Belowground Chemical Interactions: An Insight Into Host-Specific Behavior of Globodera spp. Hatched in Root Exudates From Potato and Its Wild Relative, Solanum sisymbriifolium

Understanding belowground chemical interactions between plant roots and plant-parasitic nematodes is immensely important for sustainable crop production and soilborne pest management. Due to metabolic diversity and ever-changing dynamics of root exudate composition, the impact of only certain molecules, such as nematode hatching factors, repellents, and attractants, has been examined in detail. Root exudates are a rich source of biologically active compounds, which plants use to shape their ecological interactions. However, the impact of these compounds on nematode parasitic behavior is poorly understood. In this study, we specifically address this knowledge gap in two cyst nematodes, Globodera pallida, a potato cyst nematode and the newly described species, Globodera ellingtonae. Globodera pallida is a devastating pest of potato (Solanum tuberosum) worldwide, whereas potato is a host for G. ellingtonae, but its pathogenicity remains to be determined. We compared the behavior of juveniles (J2s) hatched in response to root exudates from a susceptible potato cv. Desirée, a resistant potato cv. Innovator, and an immune trap crop Solanum sisymbriifolium (litchi tomato – a wild potato relative). Root secretions from S. sisymbriifolium greatly reduced the infection rate on a susceptible host for both Globodera spp. Juvenile motility was also significantly influenced in a host-dependent manner. However, reproduction on a susceptible host from juveniles hatched in S. sisymbriifolium root exudates was not affected, nor was the number of encysted eggs from progeny cysts. Transcriptome analysis by using RNA-sequencing (RNA-seq) revealed the molecular basis of root exudate-mediated modulation of nematode behavior. Differentially expressed genes are grouped into two major categories: genes showing characteristics of effectors and genes involved in stress responses and xenobiotic metabolism. To our knowledge, this is the first study that shows genome-wide root exudate-specific transcriptional changes in hatched preparasitic juveniles of plant-parasitic nematodes. This research provides a better understanding of the correlation between exudates from different plants and their impact on nematode behavior prior to the root invasion and supports the hypothesis that root exudates play an important role in plant-nematode interactions.

Bionematicides in Brazil: an emerging and challenging market

Management of plant parasitic nematodes in Brazil is a challenge and bionematicides are an important tool in the Integrated Nematode Management in several crops. There are 47 commercial bionematicides with 11 microorganisms as active ingredient available for growers in Brazil; Bacillus spp. are the main biological control agents, but fungi are also important for nematode management. Bionematicides reached 82% of the total market of nematicides in 2019/2020 in Brazil and, in soybean, they represented 90% of the area treated with nematicides. Although, the use of bionematicides is considered an emerging market worldwide, some challenges involve the correct use and formulation of organisms with different modes of action, difficulties in laboratory culturing, and the existence of non-regulated bionematicides, which do not ensure the quality, the purity, and the efficiency in the nematode control under field conditions, leading to lack of control and discredit of this tool. Considering the Brazilian biodiversity richness, a universe of new macroand microorganisms can be explored, as well as the metabolites produced by these organisms as the active ingredient of bionematicides. Expectations of an increase in this market are optimistic and may materialize in light of the increasing demand for biological products in Brazil.

Wheat Production Alters Soil Microbial Profiles and Enhances Beneficial Microbes in Double-Cropping Soybean

Plant-parasitic nematodes represent a substantial constraint on global food security by reducing the yield potential of all major crops. The soybean cyst nematode (SCN) (Heterodera glycines Ichinohe) is widely distributed across important soybean production areas of the U.S., being the major soybean yield-limiting factor, especially in the Midwestern U.S. Double cropped (DC) soybean is commonly planted following winter wheat. We previously reported double-cropping soybean fields with reduced SCN counts compared to fallow at both R1 growth stage (beginning of flowering) (−31.8%) and after soybean harvest (−32.7%). To test if higher counts of beneficial and SCN antagonistic microorganisms could be correlated with the suppression of SCN in fields previously planted with wheat, three field locations with noted SCN suppression were selected for a metagenomics study. Ten subplots were selected (5 wheat and 5 fallow pre-soybean) from each location. A total of 90 soil samples were selected: 3 fields ×2 treatments × 3 timepoints × 5 replications. Three DNA markers targeted distinct microbial groups: bacteria (16S V4-V5), fungi (ITS2), and Fusarium (tef1). Amplicons were sequenced using an Illumina MiSeq platform (300 bp paired-end). Sequencing datasets were processed in R using the DADA2 pipeline. Fungal populations were affected by location in all sampling periods and differed significantly between DC and fallow plots at soybean planting and after harvest (P < 0.001). Several enriched fungal and bacterial taxa in wheat plots, including Mortierella, Exophiala, Conocybe, Rhizobacter spp., and others, were previously reported to parasitize SCN and other plant-parasitic nematodes, suggesting a potential role of beneficial microbes in suppression of SCN in soybean fields double-cropped with wheat.

Studies on plant-parasitic nematodes associated with sweet potato (Ipomoea batatas L., Lam.) in Gombe State, Nigeria

Sweet potato (Ipomoea batatas L., Lam.) is one of the most frequently eaten food crops. Its production is affected by plant-parasitic nematodes as well as biotic factors. This study was conducted to document the different plant-parasitic nematodes (PPN) that limit the gainful production of sweet potato in Gombe State. Thirty soil core samples per hectare were collected at random from sweet potato farms in the three local government areas (Nafada, Kaltungo, and Yamaltu Deba) of Gombe state. The Whitehead and Hemming method and identification keys were used for the soil extraction and genera identification of the plant-parasitic nematodes respectively. A total of 15 plant-parasitic nematodes were recovered throughout the surveyed areas among which 7 are considered major nematode pests of global importance. Irrespective of the surveyed locations, Meloidogyne spp., was found to record the highest population density and prevalence value. The frequency of occurrence in Y/Deba and Nafada LGAs shows that Meloidogyne spp., wasthe most occurring (32 %) genera. In Kaltungo LGA however, Scutellonema spp., and Rotylenchusspp., were the most occurring (17 %) genera. There was a high similarity percentage (≥ 68 %) of PPN genera where 8 genera (Scutellonema spp., Nacobbus spp., Pratylenchus spp., Meloidogyne spp., Heterodera spp., Xiphinema spp., Trichodorus spp., and Rotylenchus spp.) were found to be common amongst the surveyed locations. This is the first report of plant-parasitic nematodes associated with sweet potato in Gombe state, Nigeria. Hence, it is critical to educate farmers in the regions about their effects on the crop and how to successfully manage them.

Effectors of Root-Knot Nematodes: An Arsenal for Successful Parasitism

Root-knot nematodes (RKNs) are notorious plant-parasitic nematodes first recorded in 1855 in cucumber plants. They are microscopic, obligate endoparasites that cause severe losses in agriculture and horticulture. They evade plant immunity, hijack the plant cell cycle, and metabolism to modify healthy cells into giant cells (GCs) – RKN feeding sites. RKNs secrete various effector molecules which suppress the plant defence and tamper with plant cellular and molecular biology. These effectors originate mainly from sub-ventral and dorsal oesophageal glands. Recently, a few non-oesophageal gland secreted effectors have been discovered. Effectors are essential for the entry of RKNs in plants, subsequently formation and maintenance of the GCs during the parasitism. In the past two decades, advanced genomic and post-genomic techniques identified many effectors, out of which only a few are well characterized. In this review, we provide molecular and functional details of RKN effectors secreted during parasitism. We list the known effectors and pinpoint their molecular functions. Moreover, we attempt to provide a comprehensive insight into RKN effectors concerning their implications on overall plant and nematode biology. Since effectors are the primary and prime molecular weapons of RKNs to invade the plant, it is imperative to understand their intriguing and complex functions to design counter-strategies against RKN infection.

Biodiversity and Community Analysis of Plant-Parasitic and Free-Living Nematodes Associated with Maize and Other Rotational Crops from Punjab, Pakistan

Maize (Zea mays L.) is one of Pakistan’s essential staple food crops. Plant-parasitic nematodes (PPNs) are a significant restraint in maize production. However, free-living nematodes (FLNs) provide crucial ecological functions such as suppressing pests and nutrient mineralization. This study aimed to assess the community analysis of plant-parasitic and free-living nematodes associated with maize and other rotational crops (those cultivated in sequence with the maize in the same field) from Punjab, Pakistan. The occurrence percentage was observed per 500 g soil for each nematode genus. The present study revealed that 24 species of plant-parasitic and free-living nematodes were identified from maize crops and other rotational crops from 16 localities through Punjab, Pakistan. Nematode communities were analyzed by absolute frequency, relative frequency, relative density, and prominence value, while cluster analysis was based on the presence or absence of nematode in different localities. The overall proportion of plant-parasitic nematodes was 35%, while free-living soil nematodes recovered 65%, out of 210 samples of maize and other rotational crops. Several major genera of plant-parasitic nematodes were reported during the present study viz., Ditylenchus, Filenchus, Helicotylenchus, Hemicriconemoides, Heterodera, Hoplolaimus, Malenchus, Pratylenchus, Psilenchus, Rotylenchulus, Seinura, Telotylenchus, Tylenchorhynchus, and Xiphinema Community relationship revealed the overall dominance of Heterodera zeae, with the highest incidence (55.71%) followed by Tylenchorhynchus elegans (33.33%) and Helicotylenchus certus (24.76%). The results provide valuable information on the community structure of nematodes in maize and other rotational crops of maize in Punjab, Pakistan. Moreover, this data can be used as a preventive measure before PPN incidence results in greater losses on maize.

Biochemical Analysis Based on Zinc Uptake of Chickpea (Cicer arietinum L.) Varieties Infected by Meloidogyne incognita

The significant constraints in Chickpea (Cicer arietinum L.) production hampers a bit more than 14% global yield loss due to plant-parasitic nematodes. Root-knot nematode (Meloidogyne sp.) is an endoparasite and a significant species affecting the chickpea plant. So, the chemical basis of management is more cost-effective, and pest resurgence building is enhanced in the pathogen. So, ecological-based nematode management is requisite, which also is got hampered due to breeding for resistance against such plant-parasitic nematodes. This was the primary reason to conduct this experiment to enhance resistance in the chickpea plants based on Zinc uptake by using bioagent, Pseudomonas fluorescens alone or in combination. where Different treatments including nematode, bacterium, and chemicals were used sustaining the enhancement of disease resistance in chickpea cultivars, RSG 974, GG 5, GNG 2144. Zinc content of chickpea variety GNG 2144 was found the highest in treatment, when only bacterium (P. fluorescens) was inoculated, i.e., 3.14 mg/100g of root followed by GG 5, i.e., 2.79 mg/100g of root and RSG 974 was, i.e., 2.35 mg/100g of root respectively in a descending order. Application of P. fluorescence combined or alone gradually increased the Zn concentration in roots of chickpea plants compared to healthy check followed by chemical treated plants.

Prevalence and Molecular Diversity of Plant-Parasitic Nematodes of Yam (Dioscorea spp.) in China, with Focus on Merlinius spp.

There is little information about nematode pests associated with yam in China. Between 2020 and 2021, surveys of yam fields were conducted to investigate the abundance and prevalence of plant-parasitic nematodes in major yam growing areas. A total of 110 bulk soil samples from the yam rhizosphere and 48 yam tubers were collected from seven counties in Jiangxi and Shandong provinces. Standard protocols were used to extract nematodes from soil and tubers and identified at the genus level. In this study, 16 species and 13 nematode genera were recorded. The five most prominent species on the yam rhizosphere according to mean population densities were Pratylenchus coffeae (291/individuals), Meloidogyne (262/individuals), Rotylenchulus reniformis (225/individuals), Merlinius (224/individuals), and Helicotylenchus dihystera (171/individuals). In the tubers, the three most prominent species were Pratylenchus coffeae (415/individuals), Meloidogyne (331/individuals), and Rotylenchulus reniformis (115/individuals). These species were verified with appropriate molecular analysis. The high prevalence of the ectoparasite (Merlinius spp.) on the rhizosphere of yam also revealed that Merlinius spp. May be more important to yam than previously thought. Morphological and molecular analyses further confirmed the identity of the species as Merlinius brevidens and were characterized for the first time on yam in China. Minor morphometrical differences (slightly longer body and stylet) were observed in Chinese populations of M. brevidens compared to the original description. Additionally, this study reveals that M. brevidens isolated from China showed a higher nucleotide sequence in the ITS region compared to M. brevidens populations from India. This finding provides baseline information on the nematode pest occurrence on yam in China and calls for effective management.

Efficacy of Beneficial Microbes in Sustainable Management of Plant Parasitic Nematodes: A Review

The soil inhabits many microbes, including plant parasitic nematodes. Plant parasitic nematodes are reported to cause substantial damage to crops which results in yield and economic losses. Chemical control is the most widely used method to control plant parasitic nematodes. However, the consequences of synthetic chemicals are detrimental to human health, animals, and the environment and face so many strict regulatory measures. Synthetic chemicals are also not reliable with their inability to provide long-term protection. Many studies have shown that the use of beneficial fungi and bacteria has the potential to prevent and suppress plant parasitic nematodes while keeping the environment safe. Several experiments have demonstrated that bioproducts of microbial origin are cheap, safe, and provide long-lasting biocontrol effects against pathogens both in vitro and field conditions. Therefore, this review aims to discuss mechanisms that beneficial microbes and their products use to successfully suppress plant parasitic nematodes. The review also explains the importance of using commercial bionematicides in the sustainable management of plant parasitic nematodes. The existing challenges that are limiting the full application of beneficial microbes, and what needs to be done to fully utilize biocontrol agents in the management of plant parasitic nematodes have also been discussed. To the best of our knowledge, this review has come at the right time to give researchers and plant growers more options when several synthetic chemical nematicides are being banned by regulatory authorities due to their hazardous effects.