Patterns of Temporal and Spatial Variability of Sponge Assemblages

<p>The primary goals of this thesis were to understand the spatial and temporal pattern of sponge assemblage variation over a variety of scales and investigate suitable monitoring methods for sponge assemblages. Sponges are an ecologically significant group in benthic marine communities, which are often ignored in current monitoring schemes. In chapter two the sponge biodiversity of New Zealand waters to 200m was examined using Taxonomic Distinctness measures initially to test if genera data could be used as a proxy for species level data in New Zealand waters. It was found that over 50% of the variation in genera biodiversity could be explained by location and depth around New Zealand. The study helped pinpoint where there were gaps in the New Zealand dataset, in particular for the West Coast of the South Island and also areas such as the Wellington South Coast, which had higher than expected values for Average and Variation Taxonomic distinctness measures, which as important areas where sponges should be monitored to make sure the high levels of biodiversity are protected. Taxonomic distinctness measures are useful for initially assessing how the biodiversity is distributed, especially when using a data set with uneven sampling effort, as it is robust to spatial and temporal bias in the majority of cases. However, there was an outlier to the genera data correlating well with the variation in species data in the case of a site dominated by Haliclona sp (Lyttelton Harbour). In chapters three and four the spatial and temporal variability of sponge assemblages of the Wellington South Coast were explored creating both a species list for the area and an understanding of how the sponge assemblage varies over time and space. There were significant differences in the sponges assemblages in similar habitat types over a scale of a few hundred metres. In addition, although all the sponge assemblages changed seasonally, the changes at each sampling site responded in a slightly different way most likely due to spatiotemporal variation in environmental conditions. A similar seasonal pattern was also observed in chapter five for sponge assemblages at Skomer Marine Reserve and this pattern was also clear when using morphological monitoring methods. This means that once a site has been mapped for biodiversity it is possible for some habitats to use morphological monitoring to identify if the sponge assemblage is changing significantly saving time and money. The results from Indonesia (chapter six) showed that although the sponge assemblages were changing significantly in the actual species present and their abundances, the proportion of diversity within each spatial level (quadrat, site and region) remained consistent when sampled at the same time each year throughout the five year study. In species rich assemblages there are a variety of life strategies that can respond differently to shifts in environmental conditions and contribute to ecological functioning in various ways. Various monitoring methods have been tested using sponge assemblages over various spatial and temporal scales in this thesis. Spatial, temporal and the interaction of spatial and temporal factors were all important for identifying significant assemblage differences at all of the sites. Further studies integrating the interaction of spatial and temporal factors into understanding monitoring data sets are vital to understand the patterns of assemblage variability and therefore incorporate into habitat management plans.</p>

Patterns of Temporal and Spatial Variability of Sponge Assemblages

<p>The primary goals of this thesis were to understand the spatial and temporal pattern of sponge assemblage variation over a variety of scales and investigate suitable monitoring methods for sponge assemblages. Sponges are an ecologically significant group in benthic marine communities, which are often ignored in current monitoring schemes. In chapter two the sponge biodiversity of New Zealand waters to 200m was examined using Taxonomic Distinctness measures initially to test if genera data could be used as a proxy for species level data in New Zealand waters. It was found that over 50% of the variation in genera biodiversity could be explained by location and depth around New Zealand. The study helped pinpoint where there were gaps in the New Zealand dataset, in particular for the West Coast of the South Island and also areas such as the Wellington South Coast, which had higher than expected values for Average and Variation Taxonomic distinctness measures, which as important areas where sponges should be monitored to make sure the high levels of biodiversity are protected. Taxonomic distinctness measures are useful for initially assessing how the biodiversity is distributed, especially when using a data set with uneven sampling effort, as it is robust to spatial and temporal bias in the majority of cases. However, there was an outlier to the genera data correlating well with the variation in species data in the case of a site dominated by Haliclona sp (Lyttelton Harbour). In chapters three and four the spatial and temporal variability of sponge assemblages of the Wellington South Coast were explored creating both a species list for the area and an understanding of how the sponge assemblage varies over time and space. There were significant differences in the sponges assemblages in similar habitat types over a scale of a few hundred metres. In addition, although all the sponge assemblages changed seasonally, the changes at each sampling site responded in a slightly different way most likely due to spatiotemporal variation in environmental conditions. A similar seasonal pattern was also observed in chapter five for sponge assemblages at Skomer Marine Reserve and this pattern was also clear when using morphological monitoring methods. This means that once a site has been mapped for biodiversity it is possible for some habitats to use morphological monitoring to identify if the sponge assemblage is changing significantly saving time and money. The results from Indonesia (chapter six) showed that although the sponge assemblages were changing significantly in the actual species present and their abundances, the proportion of diversity within each spatial level (quadrat, site and region) remained consistent when sampled at the same time each year throughout the five year study. In species rich assemblages there are a variety of life strategies that can respond differently to shifts in environmental conditions and contribute to ecological functioning in various ways. Various monitoring methods have been tested using sponge assemblages over various spatial and temporal scales in this thesis. Spatial, temporal and the interaction of spatial and temporal factors were all important for identifying significant assemblage differences at all of the sites. Further studies integrating the interaction of spatial and temporal factors into understanding monitoring data sets are vital to understand the patterns of assemblage variability and therefore incorporate into habitat management plans.</p>

Fouling communities of microscopic fungi on various substrates of the Black Sea

Fungi are the most active biodeteriorators of natural and man-made materials. The article presents generalizations of the studies (2001–2019) of communities of microscopic fungi within biofilms on various substrates: shells of live Mytilus (Mytilus galloprovincialis, 670 specimens) and Ostreidae (Crassostrea gigas, 90 specimens), fragments of driftwood (over 7,000), stones (40), concrete of hydrotechnical constructions along the shoreline (80) and wood between concrete blocks in constructions on the shores (80). The studies were carried out in Odessa Oblast, the coastal zone of Sevastopol and open area of the Black Sea. There were identified 123 species of micromycetes, belonging to 65 genera, 33 families, 21 orders, 10 classes, 4 divisions, 2 kingdoms: Fungi and Chromista (fungi-like organisms). The Chromista kingdom was represented by 1 species – Ostracoblabe implexa, on shells of C. gigas. The number of species of micromycetes on various substrates varied 23 (wood between concrete blocks of hydrotechnical constructions) to 74 (shells of M. galloprovincialis at the depths of 3 and 6 m). On all the substrates, the following species were found; Alternaria alternata, Botryotrichum murorum. The communities were found to contain pathogenic fungi Aspergillus fumigatus (shells of mollusks, stones, concrete), A. terreus (concrete), Fusarium oxysporum, Pseudallescheria boydii (shells of mollusks). The best representation was seen for the Pleosporales order – from 12.9% (shells of M. galloprovincialis, 0.3 m depth) to 33.3% (shells of C. gigas) of the species composition. Toxin-producing species of Microascales in mycological communities accounted for 1.6% (driftwood) to 40.0% (concrete), and were also observed on shells of Bivalvia – 11.1–32.3%. Similarity of species composition of mycological communities according to Bray-Curtis coefficient varied 21.1% (driftwood and concrete, 10 shared species) to 72.7% (shells of M. galloprovincialis, the depths of 3 and 7 m and shells of C. gigas, 45 shared species). Using graphs of indices of mean taxonomic distinctness (AvTD, Δ+) and variation (Variation in Taxonomic Distinctness index, VarTD, Λ+), we determined deviations of taxonomic structure of the studied mycological communities from the level of mean expected values, calculated based on the list of species, taking into account their systematic positions. The lowest values of index Δ+ were determined for communities on shells of M. galloprovincialis, 0.3 m depth, driftwood, stones and concrete. These communities had uneven distribution of species according to higher taxonomic ranks and minimum number of the highest taxa: 4–6 classes, 1–2 divisions, Fungi kingdom. Disproportion in species composition with decrease in the number of the highest taxa occurred in extreme environmental conditions. Using index Λ+, we found that the most complex taxonomic structure of fungi communities has developed on concrete and shells of C. gigas. In mycological communities on those substrates, the number of species was low (25 and 46), but they belonged to 4–7 classes, 2–3 divisions, 1–2 kingdoms. To compare the structures of mycological communities that have developed in such substrates in biotopes sea, sea-land-air, land-air, we compiled a list of fungi based on the literature data, which, taking into account our data, comprised 445 species of 240 genera, 103 families, 51 orders, 15 classes, 5 divisions, 2 kingdoms. The analysis revealed that on substrates with similar chemical composition, in all the biotopes, the species of the same divisions dominated (genus and family may vary). Therefore, in the biotope land-air – Hypocreales, Pleosporales, Eurotiales (genera Acremonium, Fusarium, Alternaria, Aspergillus, Penicillium); sea – Pleosporales, Eurotiales, Microascales (Alternaria, Aspergillus, Penicillium, Corollospora); sea-land-air – Pleosporales, Microascales (Alternaria, Leptosphaeria, Aspergillus, Penicillium, Corollospora, Halosarpheia). Monitoring of species composition of myxomycetes is needed in farms that cultivate industrial objects, recreation sites, various buildings for prevention of mycotoxin intoxication and infestation by mycodermatoses and other diseases caused by opportunistic and pathogenic fungi.

A functional analysis reveals extremely low redundancy in global mangrove invertebrate fauna

Deforestation results in habitat fragmentation, decreasing diversity, and functional degradation. For mangroves, no data are available on the impact of deforestation on the diversity and functionality of the specialized invertebrate fauna, critical for their functioning. We compiled a global dataset of mangrove invertebrate fauna comprising 364 species from 16 locations, classified into 64 functional entities (FEs). For each location, we calculated taxonomic distinctness (Δ+), functional richness (FRi), functional redundancy (FRe), and functional vulnerability (FVu) to assess functional integrity. Δ+ and FRi were significantly related to air temperature but not to geomorphic characteristics, mirroring the global biodiversity anomaly of mangrove trees. Neither of those two indices was linked to forest area, but both sharply decreased in human-impacted mangroves. About 60% of the locations showed an average FRe < 2, indicating that most of the FEs comprised one species only. Notable exceptions were the Eastern Indian Ocean and west Pacific Ocean locations, but also in this region, 57% of the FEs had no redundancy, placing mangroves among the most vulnerable ecosystems on the planet. Our study shows that despite low redundancy, even small mangrove patches host truly multifunctional faunal assemblages, ultimately underpinning their services. However, our analyses also suggest that even a modest local loss of invertebrate diversity could have significant negative consequences for many mangroves and cascading effects for adjacent ecosystems. This pattern of faunal-mediated ecosystem functionality is crucial for assessing the vulnerability of mangrove forests to anthropogenic impact and provides an approach to planning their effective conservation and restoration.

Sponge-Associated Polychaetes: Not a Random Assemblage

Polychaetes are among the most common marine organisms, and in many habitats they dominate both in species richness and abundance. They are often found in association with other organisms. Specifically, sponges with their complex three-dimensional internal architecture, are known to host a great diversity of polychaetes. Due to the fact that a large number of sponge-associated polychaete species are known to be common on other substrates, most studies agree that they represent an opportunistic part of the sponge-inhabiting assemblage, without any selection of species tightly associated with sponges. The current study aimed to shed light on polychaetes affinity to sponges. We applied Clarke and Warwick’s taxonomic distinctness indices and test for random assembly, to a dataset compiled of 13 publications that provided polychaete species lists from massive-sponges across the Mediterranean Sea, and compared them with benthic-polychaete species lists from all of the Mediterranean and its zoogeographical regions. These indices are considered to be independent of sampling efforts and setting, and can be applied on presence/absence data, making it possible to compare data from multiple studies. We further compared the trophic structure of sponge-associated polychaetes between the Mediterranean’s zoogeographical regions. Our results show that the trophic structure of the sponge-associated polychaete community, was found to be stable across the entire Mediterranean Sea. Moreover, randomization tests showed that at almost all observational scales (e.g., study, region, Mediterranean) the phylogenetic diversity is not assembled at random, and that sponge-associated polychaete communities are composed of taxonomically related species. These results support the statement that polychaete assemblages inhabiting sponges are not a transient facultative assembly of species, but rather stable, diverse and specialized communities which are well adapted for life in this habitat.

Patterns of richness, diversity and abundance of an odonate assemblage from a tropical dry forest in the Santiago Dominguillo Region, Oaxaca, México (Insecta: Odonata)

A study on the patterns of richness, diversity and abundance of the Odonata from Santiago Dominguillo, Oaxaca is presented here. A total of 1601 specimens from six families, 26 genera and 50 species were obtained through monthly samplings of five days each. Libellulidae was the most diverse family (21 species), followed by Coenagrionidae (19), Gomphidae (4) and Calopterygidae (3). The Lestidae, Platystictidae and Aeshnidae families were the less diverse, with only one species each. Argia was the most speciose genus with 11 species, followed by Enallagma, Hetaerina, Erythrodiplax and Macrothemis with three species each and Phyllogomphoides, Brechmorhoga, Dythemis, Erythemis and Orthemis with two species each. The remaining 17 genera had one species each. Argia pipila Calvert, 1907 and Leptobasis vacillans Hagen in Selys, 1877 were recorded for the first time for the state of Oaxaca. We also analysed the temporal patterns of taxonomic and phylogenetic divergence for the Santiago Dominguillo Odonata assemblage: the Shannon diversity value throughout the year was 21.07 effective species, while the Simpson diversity was 13.17. In general, the monthly phylogenetic divergence was higher than expected for taxonomic distinctness, and lesser for average taxonomic distinctness. Monthly diversity, evenness and taxonomic divergence showed significant positive correlations (from moderate to strong) with monthly precipitation values. The analysis of our results, however, indicates that an increase in rainfall not only influences the temporal diversity of species, but also the identity of supraspecific taxa that constitute those temporal assemblages, i.e. there is an increase in temporal phylogenetic divergence.

The historical biogeography and conservation value of taxonomic distinctness: The case of ferns flora of the Gibraltar Arc

The pteridofloras of nine locations in the Gibraltar Arc were analyzed using a taxonomic distinctness index. We found that the index could be a proxy of historical biogeography of the pteridofloras from this area. Moreover, the value of the taxonomic distinctness index of the different locations showed relevant relationships with certain geographic variables. Finally, we hypothesize about the value of the information derived from taxonomic distinctness index for conservation of the pteridoflora in the Gibraltar Arc.

Habitat and Landform Types Drive the Distribution of Carabid Beetles at High Altitudes

The high altitude mountain slopes of the Dolomites (Italian Alps) are characterized by great habitat and landform heterogeneities. In this paper, we investigated the effect of a Nature 2000 habitat and landform types in driving the high altitude ground beetle (Carabidae) distribution in the Western Dolomites (Brenta group, Italy). We studied the carabid assemblages collected in 55 sampling points distributed in four Nature 2000 habitat types and four landform types located between 1860 and 2890 m above sea level (a.s.l.). Twenty-two species, half of them Alpine endemics, were sampled. Species richness and taxonomic distinctness did not show any significant difference among habitat types; conversely, these differences became significant when the landform type was considered. Total activity density and the frequency of brachypterous, endemic and predatory species showed significant differences between both habitat and landform types. An indicator species analysis identified twelve species linked to a specific habitat type and thirteen species linked to a specific landform type. A canonical correspondence analysis showed that altitude and vegetation cover drove the species distribution in each habitat and landform type while the aspect had a weak effect. Our results highlight the need for a geomorphological characterization of the sampling points when high altitude ground-dwelling arthropods are investigated.

Integrating a morphological description with DNA barcode data of a new species of the genus Pimeliaphilus (Acariformes: Pterygosomatidae) with the analysis of its host specificity and a key to the genus

Pimeliaphilus hemidactyli sp. nov., a new species of the mite genus Pimeliaphilus Trägårdh (Acariformes: Pterygosomatidae), is described from four host species of Hemidactylus: H. murrayi Gleadow (type host), H. frenatus Duméril & Bibron, H. parvimaculatus Deraniyagala and H. leschenaultii Duméril & Bibron (Sauria: Gekkonidae) from India. P. hemidactyli sp. nov. is the most similar to P. sharifi Abdussalam, 1941 and P. insignis (Berlese, 1892); this species can be distinguished from P. sharifi by the presence of 11 dorsal setae on the idiosoma, the absence of leg setae v”GII, v”TrIII and the presence of v’TrIV, and from P. sharifi by the presence of 11 dorsal setae on idiosoma, 1 pair of genital setae and the absence of coxal setae 4c. The standard morphological description of the new species is supplemented with sequencing data for cytochrome c oxidase subunit I (COI) and nuclear ribosomal genes: 18S rDNA and hypervariable region D2 of nuclear 28S rRNA. The present study also addresses specialisation amongst Pimeliaphilus hemidactyli sp. nov. using two measures of host specificity: (1) the number of host species used by the mites species at the study area; and (2) a measure that considers the taxonomic distinctness of the hosts used by the mite, weighted for its prevalence in the different hosts. The results of this study indicate that this species is highly host specific (a stenoxenous species) and that, in the presence of coexisting gecko species, it prefers Murray’s House gecko (H. murrayi) as a host (prevalence of 41%). A historical review of the genus is presented and a key to the genus is constructed.