dynamics simulations for glutamate-binding and cleft-closing processes of the ligand-binding domain of GluR2(3C Protein: Funcrion 2,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s113_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S113

Author(s):

Okimasa Okada ◽

Kei Odai ◽

Tohru Sugimoto ◽

Etsuro Ito

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Annual Meeting ◽

Binding Domain ◽

Ligand Binding Domain ◽

Glutamate Binding ◽

Biophysical Society ◽

1P058 Molecular dynamics simulations for structure changes of PRSet7 by ligand binding(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s150_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S150

Author(s):

Takako Sakano ◽

Hideaki Fujitani

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Annual Meeting ◽

Structure Changes ◽

Protein Property ◽

Biophysical Society ◽

1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations

Molecular dynamics simulations of the conformational changes of the glutamate receptor ligand-binding core in the presence of glutamate and kainate

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.1111 ◽

2001 ◽

Vol 44 (4) ◽

pp. 460-469 ◽

Cited By ~ 28

Author(s):

Jesús Mendieta ◽

Galo Ramírez ◽

Federico Gago

Keyword(s):

Molecular Dynamics ◽

Ligand Binding ◽

Glutamate Receptor ◽

Conformational Changes ◽

Receptor Ligand ◽

Binding Core ◽

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Mechanosensitive Channel ◽

E Coli ◽

Biophysical Society ◽

3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water