scholarly journals HD-ZIP Gene Family: Potential Roles in Improving Plant Growth and Regulating Stress-Responsive Mechanisms in Plants

Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1256
Author(s):  
Rahat Sharif ◽  
Ali Raza ◽  
Peng Chen ◽  
Yuhong Li ◽  
Enas M. El-Ballat ◽  
...  
Keyword(s):  
Plant Growth ◽  
Gene Family ◽  
Leucine Zipper ◽  
Crop Improvement ◽  
Environmental Stresses ◽  
Plant Responses ◽  
Negative Effects ◽  
Biotic Stresses ◽  
Adverse Environmental Conditions ◽  
Zip Genes

Exploring the molecular foundation of the gene-regulatory systems underlying agronomic parameters or/and plant responses to both abiotic and biotic stresses is crucial for crop improvement. Thus, transcription factors, which alone or in combination directly regulated the targeted gene expression levels, are appropriate players for enlightening agronomic parameters through genetic engineering. In this regard, homeodomain leucine zipper (HD-ZIP) genes family concerned with enlightening plant growth and tolerance to environmental stresses are considered key players for crop improvement. This gene family containing HD and LZ domain belongs to the homeobox superfamily. It is further classified into four subfamilies, namely HD-ZIP I, HD-ZIP II, HD-ZIP III, and HD-ZIP IV. The first HD domain-containing gene was discovered in maize cells almost three decades ago. Since then, with advanced technologies, these genes were functionally characterized for their distinct roles in overall plant growth and development under adverse environmental conditions. This review summarized the different functions of HD-ZIP genes in plant growth and physiological-related activities from germination to fruit development. Additionally, the HD-ZIP genes also respond to various abiotic and biotic environmental stimuli by regulating defense response of plants. This review, therefore, highlighted the various significant aspects of this important gene family based on the recent findings. The practical application of HD-ZIP biomolecules in developing bioengineered plants will not only mitigate the negative effects of environmental stresses but also increase the overall production of crop plants.

scholarly journals Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function

2020 ◽  
Vol 22 (1) ◽  
pp. 253
Author(s):  
Venura Herath ◽  
Jeanmarie Verchot
Keyword(s):  
Gene Expression ◽  
Gene Family ◽  
Functional Groups ◽  
Leucine Zipper ◽  
Expression Profiles ◽  
Crop Improvement ◽  
Potato Virus X ◽  
Tissue Growth ◽  
Abiotic Stress Response ◽  
Sequence Alignments

The basic region-leucine zipper (bZIP) transcription factors (TFs) form homodimers and heterodimers via the coil–coil region. The bZIP dimerization network influences gene expression across plant development and in response to a range of environmental stresses. The recent release of the most comprehensive potato reference genome was used to identify 80 StbZIP genes and to characterize their gene structure, phylogenetic relationships, and gene expression profiles. The StbZIP genes have undergone 22 segmental and one tandem duplication events. Ka/Ks analysis suggested that most duplications experienced purifying selection. Amino acid sequence alignments and phylogenetic comparisons made with the Arabidopsis bZIP family were used to assign the StbZIP genes to functional groups based on the Arabidopsis orthologs. The patterns of introns and exons were conserved within the assigned functional groups which are supportive of the phylogeny and evidence of a common progenitor. Inspection of the leucine repeat heptads within the bZIP domains identified a pattern of attractive pairs favoring homodimerization, and repulsive pairs favoring heterodimerization. These patterns of attractive and repulsive heptads were similar within each functional group for Arabidopsis and S. tuberosum orthologs. High-throughput RNA-seq data indicated the most highly expressed and repressed genes that might play significant roles in tissue growth and development, abiotic stress response, and response to pathogens including Potato virus X. These data provide useful information for further functional analysis of the StbZIP gene family and their potential applications in crop improvement.

scholarly journals Maize Responses Challenged by Drought, Elevated Daytime Temperature and Arthropod Herbivory Stresses: A Physiological, Biochemical and Molecular View

2021 ◽  
Vol 12 ◽  
Author(s):  
Cristhian Camilo Chávez-Arias ◽  
Gustavo Adolfo Ligarreto-Moreno ◽  
Augusto Ramírez-Godoy ◽  
Hermann Restrepo-Díaz
Keyword(s):  
Climate Change ◽  
Global Climate ◽  
Direct Consequence ◽  
Environmental Stresses ◽  
Dynamic Responses ◽  
Plant Responses ◽  
Negative Effects ◽  
Maize Crop ◽  
The World ◽  
Insect Interactions

Maize (Zea mays L.) is one of the main cereals grown around the world. It is used for human and animal nutrition and also as biofuel. However, as a direct consequence of global climate change, increased abiotic and biotic stress events have been reported in different regions of the world, which have become a threat to world maize yields. Drought and heat are environmental stresses that influence the growth, development, and yield processes of maize crops. Plants have developed dynamic responses at the physiological, biochemical, and molecular levels that allow them to escape, avoid and/or tolerate unfavorable environmental conditions. Arthropod herbivory can generate resistance or tolerance responses in plants that are associated with inducible and constitutive defenses. Increases in the frequency and severity of abiotic stress events (drought and heat), as a consequence of climate change, can generate critical variations in plant-insect interactions. However, the behavior of herbivorous arthropods under drought scenarios is not well understood, and this kind of stress may have some positive and negative effects on arthropod populations. The simultaneous appearance of different environmental stresses and biotic factors results in very complex plant responses. In this review, recent information is provided on the physiological, biochemical, and molecular responses of plants to the combination of drought, heat stress, and the effect on some arthropod pests of interest in the maize crop.

scholarly journals Metal bioaccumulation alleviates the negative effects of herbivory on plant growth

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Grazieli F. Dueli ◽  
Og DeSouza ◽  
Servio P. Ribeiro
Keyword(s):  
Plant Growth ◽  
Metal Concentration ◽  
Plant Species ◽  
Metal Ion ◽  
Natural Habitat ◽  
Plant Responses ◽  
Metal Bioaccumulation ◽  
Negative Effects ◽  
Quantitative Evidence ◽  
Soil Metal

AbstractMetalliferous soils can selectively shape plant species’ physiology towards tolerance of high metal concentrations that are usually toxic to organisms. Some adapted plant species tolerate and accumulate metal in their tissues. These metals can serve as an elemental defence but can also decrease growth. Our investigation explored the capacity of natural metal accumulation in a tropical tree species, Eremanthus erythropappus (Asteraceae) and the effects of such bioaccumulation on plant responses to herbivory. Seedlings of E. erythropappus were grown in a glasshouse on soils that represented a metal concentration gradient (Al, Cu, Fe, Mn and Zn), and then the exposed plants were fed to the herbivores in a natural habitat. The effect of herbivory on plant growth was significantly mediated by foliar metal ion concentrations. The results suggest that herbivory effects on these plants change from negative to positive depending on soil metal concentration. Hence, these results provide quantitative evidence for a previously unsuspected interaction between herbivory and metal bioaccumulation on plant growth.

scholarly journals Function of Chloroplasts in Plant Stress Responses

2021 ◽  
Vol 22 (24) ◽  
pp. 13464
Author(s):  
Yun Song ◽  
Li Feng ◽  
Mohammed Abdul Muhsen Alyafei ◽  
Abdul Jaleel ◽  
Maozhi Ren
Keyword(s):  
Stress Responses ◽  
Plant Stress ◽  
Environmental Stresses ◽  
Stress Conditions ◽  
Oxygenic Photosynthesis ◽  
Central Position ◽  
Plant Responses ◽  
Primary Metabolism ◽  
Diverse Range ◽  
Biotic Stresses

The chloroplast has a central position in oxygenic photosynthesis and primary metabolism. In addition to these functions, the chloroplast has recently emerged as a pivotal regulator of plant responses to abiotic and biotic stress conditions. Chloroplasts have their own independent genomes and gene-expression machinery and synthesize phytohormones and a diverse range of secondary metabolites, a significant portion of which contribute the plant response to adverse conditions. Furthermore, chloroplasts communicate with the nucleus through retrograde signaling, for instance, reactive oxygen signaling. All of the above facilitate the chloroplast’s exquisite flexibility in responding to environmental stresses. In this review, we summarize recent findings on the involvement of chloroplasts in plant regulatory responses to various abiotic and biotic stresses including heat, chilling, salinity, drought, high light environmental stress conditions, and pathogen invasions. This review will enrich the better understanding of interactions between chloroplast and environmental stresses, and will lay the foundation for genetically enhancing plant-stress acclimatization.

scholarly journals Genome-wide characterization and expression analysis of the HD-Zip gene family in response to drought and salinity stresses in sesame

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Mengyuan Wei ◽  
Aili Liu ◽  
Yujuan Zhang ◽  
Yong Zhou ◽  
Donghua Li ◽  
...  
Keyword(s):  
Gene Family ◽  
Stress Responses ◽  
Leucine Zipper ◽  
Expression Patterns ◽  
Functional Characterization ◽  
Genome Wide ◽  
Gene Structures ◽  
Relationship Of ◽  
Zip Genes

Abstract Background The homeodomain-leucine zipper (HD-Zip) gene family is one of the plant-specific transcription factor families, involved in plant development, growth, and in the response to diverse stresses. However, comprehensive analysis of the HD-Zip genes, especially those involved in response to drought and salinity stresses is lacking in sesame (Sesamum indicum L.), an important oil crop in tropical and subtropical areas. Results In this study, 45 HD-Zip genes were identified in sesame, and denominated as SiHDZ01-SiHDZ45. Members of SiHDZ family were classified into four groups (HD-Zip I-IV) based on the phylogenetic relationship of Arabidopsis HD-Zip proteins, which was further supported by the analysis of their conserved motifs and gene structures. Expression analyses of SiHDZ genes based on transcriptome data showed that the expression patterns of these genes were varied in different tissues. Additionally, we showed that at least 75% of the SiHDZ genes were differentially expressed in responses to drought and salinity treatments, and highlighted the important role of HD-Zip I and II genes in stress responses in sesame. Conclusions This study provides important information for functional characterization of stress-responsive HD-Zip genes and may contribute to the better understanding of the molecular basis of stress tolerance in sesame.

scholarly journals Effect of drought and heat stresses on plant growth and yield: a review

2013 ◽  
Vol 27 (4) ◽  
pp. 463-477 ◽  
Author(s):  
J. Lipiec ◽  
C. Doussan ◽  
A. Nosalewicz ◽  
K. Kondracka
Keyword(s):  
Adverse Effects ◽  
Plant Growth ◽  
Management Practices ◽  
Foliar Application ◽  
Growth And Yield ◽  
Plant Responses ◽  
Phenotypic Flexibility ◽  
Negative Effects ◽  
Effects Of Drought ◽  
Management Approaches

Abstract Drought and heat stresses are important threat limitations to plant growth and sustainable agriculture worldwide. Our objective is to provide a review of plant responses and adaptations to drought and elevated temperature including roots, shoots, and final yield and management approaches for alleviating adverse effects of the stresses based mostly on recent literature. The sections of the paper deal with plant responses including root growth, transpiration, photosynthesis, water use efficiency, phenotypic flexibility, accumulation of compounds of low molecular mass (eg proline and gibberellins), and expression of some genes and proteins for increasing the tolerance to the abiotic stresses. Soil and crop management practices to alleviate negative effects of drought and heat stresses are also discussed. Investigations involving determination of plant assimilate partitioning, phenotypic plasticity, and identification of most stress-tolerant plant genotypes are essential for understanding the complexity of the responses and for future plant breeding. The adverse effects of drought and heat stress can be mitigated by soil management practices, crop establishment, and foliar application of growth regulators by maintaining an appropriate level of water in the leaves due to osmotic adjustment and stomatal performance.

scholarly journals To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses

Plants ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 33
Author(s):  
Hao Chen ◽  
David A. Bullock ◽  
Jose M. Alonso ◽  
Anna N. Stepanova
Keyword(s):  
Abiotic Stress ◽  
Plant Growth ◽  
Stress Responses ◽  
Molecular Mechanisms ◽  
Nutrient Deficiency ◽  
Negative Effects ◽  
Adverse Conditions ◽  
Adverse Environmental Conditions ◽  
Plant Abiotic Stress

Plants often live in adverse environmental conditions and are exposed to various stresses, such as heat, cold, heavy metals, salt, radiation, poor lighting, nutrient deficiency, drought, or flooding. To adapt to unfavorable environments, plants have evolved specialized molecular mechanisms that serve to balance the trade-off between abiotic stress responses and growth. These mechanisms enable plants to continue to develop and reproduce even under adverse conditions. Ethylene, as a key growth regulator, is leveraged by plants to mitigate the negative effects of some of these stresses on plant development and growth. By cooperating with other hormones, such as jasmonic acid (JA), abscisic acid (ABA), brassinosteroids (BR), auxin, gibberellic acid (GA), salicylic acid (SA), and cytokinin (CK), ethylene triggers defense and survival mechanisms thereby coordinating plant growth and development in response to abiotic stresses. This review describes the crosstalk between ethylene and other plant hormones in tipping the balance between plant growth and abiotic stress responses.

scholarly journals The Evolution and Functional Roles of miR408 and Its Targets in Plants

2022 ◽  
Vol 23 (1) ◽  
pp. 530
Author(s):  
Yu Gao ◽  
Baohua Feng ◽  
Caixia Gao ◽  
Huiquan Zhang ◽  
Fengting Wen ◽  
...  
Keyword(s):  
Plant Growth ◽  
Growth And Development ◽  
Target Genes ◽  
Plant Responses ◽  
Evolutionary Analysis ◽  
Abiotic And Biotic Stresses ◽  
Evolutionary Pathway ◽  
Functional Roles ◽  
Biotic Stresses ◽  
Cellular Antioxidants

MicroRNA408 (miR408) is an ancient and highly conserved miRNA, which is involved in the regulation of plant growth, development and stress response. However, previous research results on the evolution and functional roles of miR408 and its targets are relatively scattered, and there is a lack of a systematic comparison and comprehensive summary of the detailed evolutionary pathways and regulatory mechanisms of miR408 and its targets in plants. Here, we analyzed the evolutionary pathway of miR408 in plants, and summarized the functions of miR408 and its targets in regulating plant growth and development and plant responses to various abiotic and biotic stresses. The evolutionary analysis shows that miR408 is an ancient and highly conserved microRNA, which is widely distributed in different plants. miR408 regulates the growth and development of different plants by down-regulating its targets, encoding blue copper (Cu) proteins, and by transporting Cu to plastocyanin (PC), which affects photosynthesis and ultimately promotes grain yield. In addition, miR408 improves tolerance to stress by down-regulating target genes and enhancing cellular antioxidants, thereby increasing the antioxidant capacity of plants. This review expands and promotes an in-depth understanding of the evolutionary and regulatory roles of miR408 and its targets in plants.

scholarly journals Insight into the Role of Epigenetic Processes in Abiotic and Biotic Stress Response in Wheat and Barley

2020 ◽  
Vol 21 (4) ◽  
pp. 1480 ◽  
Author(s):  
Lingyao Kong ◽  
Yanna Liu ◽  
Xiaoyu Wang ◽  
Cheng Chang
Keyword(s):  
Environmental Stresses ◽  
Growth And Yield ◽  
Plant Responses ◽  
Abiotic And Biotic Stresses ◽  
Biotic Stresses ◽  
Recent Developments ◽  
Fine Tune ◽  
Insight Into ◽  
Epigenetic Processes

Environmental stresses such as salinity, drought, heat, freezing, heavy metal and even pathogen infections seriously threaten the growth and yield of important cereal crops including wheat and barley. There is growing evidence indicating that plants employ sophisticated epigenetic mechanisms to fine-tune their responses to environmental stresses. Here, we provide an overview of recent developments in understanding the epigenetic processes and elements—such as DNA methylation, histone modification, chromatin remodeling, and non-coding RNAs—involved in plant responses to abiotic and biotic stresses in wheat and barley. Potentials of exploiting epigenetic variation for the improvement of wheat and barley are discussed.

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