The aim of the present study is to update the checklist of vascular plants endemic to Mongolia using previous checklists, publications, herbarium collections, and field observations. The revised checklist includes 102 endemic taxa (95 species, five subspecies, and two nothospecies) from 43 genera and 19 families. The majority of endemic taxa were distributed in western and central Mongolia, and high endemic species richness was identified in four phytogeographical regions, namely Mongolian Altai, Khangai, Dzungarian Gobi, and Gobi Altai, which harbor 49, 27, 20, and 16 endemic taxa, respectively. For each endemic taxon, we compiled information about growth form, conservation status (if already assessed), phytogeographical distribution, and voucher specimens. Data on each taxon’s type specimen were also collected, and the majority of the type specimens were accessioned at the LE (58 taxa), MW (20 taxa), and UBA (7 taxa) herbaria.