Biodiversity Monitoring in Mediterranean Marine Protected Areas: Scientific and Methodological Challenges

Biodiversity is a portmanteau word to indicate the variety of life at all levels from genes to ecosystems, but it is often simplistically equated to species richness; the word ecodiversity has thus been coined to address habitat variety. Biodiversity represents the core of the natural capital, and as such needs to be quantified and followed over time. Marine Protected Areas (MPAs) are a major tool for biodiversity conservation at sea. Monitoring of both species and habitat diversity in MPAs is therefore mandatory and must include both inventory and periodic surveillance activities. In the case of inventories, the ideal would be to census all species and all habitats, but while the latter goal can be within reach, the former seems unattainable. Species inventory should be commeasured to investigation effort, while habitat inventory should be based on mapping. Both inventories may profit from suitability spatial modelling. Periodic surveillance actions should privilege conspicuous species and priority habitats. Efficient descriptor taxa and ecological indices are recommended to evaluate environmental status. While it seems obvious that surveillance activities should be carried out with regular recurrence, diachronic inventories and mapping are rarely carried out. Time series are of prime importance to detect marine ecosystem change even in the absence of direct human impacts.

The Need to Establish a Long-Term Ecological Research Network in Morocco as a Tool to Monitor Ecosystems Under Climate Change

Several countries are associated with the long-term ecological research (LTER) program, while others are in the process of joining the network. In Morocco, there is an urgent need to be a member of this network because the diversity of challenges associated with the various ecosystems requires multidisciplinary long-term studies. The chapter discusses this need by assessing the environmental vulnerability of Morocco basing on data from the environmental vulnerability index profile. Ecosystem change and vulnerability were investigated at the sites within the LTER program by exploring the criteria of the selected sites. The driving forces, pressures, states, impacts, responses framework would be a useful approach to study and explain the ecological changes of each selected site. The chapter highlights the purpose, significance, the mission, objectives, and the international cooperation of the proposed LTER network called Mo-LTER.

Assessing Ecosystem Condition: Use and Customization of the Vegetation Departure Metric

Assessment of ecosystem change often focuses on the degree of conversion and representation in networks of protected areas. While essential, these factors alone do not provide a holistic index of ecosystem conditions. Metrics that compare the current state of ecosystems to a meaningful reference condition can help identify “hidden” risks, lost functions, and provide conservation and management-relevant insights. Here we review a departure metric that can be used to measure ecosystem conditions and its implementation for all lands in the United States by the LANDFIRE Program. We then use two case studies to demonstrate how manually calculating the departure metric is used to explore under- and over-representation of structural stages. Finally, we document the assumptions, interpretation, and limitations of the departure metric, and discuss its current and possible future applications.

A paleolimnological investigation of agricultural intensification, water quality and ecosystem change at Lake Nganoke, southern Wairarapa, NZ

<p>Decreasing water quality of lakes as a result of anthropogenic landuse and specifically agricultural intensification is well documented in New Zealand. However, monitoring records of lake health are typically short, only commencing once signs of lake deterioration are observed. The shortness of the instrumental record precludes a detailed understanding of the relationship between landuse change, lake ecosystem trajectories and the effectiveness of mitigation strategies such as riparian planting. Paleolimnological reconstruction from sediment cores has the potential to develop high-resolution time series that may extend lake monitoring centuries into the past. This thesis uses paleoenvironmental reconstruction to investigate lake ecosystem change and water quality in Lake Nganoke, Wairarapa, New Zealand as a result of landuse intensification. The primary aim of this thesis is to reconstruct the past environment of Lake Nganoke from a pre-human reference state to the current day to assess: 1) how increased nutrient fluxes associated with landuse intensification have impacted the lake ecosystem; and 2) the ability of riparian zones to buffer these fluxes. The reconstruction was achieved using a multi proxy approach with pre and post-human environments of Lake Nganoke characterised using Palynology, geochemistry, eDNA and hyperspectral scanning. Māori land clearance was identified at ~AD 1450 (95% CI: AD 1417-1551). The appearance of Pinus pollen and increases in fertilisation and stocking rates placed European arrival at ~AD 1850 (95% CI: 1809 - 1870), while intensification of agricultural landuse occurred post ~AD 1950 (95% CI: 1948 - 1964). The prehuman environment of Lake Nganoke experienced little change, with the catchment dominated by tall trees and likely heavily forested. The lake ecosystem and water quality during this time showed little to no change, with algal productivity likely driven by a constant input of natural nutrients. Post Māori arrival, algal productivity was reduced suggesting an increase in water quality likely driven by added lake marginal plants providing a riparian buffer to terrestrially derived nutrients. Lake productivity increased dramatically post European arrival ~AD 1850, coeval with an increase in sediment Cd, suggesting that fertilisation may have driven a decline in water quality. Further increases in fertilisation and stocking rates indicate additional agricultural nutrient fluxes entering Lake Nganoke in AD 1950 when agriculture intensified. Abundances in denitrifying Gammaproteobacteria indicate increases in nutrient loading while bloom forming Cyanobacteria peak ~AD 2000 before declining till present. Riparian planting following Māori arrival appears sufficient to buffer the lake against increased terrestrial nutrient fluxes associated with land clearing. However, a riparian zone that covers the majority of the catchment post European settlement was inadequate in altering the lake’s degrading ecosystem and water quality trajectory.</p>

A paleolimnological investigation of agricultural intensification, water quality and ecosystem change at Lake Nganoke, southern Wairarapa, NZ

<p>Decreasing water quality of lakes as a result of anthropogenic landuse and specifically agricultural intensification is well documented in New Zealand. However, monitoring records of lake health are typically short, only commencing once signs of lake deterioration are observed. The shortness of the instrumental record precludes a detailed understanding of the relationship between landuse change, lake ecosystem trajectories and the effectiveness of mitigation strategies such as riparian planting. Paleolimnological reconstruction from sediment cores has the potential to develop high-resolution time series that may extend lake monitoring centuries into the past. This thesis uses paleoenvironmental reconstruction to investigate lake ecosystem change and water quality in Lake Nganoke, Wairarapa, New Zealand as a result of landuse intensification. The primary aim of this thesis is to reconstruct the past environment of Lake Nganoke from a pre-human reference state to the current day to assess: 1) how increased nutrient fluxes associated with landuse intensification have impacted the lake ecosystem; and 2) the ability of riparian zones to buffer these fluxes. The reconstruction was achieved using a multi proxy approach with pre and post-human environments of Lake Nganoke characterised using Palynology, geochemistry, eDNA and hyperspectral scanning. Māori land clearance was identified at ~AD 1450 (95% CI: AD 1417-1551). The appearance of Pinus pollen and increases in fertilisation and stocking rates placed European arrival at ~AD 1850 (95% CI: 1809 - 1870), while intensification of agricultural landuse occurred post ~AD 1950 (95% CI: 1948 - 1964). The prehuman environment of Lake Nganoke experienced little change, with the catchment dominated by tall trees and likely heavily forested. The lake ecosystem and water quality during this time showed little to no change, with algal productivity likely driven by a constant input of natural nutrients. Post Māori arrival, algal productivity was reduced suggesting an increase in water quality likely driven by added lake marginal plants providing a riparian buffer to terrestrially derived nutrients. Lake productivity increased dramatically post European arrival ~AD 1850, coeval with an increase in sediment Cd, suggesting that fertilisation may have driven a decline in water quality. Further increases in fertilisation and stocking rates indicate additional agricultural nutrient fluxes entering Lake Nganoke in AD 1950 when agriculture intensified. Abundances in denitrifying Gammaproteobacteria indicate increases in nutrient loading while bloom forming Cyanobacteria peak ~AD 2000 before declining till present. Riparian planting following Māori arrival appears sufficient to buffer the lake against increased terrestrial nutrient fluxes associated with land clearing. However, a riparian zone that covers the majority of the catchment post European settlement was inadequate in altering the lake’s degrading ecosystem and water quality trajectory.</p>

Influence of Late Holocene Climate Change and Human Land Use on Terrestrial and Aquatic Ecosystems in Southwest Madagascar

Madagascar’s biota underwent substantial change following human colonization of the island in the Late Holocene. The timing of human arrival and its role in the extinction of megafauna have received considerable attention. However, the impacts of human activities on regional ecosystems remain poorly studied. Here, we focus on reconstructing changes in the composition of terrestrial and aquatic ecosystems to evaluate the impact of human land use and climate variability. We conducted a paleoenvironmental study, using a sediment record that spans the last ∼1,145 years, collected from a lakebed in the Namonte Basin of southwest Madagascar. We examined physical (X-ray fluorescence and stratigraphy) and biotic indicators (pollen, diatoms and micro- and macro-charcoal particles) to infer terrestrial and aquatic ecosystem change. The fossil pollen data indicate that composition of grasslands and dry deciduous forest in the region remained relatively stable during an arid event associated with northward displacement of the Intertropical Convergence Zone (ITCZ) between ∼1,145 and 555 calibrated calendar years before present (cal yr BP). Charcoal particles indicate that widespread fires occurred in the region, resulting from a combination of climate drivers and human agency during the entire span covered by the paleorecord. Following settlement by pastoral communities and the disappearance of endemic megafauna ∼1,000 cal yr BP, grasslands expanded and the abundance of trees that rely on large animals for seed dispersal gradually declined. A reduction in the abundance of pollen taxa characteristic of dry forest coincided with an abrupt increase in charcoal particles between ∼230 and 35 cal yr BP, when agro-pastoral communities immigrated into the region. Deforestation and soil erosion, indicated by a relatively rapid sedimentation rate and high K/Zr and Fe/Zr, intensified between 180 and 70 cal yr BP and caused a consequent increase in lake turbidity, resulting in more rapid turnover of the aquatic diatom community. Land use and ongoing climate change have continued to transform local terrestrial and freshwater ecosystems during the last ∼70 years. The current composition of terrestrial and aquatic ecosystems reflects the legacy of extinction of native biota, invasion of exotic species, and diminished use of traditional land management practices.

Climate causes shifts in grey seal phenology by modifying age structure

There are numerous examples of phenological shifts that are recognized both as indicators of climate change and drivers of ecosystem change. A pressing challenge is to understand the causal mechanisms by which climate affects phenology. We combined annual population census data and individual longitudinal data (1992–2018) on grey seals, Halicheorus grypus , to quantify the relationship between pupping season phenology and sea surface temperature. A temperature increase of 2°C was associated with a pupping season advance of approximately seven days at the population level. However, we found that maternal age, rather than sea temperature, accounted for changes in pupping date by individuals. Warmer years were associated with an older average age of mothers, allowing us to explain phenological observations in terms of a changing population age structure. Finally, we developed a matrix population model to test whether our observations were consistent with changes to the stable age distribution. This could not fully account for observed phenological shift, strongly suggesting transient modification of population age structure, for example owing to immigration. We demonstrate a novel mechanism for phenological shifts under climate change in long-lived, age- or stage-structured species with broad implications for dynamics and resilience, as well as population management.

Shifting Baselines to Thresholds: Reframing Exploitation in the Marine Environment

Current research on anthropogenic impacts on marine ecosystems often relies on the concept of a “baseline,” which aims to describe ecosystems prior to human contact. Recent research is increasingly showing that humans have been involved in marine ecosystems for much longer than previously understood. We propose a theoretical framework oriented around a system of “thresholds” referring to system-wide changes in human culture, ecosystem dynamics, and molecular evolution. The concept of the threshold allows conceptual space to account for the fluid nature of ecosystems throughout time while providing a critical framework for understanding drivers of ecosystem change. We highlight practical research approaches for exploring thresholds in the past and provide key insights for future adaptation to a changing world. To ensure ecological and societal goals for the future are met, it is critical that research efforts are contextualized into a framework that incorporates human society as integral to ecology and evolution.