Computed Microtomography (Micro-CT) in the Anatomical Study and Identification of Solenogastres (Mollusca)

Solenogastres are vermiform marine molluscs characterised by an aculiferous mantle, a longitudinal ventral pedal groove and a terminal or subterminal pallial cavity. Their classification is based in part on the type of mantle sclerites, but identification to even the family level generally requires the study of internal anatomical characters. Taxonomically important internal characters include those related to radular structure, the type of ventrolateral glandular organs of the pharynx and the reproductive system, among others. In order to study their internal anatomical organisation, according to the classical reconstruction method, serial histological sections of specimens are made, from which the 2D internal anatomy of the specimen can be reconstructed manually. However, this is a time-consuming technique that results in destruction of the specimen. Computed microtomography or micro-CT is a non-destructive technique based on the measurement of the attenuation of X-rays as they pass through a specimen. Micro-CT is faster than histology for studying internal anatomy and it is non-destructive, meaning that specimens may be used for e.g., DNA extraction or retained as intact vouchers. In this paper, the utility of micro-CT for studying taxonomically important internal anatomical structures was assessed. Results of the 3D anatomical study of the soft parts of four specimens of three species using micro-CT are presented: Proneomenia sluiteriHubrecht, 1880, Dorymenia menchuescribanaeGarcía-Álvarez et al., 2000 and Anamenia gorgonophilaKowalevsky, 1880. Micro-CT enabled detailed study of most taxonomically important anatomical characters, precise measurements of structures, and observation of the relative position of organs from a variety of angles. However, it was not possible to observe the radula and some details of the ventral foregut organs could not be discerned. Despite these limitations, results of this study highlight micro-CT as a valuable tool to compliment histology in the study of solenogaster anatomy and in non-destructively identifying animals to the family and even genus-level.

Virtual histology of archaeological human deciduous prenatal enamel through synchrotron X-ray computed microtomography images

Virtual histology is increasingly utilized to reconstruct the cell mechanisms underlying dental morphology for fragile fossils when physical thin sections are not permitted. Yet, the comparability of data derived from virtual and physical thin sections is rarely tested. Here, the results from archaeological human deciduous incisor physical sections are compared with virtual ones obtained by phase-contrast synchrotron radiation computed microtomography (SRµCT) of intact specimens using a multi-scale approach. Moreover, virtual prenatal daily enamel secretion rates are compared with those calculated from physical thin sections of the same tooth class from the same archaeological skeletal series. Results showed overall good visibility of the enamel microstructures in the virtual sections which are comparable to that of physical ones. The highest spatial resolution SRµCT setting (effective pixel size = 0.9 µm) produced daily secretion rates that matched those calculated from physical sections. Rates obtained using the lowest spatial resolution setup (effective pixel size = 2.0 µm) were higher than those obtained from physical sections. The results demonstrate that virtual histology can be applied to the investigated samples to obtain reliable and quantitative measurements of prenatal daily enamel secretion rates.

Porosity of the porous carbonate rocks in the Jingfengqiao–Baidiao area based on finite automata

This study is based on the processing of computed microtomography images of rock samples. In this study, a finite automation is constructed using the grey value, red-green-blue (RGB) value and Euler number of polarized images of carbonate rocks from the Jingfengqiao–Baidiao area. The finite automaton is used to perform black and white binary processing of the polarized images of the carbonate rocks. The porosity of the carbonate rock is calculated based on the black and white binarization processing results of the polarized images of the carbonate rocks. The obtained porosity is compared with the carbonate porosity obtained by use of the traditional carbonate research method. When the two porosities are close, the image processing threshold of the finite automata is considered to be credible. Based on the finite automata established using the image processing threshold, the black and white binary images of the polarized images of the carbonate rocks are used to establish a rock pore image using I mage J2X. The polarized images of the carbonate rocks are classified according to their RGB values using the finite automata for the porosity classification, and the obtained images are used as textures to paste onto a cube to construct a three-dimensional data model of the carbonate rocks. This study also uses 16S rDNA analysis to verify the formation mechanism of the carbonate pores in the Jingfengqiao–Baidiao area. The results of the 16S rDNA analysis show that the pores in the carbonate rocks in the Jingfengqiao–Baidiao area are closely related to microorganisms, represented by denitrifying bacteria.

Tooth Structure and Replacement of the Triassic Keichousaurus (Sauropterygia, Reptilia) From South China

The small-sized sauropterygian Keichousaurus hui was one of the most abundant marine reptiles from the Triassic Yangtze Sea in South China. Although Keichousaurus has been studied in many aspects, including the osteology, ontogeny, sexual dimorphism, and reproduction, the dentition of this marine reptile was only briefly described in external morphology. In this study, we provide new information on Keichousaurus tooth implantation, histology, and replacement based on a detailed examination of well-preserved specimens collected in the past decades. The tooth histology has been investigated for the first time by analyzing cross-sections of premaxillary teeth and the tooth attachment and implantation have been further revealed by X-ray computed microtomography. We refer the tooth replacement of Keichousaurus to the iguanid replacement type on the basis of the observed invasion of small replacement tooth into the pulp cavity of the functional tooth. Given the resemblance to other extinct and modern piscivorous predators in the morphology and structure of teeth, Keichousaurus might mainly feed on small or juvenile fishes and some relatively soft-bodied invertebrates (e.g., mysidacean shrimps) from the same ecosystem.

Ancient basketry on the inside: X-ray computed microtomography for the non-destructive assessment of small archaeological monocotyledonous fragments: examples from Southeast Europe

This study proposes non-destructive assessment instrumentation, the X-ray MicroCT scanning, to evaluate archaeological basketry remains prior to any destructive analysis. Three case studies are originating from two archaeological sites in Southeast Europe, with three different stages of preservation (poor, sufficient and very good). In addition, there are two preservation modes—charring and desiccation—along with two conservation situations: treated and untreated with conservation agent fragments. The three different scenarios were chosen to explore the potential range of X-ray MicroCT scanning technology when applied to monocotyledonous small-sized archaeological remains. It was proved that this non-invasive X-ray method is particularly suitable for the often-disadvantaged ancient basketry remains.

On the possibility of introducing X-ray computed microtomography into the practice of biostratigraphic research

Currently, the techniques applied for extraction and study of conodonts from siliceous rocks are associated with a number of problems. This makes it difficult to solve many problems in the areas of development of the volcanic and volcanic-sedimentary rocks, where cherts, jaspers, and phtanites are the only sedimentary formations for dating these deposits. On X-ray computed microtomography it is possible to avoid some problems to obtain not only excellent 3-D images of conodonts, but sections in any direction too, as well as in video formats. It is shown that similar results are successful under the hollows after the dissolution of the conodonts. There is no problem in application of X-ray microcomputed tomography when conodonts have been already found on the surface or inside of the sample, or if the content of conodonts in the rock is obviously high. In such a case the scanning without preliminary search is ensured. In cases when conodonts are rare and not obvious, it is proposed the following technique of their discovery. The rock sample is cut into plates. The conodonts are search for on the surface of the plates, moistened with a mixture of glycerin and water under a binocular microscope. If it is necessary (when the rock is opaque), the result is checked by a chemical reaction: 5–10 % hydrochloric acid plus 1–2 crystals of ammonium molybdate are put on the surface of the sample. The appearance of a yellow sediment means the presence of phosphorus, to indicate the probability the detected object to be a conodont. Next, the sample should be washed from acid, its size should be decreased. Then the microtomographic study should be performed.

Characterizing Steel Corrosion in Different Alkali-Activated Mortars

Alkali-activated materials (AAMs) present a promising potential alternative to ordinary Portland cement (OPC). The service life of reinforced concrete structures depends greatly on the corrosion resistance of the steel used for reinforcement. Due to the wide range and diverse properties of AAMs, the corrosion processes of steel in these materials is still relatively unknown. Three different alkali-activated mortar mixes, based on fly ash, slag, or metakaolin, were prepared for this research. An ordinary carbon-steel reinforcing bar was installed in each of the mortar mixes. In order to study the corrosion properties of steel in the selected mortars, the specimens were exposed to a saline solution in wet/dry cycles for 17 weeks, and periodic electrochemical impedance spectroscopy (EIS) measurements were performed. The propagation of corrosion damage on the embedded steel bars was followed using X-ray computed microtomography (mXCT). Periodic EIS measurements of the AAMs showed different impedance response in individual AAMs. Moreover, these impedance responses also changed over the time of exposure. Interpretation of the results was based on visual and numerical analysis of the corrosion damages obtained by mXCT, which confirmed corrosion damage of varying type and extent on steel bars embedded in the tested AAMs.