scholarly journals Peer Review #2 of "Present and future ecological niche modeling of garter snake species from the Trans-Mexican Volcanic Belt (v0.1)"

Botany ◽  
2018 ◽  
Vol 96 (2) ◽  
pp. 121-133 ◽  
Author(s):  
Flor Rodríguez-Gómez ◽  
Ken Oyama ◽  
Magaly Ochoa-Orozco ◽  
Luis Mendoza-Cuenca ◽  
Ricardo Gaytán-Legaria ◽  
...  

Mexico is a center of diversification for the genus Quercus, with an important number of taxa occurring along the Trans-Mexican Volcanic Belt (TMVB). However, the impact of the interaction between historical and current climatic variation and geological heterogeneity in the TMVB on the genetic and phenotypic diversification within oak species has been scarcely investigated. We used chloroplast DNA microsatellites and a geometric morphometrics analysis of leaf shape to understand differentiation between populations of Quercus deserticola Trel., which inhabits dry highlands along the TMVB. Ecological niche modeling for present-day conditions and projections into past scenarios were performed to evaluate the influence of environmental variables on the evolutionary history of the species. Results showed high genetic diversity (hS= 0.774) and high genetic structure (RST= 0.75) and the morphological subdivision of populations into two clusters, corresponding to the west/south and east/north sectors of the Q. deserticola geographic distribution. Ecological niche modeling indicated that the potential distribution of the species has remained similar from the late Pleistocene to the present. Seemingly, the phylogeographic structure of the species has been shaped by low seed-mediated gene flow and mostly local migration patterns. In turn, leaf shape is responding to climate differences either through phenotypic plasticity or local adaptation.


PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3932 ◽  
Author(s):  
Victoria Sosa ◽  
Israel Loera

Background A number of biotic and abiotic factors have been proposed as drivers of geographic variation in species richness. As biotic elements, inter-specific interactions are the most widely recognized. Among abiotic factors, in particular for plants, climate and topographic variables as well as their historical variation have been correlated with species richness and endemism. In this study, we determine the extent to which the species richness and endemism of monocot geophyte species in Mesoamerica is predicted by current climate, historical climate stability and topography. Methods Using approximately 2,650 occurrence points representing 507 geophyte taxa, species richness (SR) and weighted endemism (WE) were estimated at a geographic scale using grids of 0.5 × 0.5 decimal degrees resolution using Mexico as the geographic extent. SR and WE were also estimated using species distributions inferred from ecological niche modeling for species with at least five spatially unique occurrence points. Current climate, current to Last Glacial Maximum temperature, precipitation stability and topographic features were used as predictor variables on multiple spatial regression analyses (i.e., spatial autoregressive models, SAR) using the estimates of SR and WE as response variables. The standardized coefficients of the predictor variables that were significant in the regression models were utilized to understand the observed patterns of species richness and endemism. Results Our estimates of SR and WE based on direct occurrence data and distribution modeling generally yielded similar results, though estimates based on ecological niche modeling indicated broader distribution areas for SR and WE than when species richness was directly estimated using georeferenced coordinates. The SR and WE of monocot geophytes were highest along the Trans-Mexican Volcanic Belt, in both cases with higher levels in the central area of this mountain chain. Richness and endemism were also elevated in the southern regions of the Sierra Madre Oriental and Occidental mountain ranges, and in the Tehuacán Valley. Some areas of the Sierra Madre del Sur and Sierra Madre Oriental had high levels of WE, though they are not the areas with the highest SR. The spatial regressions suggest that SR is mostly influenced by current climate, whereas endemism is mainly affected by topography and precipitation stability. Conclusions Both methods (direct occurrence data and ecological niche modeling) used to estimate SR and WE in this study yielded similar results and detected a key area that should be considered in plant conservation strategies: the central region of the Trans-Mexican Volcanic Belt. Our results also corroborated that species richness is more closely correlated with current climate factors while endemism is related to differences in topography and to changes in precipitation levels compared to the LGM climatic conditions.


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