Right out of the gate: the genomics of Lessepsian invaders in the vicinity of the Suez Canal

Marine organisms that enter the Mediterranean from the Red Sea via the Suez Canal are known as Lessepsian bioinvaders. In general, genetic studies of Lessepsian fishes have shown little structure between Red Sea and Mediterranean populations. Yet notable exceptions suggest the importance of life-history factors that may influence patterns of spatial genetic variation. In this study, by sampling two invasive fishes with different life histories (the rabbitfish Siganus rivulatus and the filefish Stephanolepis diaspros), we looked at evidence of population structure and selection at the boundary between the Red Sea and the Mediterranean (the Suez Canal), using thousands of molecular markers. Results illustrate two divergent patterns of genetic patterns, with little genetic structure in S. rivulatus and strong population structure in S. diaspros, even at such small spatial scale. We discuss differences in ecological characteristics between the two species to account for such differences. In addition, we report that in the face of both high (S. rivulatus) and low (S. diaspros) gene flow, loci under selection were uncovered, and some protein coding genes were identified as being involved with osmoregulation, which seems to be an important feature of individuals crossing the salinity-variable Suez Canal. The presence of genes under selection in populations near the Suez Canal supports the idea that selection may be active and essential for successful invasions right out of the gate.

SNP-based Genetic Structure of Tunisian Durum Wheat Landraces and Distribution of the Resistance to Septoria Tritici Blotch

Background: Septoria tritici blotch (STB) has marked durum wheat production worldwide. This fungal disease is until today a challenge for farmers, researchers and breeders all united in the aim of reducing its damage and improving wheat resistance. Tunisian durum wheat landraces were reported to be valuable genetic resources for resistance to biotic and abiotic stresses and are therefore prominently deployed in breeding programs to develop new varieties adapted to fungal diseases as STB and to climate change constraints overall.Results: A total of 366 local durum wheat accessions were assessed for resistance to two virulent Tunisian isolates of Zymoseptoria tritici Tun06 and TM220 under field conditions. Population structure analysis of the durum wheat accessions, performed with 286 polymorphic SNPs (PIC >0.3) covering the entire genome, identified three genetic subpopulations (GS1, GS2 and GS3) with 22% of admixed genotypes. Interestingly, all of the resistant genotypes were among GS2 or admixed with GS2. Conclusions: This study revealed the population structure and the genetic distribution of the resistance to Z. tritici in the Tunisian durum wheat landraces. The grouping pattern of accessions appear to be associated, to some extent, with the geographical pattern of the landraces. We suggested that GS2 accessions were mostly introduced from eastern Mediterranean populations, unlike GS1 and GS3 that originated from the west. Resistant GS2 accessions belonged to landraces Taganrog, Sbei glabre, Richi, Mekki, Badri, Jneh Khotifa and Azizi. Furthermore, we suggested that admixture contributed to transmit STB resistance from GS2 resistant landraces to initially susceptible landraces such as Mahmoudi (GS1), but also resulted in the loss of resistance in the case of GS2 suscpetible Azizi and Jneh Khotifa accessions.

Morphological Traits and Capture Depth of the Norwegian Skate (Dipturus nidarosiensis (Storm, 1881)) from Two Mediterranean Populations

The Norwegian skate Dipturus nidarosiensis (Storm, 1881) has only recently been recorded in the western-central Mediterranean Sea. It was hypothesized a more ancient presence of the species, which has not been detected due to a misidentification with other species of the same genus. This situation could lead to underestimate the risk of a dramatic decline of the spawning stock. In the IUCN Red List, the species is listed as near threatened and considered rare in both the northeast Atlantic and the Mediterranean areas. In the Mediterranean Sea, Norwegian skates were repeatedly caught mostly in two areas between 2005 and 2020: Sardinia Seas and Adriatic-Ionian Seas. In total, 58 specimens were caught, and 28 morphological length measurements were taken on all specimens. The Canonical Discriminant Analysis proved the presence of significant differences only for assemblages made on the basis of the specimen’s area of capture, but not on the basis of sex or ontogenetic development. This analysis could be the first step to highlight the differences between the populations of Norwegian skate in the Mediterranean basin. Moreover, a preliminary analysis of depth of capture was performed as a first step to study this species vertical distribution.

A Generation Shift in Mediterranean Diet Adherence and Its Association with Biological Markers and Health in Dalmatia, Croatia

Previous studies have confirmed the beneficial effect of a Mediterranean diet in mitigating health issues related to cardiovascular disease, diabetes and obesity. However, rapid changes in the traditional way of life and the “westernization” of the diet in Mediterranean populations, especially in younger generations, has led to progressive abandonment of healthy dietary patterns. In order to investigate the generation shift in dietary patterns and lifestyle habits in the Mediterranean part of Croatia, we compared two cohorts of 610 women (266 pregnant and 344 non-pregnant) from the same region, but from different age groups. The MDSS score was derived from food frequency questionnaires. The results showed that the young, reproductively active generation (pregnant women) in Dalmatia, Croatia, although having a higher education and socioeconomic status, exhibits a more adverse eating behaviour (lower adherence to the Mediterranean diet) and lifestyle (excessive smoking in pregnancy) than the older population from the same region. Lower MDSS scores across aggregated age groups in both cohorts showed significant association with higher blood lipid levels and higher smoking frequency. In conclusion, Mediterranean diet adherence is associated with biological markers (age, lipid profile) and lifestyle (smoking) in our study, with a more adverse trend observed in the younger generation.

About the identity of Granulina pusaterii Smriglio & Mariottini, 2003 (Volutoidea: Granulinidae) from the Tunisian Plateau

On the ground of an extensive study of topotypes and of the shell morphology documented in comparable Mediterranean populations, Granulina pusaterii Smriglio & Mariottini, 2003 described from the Tunisian Plateau is proved to belong to the natural variability of G. melitensis Smriglio, Mariottini & Rufini, 1998 and it is proposed as junior synonym name of the latter.

Revision of the species confused with “Nereis falsa” de Quatrefages, 1866 (Annelida, Nereididae)

Nereis falsa de Quatrefages, 1866 has been regarded as a cosmopolitan species, and several species described from different localities have been regarded as junior synonyms of N. falsa. The present study is an attempt to resolve the taxonomic confusion in N. falsa, which seems to contain several distinct species due to previous inappropriate synonymy, widely distributed in the Atlantic and eastern Pacific Oceans. For this purpose, the authors first propose the resurrection of the synonymy of N. falsa with Hediste diversicolor that was concluded during the 19th century but disregarded later. After the fixation of the identity of N. falsa sensu stricto, the authors re-evaluate the proper taxonomic status of species which have previously been confused with N. falsa. Type, topotype and non-type specimens were examined; most species are redescribed, and others are reinstated. Nereis splendida Grube, 1840 is a valid Mediterranean species, and a neotype is proposed; it includes the Mediterranean populations of what is currently regarded as N. falsa. Consequently, N. falsa is transferred to Hediste Malmgren, 1867, and some taxonomic comments are added for the latter genus and a key to species is also included. Nereis callaona Grube & Kröyer in Grube, 1857, N. marginata Grube & Örsted in Grube, 1857 and N. riisei Grube & Örsted in Grube, 1857 are restricted to tropical American shores and are all redescribed. Nereis pelagica lunulata Ehlers, 1901, formerly regarded as a junior synonym of N. falsa by Fauvel (1941), is redescribed and elevated in rank to species level. Nereis lucipeta Ehlers, 1908, formerly regarded as a junior synonym of N. splendida by Ehlers (1913) and of N. falsa by Fauvel (1919), is reinstated. Nereis occidentalis Hartman, 1945 is also redescribed. Furthermore, N. ambigua Treadwell, 1937, formerly regarded as a junior synonym of N. riisei by Monro (1933), deserves to be reinstated. Western Africa specimens recorded as N. falsa are newly described as N. mezianei sp. nov.

The Two Sides of the Mediterranean: Population Genomics of the Black Sea Urchin Arbacia lixula (Linnaeus, 1758) in a Warming Sea

Global environmental changes may have a profound impact on ecosystems. In this context, it is crucial to gather biological and ecological information of the main species in marine communities to predict and mitigate potential effects of shifts in their distribution, abundance, and interactions. Using genotyping by sequencing (GBS), we assessed the genetic structure of a keystone species in the Mediterranean shallow littoral ecosystems, the black sea urchin Arbacia lixula. This bioengineer species can shape their communities due to its grazing activity and it is experiencing an ongoing expansion with increasing temperatures. The population genomic analyses on 5,241 loci sequenced in 240 individuals from 11 Mediterranean sampled populations revealed that all populations were diverse and showed significant departure from equilibrium. Albeit genetic differentiation was in general shallow, a significant break separated the western and eastern Mediterranean populations, a break not detected in previous studies with less resolutive markers. Notably, no clear effect of the Almería-Oran front, an important break in the Atlanto-Mediterranean transition, could be detected among the western basin populations, where only a slight differentiation of the two northernmost populations was found. Despite the generally low levels of genetic differentiation found, we identified candidate regions for local adaptation by combining different genomic analysis with environmental data. Salinity, rather than temperature, seemed to be an important driver of genetic structure in A. lixula. Overall, from a population genomics standpoint, there is ample scope for A. lixula to continue thriving and adapting in the warming Mediterranean.

Arrival and proliferation of the invasive seaweed Rugulopteryx okamurae in NE Atlantic islands

The present study reports the recent occurrence and expansion of Rugulopteryx okamurae in the Azores archipelago (NE Atlantic). Morphological and molecular characters confirmed the species identification. Quick surveys around the island of São Miguel showed that it has successfully colonized the island and is quickly expanding. In some locations, R. okamurae is currently the dominant organism smothering all other benthic biota and posing a serious threat to the benthic ecosystems across the region. The species first record dates from 2019 near the main harbour of the island, suggesting that its introduction was driven by human-assisted transport, via boat ballast waters or adhered to ship hulls and likely originating from the Mediterranean populations that have been proliferating in recent years across the Strait of Gibraltar.

SNP-Based Genetic Structure of Tunisian Durum Wheat Landraces and Distribution of the Resistance to Septoria Tritici Blotch

Background: Septoria tritici blotch (STB) has marked durum wheat production worldwide. This fungal disease is until today a challenge for farmers, researchers and breeders all united in the aim of reducing its damage and improving wheat resistance. Tunisian durum wheat landraces were reported to be valuable genetic resources for resistance to biotic and abiotic stresses and are therefore prominently deployed in breeding programs to develop new varieties adapted to fungal diseases as STB and to climate change constraints overall.Results: A total of 366 local durum wheat accessions were assessed for resistance to two virulent Tunisian isolates of Zymoseptoria tritici Tun06 and TM220 under field conditions. Population structure analysis of the durum wheat accessions, performed with 286 polymorphic SNPs (PIC >0.3) covering the entire genome, identified three genetic subpopulations (GS1, GS2 and GS3) with 22% of admixed genotypes. Interestingly, all of the resistant genotypes were among GS2 or admixed with GS2. Conclusions: This study revealed the population structure and the genetic distribution of the resistance to Z. tritici in the Tunisian durum wheat landraces. The grouping pattern of accessions appear to be associated, to some extent, with the geographical pattern of the landraces. We suggested that GS2 accessions were mostly introduced from eastern Mediterranean populations, unlike GS1 and GS3 that originated from the west. Resistant GS2 accessions belonged to landraces Taganrog, Sbei glabre, Richi, Mekki, Badri, Jneh Khotifa and Azizi. Furthermore, we suggested that admixture contributed to transmit STB resistance from GS2 resistant landraces to initially susceptible landraces such as Mahmoudi (GS1), but also resulted in the loss of resistance in the case of GS2 suscpetible Azizi and Jneh Khotifa accessions.