Abstract
BackgroundBladder cancer (BLCA) is one of the leading causes of cancer deaths in the world, and the molecular mechanism of its pathogenesis is very complicated. Long non-coding RNA (lncRNA) can interact with microRNA (miRNA) through the mechanism of competitive endogenous RNA (ceRNA), and affect the expression of Messenger RNA (mRNA), and affect the pathogenesis of bladder cancer. This study aims to construct the ceRNA-regulated bladder cancer network related to lncRNA and identify a novel lncRNA signature related to the survival prognosis of patients with bladder cancer. It was validated in GEPIA's online bioinformatics network server assists. MethodsThe RNA sequencing data of normal and adjacent bladder cancer tissues are from the Cancer Genome Atlas (TCGA). We identify differentially expressed (DE) genes by comparing gene expression between normal tissues and tumors in the TCGA dataset. Construct a ceRNA network and explore potential biological markers. Based on the ceRNA network, univariate regression analysis and multivariate regression analysis were used to screen out the lncRNA related to the overall survival (OS) of bladder cancer. It was validated in GEPIA's online bioinformatics network server assists. Receiver operating characteristic curve (ROC) analysis was used to evaluate the prognostic value of the risk score.ResultsWe screened out 666 lncRNAs, 160 microRNAs (miRNAs), and 1,820 Messenger RNAs (mRNAs) by comparing normal bladder cancer tissues and adjacent tissues (P<0.05). Then, we constructed a ceRNA regulatory network containing 44 DElncRNA, 22 DEmiRNA, and 52 DEmRNA. The survival analysis of differential genes in the ceRNA network identified 9 lncRNAs, 8 miRNAs, and 12 mRNAs that are associated with the prognosis of BLCA. Cox regression analysis of 9 LncRNAs related to the prognosis of bladder cancer showed that 4 lncRNAs (AC078778.1, ADAMTS9-AS1, ADAMTS9-AS2, and NAV2-AS2) can be independently used as prognostic markers of bladder cancer.ConclusionsBased on the construction of the bladder cancer ceRNA network, a new prognostic signature of four lncRNA-based has been discovered. It will help to better understand the mechanism of bladder cancer occurrence, development and metastasis, and provide direction for future research.