Winter Air Pollution and Genotoxic Effects in Children Living in a Highly Polluted Urban Area

Air pollutants, especially PM, have been found to determine various effects on human health, including genotoxic effects. The aim of this study was to assess DNA damage with micronuclei (MN) and comet tests on buccal cells of 6–8 years old children living in an area with high air pollution. Both tests were repeated in the same children in two consecutive winters to compare the levels of DNA damage under different pollution conditions. A complete data set including lifestyle, air pollutants levels and biological sampling was available for 180 children in the two winters. A high mean MN frequency was found in both seasons, with higher value in the first (0.51 ± 0.59) than the second winter (0.40 ± 0.52), whereas DNA damage measured with comet test showed higher damage in the second versus the first winter (visual score 208.8 ± 67.1 vs. 173.2 ± 50.8). The associations between air pollutant levels (CO, NO2, SO2, benzene, O3, PM10, and PM2.5; PM0.5 and PAHs) and DNA damage were investigated at different lag times, and mainly, no significant association was found. This study on repeated measure of MN frequency and DNA damage in children’s buccal did not show an association with various air pollutants evaluated in an area with high levels of air pollution.

Development and Validation of a Simple Bioaerosol Collection Filter System Using a Conventional Vacuum Cleaner for Sampling

Although numerous bioaerosol samplers for counting and identifying airborne microorganisms are available, the considerably high purchase and maintenance costs for the sampler often prevent broad monitoring campaigns for occupational or environmental surveillance of bioaerosols. We present here a newly developed simple adapter and filter system (TOP filter system) designed to collect bioaerosol particles from a defined air volume using conventional vacuum cleaners as air pumps. We characterized the physical properties of the system using air flow measurements and validated the biological performance. The culture-based detection capacities for airborne fungal species were compared to a standard impaction sampler (MAS-100 NT) under controlled conditions in a bioaerosol chamber (using Trichoderma spores as the test organism) as well as in the field. In the chamber, an overall equivalent detection capacity between all tested filters was recorded, although a significant underrepresentation of the TOP filter system for Trichoderma spores were seen in comparison to the MAS-100 NT. In a comparative field study (n = 345), the system showed similar biological sampling efficiencies compared to the MAS-100 NT impactor, only the diversity of identified fungal communities was slightly lower on the filters. Thus, the system is suitable for large-scale environmental sampling operations where many samples have to be taken in parallel at a given time at distant locations. This system would allow endeavors such as antibiotics resistance monitoring or hygiene surveys in agricultural or occupational settings.

Effects of a Submesoscale Oceanographic Filament on Zooplankton Dynamics in the Arctic Marginal Ice Zone

Submesoscale structures, characterized by intense vertical and horizontal velocities, potentially play a crucial role in oceanographic dynamics and pelagic fluxes. Due to their small spatial scale and short temporal persistence, conditions for in situ measurements are challenging and thus the role of such structures for zooplankton distribution is still unclear. During RV Polarstern expedition PS107 to Arctic Fram Strait in July/August 2017, a submesoscale filament was detected, which initiated an ad hoc oceanographic and biological sampling campaign. To determine zooplankton taxonomic composition, horizontal and vertical distribution, abundance and biomass, vertical MultiNet hauls (depth intervals: 300–200–100–50–10–0 m) were taken at four stations across the filament. Zooplankton data were evaluated in context with the physical-oceanographic observations of the filament to assess submesoscale physical-biological interactions. Our data show that submesoscale features considerably impact zooplankton dynamics. While structuring the pelagial with distinct zooplankton communities in a vertical as well as horizontal dimension, they accumulate abundance and biomass of epipelagic species at the site of convergence. Further, high-velocity jets associated with such dynamics are possibly of major importance for species allocation and biological connectivity, accelerating for instance processes such as the ‘Atlantification’ of the Arctic. Thus, submesoscale features affect the surrounding ecosystem in multiple ways with consequences for higher trophic levels and biogeochemical cycles.

Passive eDNA collection enhances aquatic biodiversity analysis

Environmental DNA (eDNA) metabarcoding is a sensitive and widely used approach for species detection and biodiversity assessment. The most common eDNA collection method in aquatic systems is actively filtering water through a membrane, which is time consuming and requires specialized equipment. Ecological studies investigating species abundance or distribution often require more samples than can be practically collected with current filtration methods. Here we demonstrate how eDNA can be passively collected in both tropical and temperate marine systems by directly submerging filter membranes (positively charged nylon and non-charged cellulose ester) in the water column. Using a universal fish metabarcoding assay, we show that passive eDNA collection can detect fish as effectively as active eDNA filtration methods in temperate systems and can also provide similar estimates of total fish biodiversity. Furthermore, passive eDNA collection enables greater levels of biological sampling, which increases the range of ecological questions that eDNA metabarcoding can address.

Morphometric Relationships in the Blue Swimming Crabs, (Portunus pelagicus) (Linnaeus, 1758) from the Palk Bay, Sri Lanka

The blue swimming crab (Portunus pelagicus) has become the focus of an important export-oriented fishery in Sri Lanka for a decade. The Palk Bay in the Northern coastal waters of Sri Lanka is one of the best-known fishing grounds for blue swimming crabs in Sri Lanka. This study was undertaken with the aim of establishing some morphometric relationships for P. pelagicus in the Palk Bay. Biological sampling was conducted for five consecutive days per month from November 2014 - October 2015 in the Northern landing sites in the Jaffna District where the catch of Palk Bay blue swimming crab fishery was landed. P. pelagicus specimens were also randomly collected for laboratory analysis. The morphometric measurements of the specimens for the following parameters were undertaken: CW - carapace width with the spine, CWW - carapace width without spine, MW – mouth width, TL - total length, LCPL - left chelar propodus length, LMOV - left movable part Length, RMOV - right movable part length, LCPH - left chelar propodus height, RCPH - right chelar propodus height, ABW - abdominal width, ABL - abdominal length and BW - body weight. The least squared method was used to obtain the Length-Length (L-L) and Length-Weight (L-W) relationships. Of the 65 L-L relationships obtained for P. pelagicus from the study, 34 relationships were correlated (r2>0.5). The estimated relationships between BW and CW for males and females were BW=0.0001 CW 3.01 (r2 =0.84) and BW= 0.0001 CW 2.90 (r2 =0.86), respectively. Positive allometric growth was observed for male P. pelagicus, whereas a negative allometric growth was observed for female P. pelagicus. Most of the morphometric relationships of P. pelagicus obtained in this study were not isometric.

A critical review of animal-based welfare indicators for polar bears (Ursus maritimus) in zoos: Identification and evidence of validity

Captive polar bears (Ursus maritimus) are well-documented as being prone to behavioural disorders and, as a result, their welfare is the cause of increasing concern. There is therefore a need for an evidence-based approach to the assessment of the welfare of this species and identification of valid welfare indicators is the first step towards achieving this. To this end, a critical evaluation of peer-reviewed literature was undertaken. Searches of Web of Science and Scopus took place in May 2020 for publications relevant to the welfare of captive polar bears which met inclusion criteria. Further, validity of extracted indicators was assessed via investigation of evidence of content, construct and criterion validity along with strength of evidence at publication-level. Database searches and snow-balling unearthed 46 publications included for review. Identified indicators were sorted into nine behavioural, four physiological (based on physiological or biological sampling) and five physical (based on visual inspection) categories. Among behavioural indicators, the strongest evidence of validity was found for abnormal behaviour. For the physiological indicators, validity was only established for faecal glucocorticoid metabolite concentration. Content validity was assumed for all physical indicators. Generalisability and strength of evidence was generally compromised by low sample sizes and experimental limitations, and only a small number of papers investigated welfare indicators directly, resulting in a paucity of validated indicators. Potential welfare indicators that warrant further validation are highlighted. Overall, this review provides an overview of current valid and promising welfare indicators along with identified gaps in knowledge, relevant for the provision of a methodology for assessing and monitoring welfare of captive polar bears.

Detecting Resistance to Therapeutic ALK Inhibitors in Tumor Tissue and Liquid Biopsy Markers: An Update to a Clinical Routine Practice

The survival of most patients with advanced stage non-small cell lung cancer is prolonged by several months when they are treated with first- and next-generation inhibitors targeting ALK rearrangements, but resistance inevitably emerges. Some of the mechanisms of resistance are sensitive to novel ALK inhibitors but after an initial tumor response, more or less long-term resistance sets in. Therefore, to adapt treatment it is necessary to repeat biological sampling over time to look for different mechanisms of resistance. To this aim it is essential to obtain liquid and/or tissue biopsies to detect therapeutic targets, in particular for the analysis of different genomic alterations. This review discusses the mechanisms of resistance to therapeutics targeting genomic alterations in ALK as well as the advantages and the limitations of liquid biopsies for their identification.

High-Resolution Sampling of a Broad Marine Life Size Spectrum Reveals Differing Size- and Composition-Based Associations With Physical Oceanographic Structure

Observing multiple size classes of organisms, along with oceanographic properties and water mass origins, can improve our understanding of the drivers of aggregations, yet acquiring these measurements remains a fundamental challenge in biological oceanography. By deploying multiple biological sampling systems, from conventional bottle and net sampling to in situ imaging and acoustics, we describe the spatial patterns of different size classes of marine organisms (several microns to ∼10 cm) in relation to local and regional (m to km) physical oceanographic conditions on the Delaware continental shelf. The imaging and acoustic systems deployed included (in ascending order of target organism size) an imaging flow cytometer (CytoSense), a digital holographic imaging system (HOLOCAM), an In Situ Ichthyoplankton Imaging System (ISIIS, 2 cameras with different pixel resolutions), and multi-frequency acoustics (SIMRAD, 18 and 38 kHz). Spatial patterns generated by the different systems showed size-dependent aggregations and differing connections to horizontal and vertical salinity and temperature gradients that would not have been detected with traditional station-based sampling (∼9-km resolution). A direct comparison of the two ISIIS cameras showed composition and spatial patchiness changes that depended on the organism size, morphology, and camera pixel resolution. Large zooplankton near the surface, primarily composed of appendicularians and gelatinous organisms, tended to be more abundant offshore near the shelf break. This region was also associated with high phytoplankton biomass and higher overall organism abundances in the ISIIS, acoustics, and targeted net sampling. In contrast, the inshore region was dominated by hard-bodied zooplankton and had relatively low acoustic backscatter. The nets showed a community dominated by copepods, but they also showed high relative abundances of soft-bodied organisms in the offshore region where these organisms were quantified by the ISIIS. The HOLOCAM detected dense patches of ciliates that were too small to be captured in the nets or ISIIS imagery. This near-simultaneous deployment of different systems enables the description of the spatial patterns of different organism size classes, their spatial relation to potential prey and predators, and their association with specific oceanographic conditions. These datasets can also be used to evaluate the efficacy of sampling techniques, ultimately aiding in the design of efficient, hypothesis-driven sampling programs that incorporate these complementary technologies.