scholarly journals Development and Evaluation of a Chinook Salmon Smolt Swimming Behavior Model

Water ◽  
2021 ◽  
Vol 13 (20) ◽  
pp. 2904
Author(s):  
Edward S. Gross ◽  
Rusty C. Holleman ◽  
Michael J. Thomas ◽  
Nann A. Fangue ◽  
Andrew L. Rypel
Keyword(s):  
Chinook Salmon ◽  
Acoustic Telemetry ◽  
Three Dimensional ◽  
Swimming Behavior ◽  
Route Selection ◽  
Telemetry Data ◽  
Management Scenarios ◽  
Passive Behavior ◽  
Flow Manipulation ◽  
Active Swimming

Hydrologic currents and swimming behavior influence routing and survival of emigrating Chinook salmon in branched migratory corridors. Behavioral particle-tracking models (PTM) of Chinook salmon can estimate migration paths of salmon using the combination of hydrodynamic velocity and swimming behavior. To test our hypotheses of the importance of management, models can simulate historical conditions and alternative management scenarios such as flow manipulation and modification of channel geometry. Swimming behaviors in these models are often specified to match aggregated observed properties such as transit time estimated from acoustic telemetry data. In our study, we estimate swimming behaviors at 5 s intervals directly from acoustic telemetry data and concurrent high-resolution three-dimensional hydrodynamic model results at the junction of the San Joaquin River and Old River in the Sacramento-San Joaquin Delta, California. We use the swimming speed dataset to specify a stochastic swimming behavior consistent with observations of instantaneous swimming. We then evaluate the effect of individual components of the swimming formulation on predicted route selection and the consistency with observed route selection. The PTM predicted route selection fractions are similar among passive and active swimming behaviors for most tags, but the observed route selection for some tags would be unlikely under passive behavior leading to the conclusion that active swimming behavior influenced the route selection of several tagged smolts.

Route selection in a large river during the homing migration of Chinook salmon (Oncorhynchus tshawytscha)

2006 ◽  
Vol 63 (8) ◽  
pp. 1752-1762 ◽  
Author(s):  
Matthew L Keefer ◽  
Christopher C Caudill ◽  
Christopher A Peery ◽  
Theodore C Bjornn
Keyword(s):  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha ◽  
Columbia River ◽  
Large River ◽  
Migration Route ◽  
Route Selection ◽  
Behavioral Differences ◽  
Long Distance ◽  
Selection Decisions ◽  
Efficient Route

Upstream-migrating adult salmon must make a series of correct navigation and route-selection decisions to successfully locate natal streams. In this field study, we examined factors influencing migration route selections early in the migration of 4361 radio-tagged adult Chinook salmon (Oncorhynchus tshawytscha) as they moved upstream past dams in the large (~1 km wide) Columbia River. Substantial behavioral differences were observed among 11 conspecific populations, despite largely concurrent migrations. At dams, Chinook salmon generally preferred ladder passage routes adjacent to the shoreline where their natal tributaries entered, and the degree of preference increased as salmon proximity to natal tributaries increased. Columbia River discharge also influenced route choices, explaining some route selection variability. We suggest that salmon detect lateral gradients in orientation cues across the Columbia River channel that are entrained within tributary plumes and that these gradients in cues can persist downstream for tens to hundreds of kilometres. Detection of tributary plumes in large river systems, using olfactory or other navigation cues, may facilitate efficient route selection and optimize energy conservation by long-distance migrants.

scholarly journals 3D-printed Planktonic Observational Setup and Analysis Pipeline TrackmateTaxis

2020 ◽  
Author(s):  
Clemens C. Döring ◽  
Harald Hausen
Keyword(s):  
Pulse Width ◽  
Pulse Width Modulation ◽  
Photon Emission ◽  
Three Dimensional ◽  
Behavioral Observation ◽  
Swimming Behavior ◽  
Robust Tracking ◽  
Light Path ◽  
Analysis Pipeline ◽  
3D Printed

AbstractPlanktonic organisms are a cornerstone of marine ecosystems. They vary significantly in size and have a repertoire of behaviors to aid them to survive and navigate their three-dimensional environment. One of the most important cues is light. A variety of setups were used to study the swimming behavior of specific organisms, but broader and comparative investigations need more versatile solutions. With the help of 3D printing, we designed and constructed a modular and flexible behavioral observation setup that enables recordings of animals down to 50μm or up to a few centimeters. A video analysis pipeline using ImageJ and python allows a quick, automated, and robust tracking solution, capable of processing many videos automatically. A modular light path allows the addition of filters or use of pulse width modulation to equalize photon emission of LEDs or additional LEDs to mix different wavelengths. Optionally, a spectrometer can be installed to enable live monitoring of a stimulus. We tested the setup with two phototactic marine planktonic larvae. First, we investigated the spectral sensitivity of the 7-day old larvae of the polychaete Malacoceros fuliginosus and second, the behavior of the 200μm spherical bryozoan coronated larvae of Tricellaria inopinata to ultraviolet light coming from the bottom of the vessel. The setup and pipeline were able to record and analyze hundreds of animals simultaneously. We present an inexpensive, modular, and flexible setup to study planktonic behavior of a variety of sizes.

scholarly journals Hydrology of Drained Peatland Forest: Numerical Experiment on the Role of Tree Stand Heterogeneity and Management

Forests ◽  
2018 ◽  
Vol 9 (10) ◽  
pp. 645 ◽  
Author(s):  
Leena Stenberg ◽  
Kersti Haahti ◽  
Hannu Hökkä ◽  
Samuli Launiainen ◽  
Mika Nieminen ◽  
...  
Keyword(s):  
Water Balance ◽  
Numerical Experiment ◽  
Stand Structure ◽  
Three Dimensional ◽  
Stem Volume ◽  
Tree Stand ◽  
Management Scenarios ◽  
Site Water ◽  
Stand Thinning

A prerequisite for sustainable peatland forestry is sufficiently low water table (WT) level for profitable tree production. This requires better understanding on controls and feedbacks between tree stand and its evapotranspiration, drainage network condition, climate, and WT levels. This study explores the role of spatial tree stand distribution in the spatiotemporal distribution of WT levels and site water balance. A numerical experiment was conducted by a three-dimensional (3-D) hydrological model (FLUSH) applied to a 0.5 ha peatland forest assuming (1) spatially uniform interception and transpiration, (2) interception and transpiration scaled with spatial distributions of tree crown and root biomass, and (3) the combination of spatially scaled interception and uniform transpiration. Site water balance and WT levels were simulated for two meteorologically contrasting years. Spatial variations in transpiration were found to control WT levels even in a forest with relatively low stand stem volume (<100 m3/ha). Forest management scenarios demonstrated how stand thinning and reduced drainage efficiency raised WT levels and increased the area and duration of excessively wet conditions having potentially negative economic (reduced tree growth) and environmental (e.g., methane emissions, phosphorus mobilization) consequences. In practice, silvicultural treatment manipulating spatial stand structure should be optimized to avoid emergence of wet spots.

Muscle and Tendon Tissues: Constitutive Modeling and Computational Issues

2011 ◽  
Vol 78 (4) ◽  
Author(s):  
L. A. Spyrou ◽  
N. Aravas
Keyword(s):  
Constitutive Model ◽  
Three Dimensional ◽  
General Purpose ◽  
Connective Tissues ◽  
Semitendinosus Muscle ◽  
Finite Element Program ◽  
Passive Behavior ◽  
Rate Dependent ◽  
Activation Level ◽  
Element Program

A three-dimensional constitutive model for muscle and tendon tissues is developed. Muscle and tendon are considered as composite materials that consist of fibers and the connective tissues and biofluids surrounding the fibers. The model is nonlinear, rate dependent, and anisotropic due to the presence of the fibers. Both the active and passive behaviors of the muscle are considered. The muscle fiber stress depends on the strain (length), strain-rate (velocity), and the activation level of the muscle, whereas the tendon fiber exhibits only passive behavior and the stress depends only on the strain. Multiple fiber directions are modeled via superposition. A methodology for the numerical implementation of the constitutive model in a general-purpose finite element program is developed. The current scheme is used for either static or dynamic analyses. The model is validated by studying the extension of a squid tentacle during a strike to catch prey. The behavior of parallel-fibered and pennate muscles, as well as the human semitendinosus muscle, is studied.

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