The nanosized composites based on the natural polysaccharides and nanoparticles of noble metals are promising candidates for efficient antiviral drugs. However, the complexity of such objects, their diversity and novelty necessitate the development of new analytical methods for investigation of such supramolecular architectures. In this work, which was recently developed for SPR-based instrumentation, the concept of variative refraction (DViFA, density variations in fixed architectures) was used to elucidate the mechanism of the antiviral action of a polysaccharide with gold nanoparticles grown in it. The SPR data were confirmed by direct biological tests: the effect of the native polysaccharide glucuronoxylomannan (GXM) obtained from the fungus Ganoderma adspersum and gold nanocomposites thereon on the infection of Datura stramonium with tobacco mosaic virus (TMV) was investigated. Both drugs suppress the development of viral infections. However, if for high concentrations the characteristic activity of the composite is somewhat lower than for GXM, then with an increase in dilution, the effectiveness of the composite increases significantly, up to a twofold excess. It has been reasonably suggested that the mechanism of antiviral action is associated with the formation of clusters of viruses that are no longer capable of infecting cells.