Actin-microtubule dynamic composite forms responsive active matter with memory

Active cytoskeletal materials in vitro demonstrate self-organising properties similar to those observed in their counterparts in cells. However, the search to emulate phenomena observed in the living matter has fallen short of producing a cytoskeletal network that would be structurally stable yet possessing adaptive plasticity. Here, we address this challenge by combining cytoskeletal polymers in a composite, where self-assembling microtubules and actin filaments collectively self-organise due to the activity of microtubules-percolating molecular motors. We demonstrate that microtubules spatially organise actin filaments that in turn guide microtubules. The two networks align in an ordered fashion using this feedback loop. In this composite, actin filaments can act as structural memory and, depending on the concentration of the components, microtubules either write this memory or get guided by it. The system is sensitive to external stimuli suggesting possible autoregulatory behaviour in changing mechanochemical environment. We thus establish artificial active actin-microtubule composite as a system demonstrating architectural stability and plasticity.

Dinitrohydrazines and Interaction of Them with Some Group-II Metals - DFT Treatment

Dinitrohydrazines and interaction of them with some group-II metals have been considered within the restrictions of density functional theory and the basis set applied (B3LYP/6-311++G(d,p)). Dinitrohydrazine has two isomers as geminal and vicinal. The calculations reveal that both of them are structurally stable. The vicinal form electronically is more stable and thermo chemically more favorable than the other isomer. The beryllium magnesium and calcium (1:1) composites of them are considered. The results indicate that only the beryllium composites (geminal and vicinal) are structurally intact while the others undergo decomposition due to reductive cleavage by the metals. The decompositions occurred exhibit variations from one composite to the other.

Amphipathic Engineering of Magnetic Composites Reinforced with Ion-Copolymers-Activated Protein-Bioconjugate Functionalized Surface

Structurally stable, multifunctional ion-copolymer composites with enhanced ionic, hydrophilic and hydrophobic properties are developed utilizing multimodal materials. These hyperbranched polymeric composites function as strong supports in multifunctional applications. The integration...

Allosteric Determinants of the SARS-CoV-2 Spike Protein Binding with Nanobodies: Examining Mechanisms of Mutational Escape and Sensitivity of the Omicron Variant

Structural and biochemical studies have recently revealed a range of rationally engineered nanobodies with efficient neutralizing capacity against SARS-CoV-2 virus and resilience against mutational escape. In this study, we performed a comprehensive computational analysis of the SARS-CoV-2 spike trimer complexes with Nb6, VHH E and bi-paratopic VHH VE nanobodies. We combined atomistic dynamics and collective motions analysis with binding free energy scanning, perturbation-response scanning and network centrality analysis to examine mechanisms of nanobody-induced allosteric modulation and cooperativity in the SARS-CoV-2 spike trimer complexes with these nanobodies. By quantifying energetic and allosteric determinants of the SARS-CoV-2 spike protein binding with nanobodies, we also examined nanobody-induced modulation of escaping mutations and the effect of the Omicron variant on nanobody binding. The mutational scanning analysis supported the notion that E484A mutation can have a significant detrimental effect on nanobody binding and result in Omicron-induced escape from nanobody neutralization. Our findings showed that SARS-CoV-2 spike protein may exploit plasticity of specific allosteric hotspots to generate escape mutants that alter response to binding without compromising activity. The network analysis supported these findings showing that VHH VE nanobody binding can induce long-range couplings between the cryptic binding epitope and ACE2-binding site through a broader ensemble of communication paths that is less dependent on specific mediating centers and therefore may be less sensitive to mutational perturbations of functional residues. The results suggest that binding affinity and long-range communications of the SARS-CoV-2 complexes with nanobodies can be determined by structurally stable regulatory centers and conformationally adaptable hotspots that are allosterically coupled and collectively control resilience to mutational escape.

Mixed Protonic-Electronic Conductivity of SrCe1-xPrxO3- δ

Protonic conductors are gaining use in solid oxide fuel cells (SOFCs) and electrolysis cells (SOECs) as well as for H2 separation membranes. However, for SOFC/SOEC electrode and membrane applications their performance is limited by low electronic conductivity. One of the most promising classes of ceramic proton conductors, perovskites, have highly-tunable compositions allowing for the optimization of both ionic and electronic conductivity. In this work Pr-doped SrCeO3 was studied over a wide range of oxygen partial pressures (pO2’s) and temperatures to determine its defect properties and conductivity. Under reducing conditions Pr-doped SrCeO3 was found to be chemically and structurally stable, with an optimal Pr doping level of 10%. This composition shows greater conductivity compared to previously reported Eu-doped SrCeO3. Under low pO2 Pr-doped SrCeO3 exhibited n-type behavior as conductivity increased with decreasing pO2, suggesting that the electronic conductivity of SrCeO3 is significantly enhanced by Pr doping. Under high pO2 conditions, Pr-doped SrCeO3 exhibited p-type conductivity with higher conductivity in the presence of water affirming its protonic conductivity. This work validates the use of Pr as a means of enhancing electronic conductivity in proton conducting perovskites.

Synthesis, structure and thermal stability of a mesoporous titanium(III) amine containing MOF with improved hydrogen sorption properties

The first mesoporous bimetallic TiIII/Al metal-organic framework (MOF) containing amine functionalities on its linkers has been selectively obtained by converting the cheap commercially available (TiCl3)3AlCl3 into Ti3-xAlxCl3(THF)3 and reacting this complex with 2-aminoterephthalic acid in DMF under soft solvothermal conditions. This compound is structurally related to the previously described NH2-MIL-101(M) (M = Cr, Al and Fe) MOFs. Thermal gravimetric analyses and in situ PXRD measurements demonstrated that this highly air-sensitive TiIII-containing MOF is structurally stable up to 200°C. Nuclear magnetic resonance (NMR) spectroscopy, elemental and inductively-coupled plasma (ICP) analyses revealed that NH2-MIL-101(TiIII) contains trinuclear Ti3(μ3-O)Cl(DMF)2(RCOO)6 clusters with strongly bound DMF molecules, and a small amount of aluminum. Sorption experiments reveal a higher affinity of this MOF for hydrogen compared to the previously described monometallic unfunctionalized MIL-101(TiIII) MOF.

Design Rule for Constructing Buckling-Free Polymeric Stencil with Microdot Apertures

A polymeric stencil with microdot apertures made by using polydimethylsiloxane (PDMS) molds with pillar patterns has many advantages, including conformal contact, easy processability, flexibility, and low cost compared to conventional silicon-based membranes. However, due to the inherent deformability of PDMS materials in response to external pressure, it is challenging to construct structurally stable stencils with high structural fidelity. Here, we propose a design rule on the buckling pressure for constructing polymeric stencils without process failure. To investigate the critical buckling pressure (Pcr), stencils are fabricated by using different PDMS molds with aspect ratio variations (AR: 1.6, 2.0, 4.0, and 5.3). By observing the buckled morphology of apertures, the structures can be classified into two groups: low (AR 1.6 and 2.0) and high (AR 4.0 and 5.3) AR groups, and Pcr decreases as AR increases in each group. To investigate the results theoretically, the analysis based on Euler’s buckling theory and slenderness ratio is conducted, indicating that the theory is only valid for the high-AR group herein. Besides, considering the correction factor, Pcr agrees well with the experimental results.

Redox/pH-Responsive 2-in-1 Chimeric Nanoparticles for the Co-Delivery of Doxorubicin and siRNA

The co-delivery of chemotherapy drugs and gene-suppressing small interfering RNA (siRNA) show promise for cancer therapy. The key to the clinical realization of this treatment model will be the development of a carrier system enabling the simultaneous delivery (“co-delivery” instead of combinatorial delivery) of chemotherapy and siRNA agents to cancer. In this study, a co-delivery system was developed from two individual components to form one integrated nanovehicle through a redox-sensitive thiol–disulfide bond for the synergistic delivery of chemotherapy and RNA silencing: doxorubicin (Dox)-loaded N,O-carboxymethyl chitosan (NOCC) complex with a thiolated hyaluronic acid (HA-SH) nanocarrier and dopamine (Dopa)-conjugated thiolated hyaluronic acid (SH-HA-Dopa)-coated calcium phosphate (CaP)-siRNA nanocarrier. The 2-in-1 chimeric nanoparticles (NPs) were structurally stable together in the storage environment and in the circulation. This smart system selectively releases Dox and siRNA into the cytosol. Furthermore, equipped with the tumor-targeting component HA, the co-delivery system shows specific targeting and high cellular uptake efficiency by receptor-mediated endocytosis. In summary, these dual-responsive (redox and pH), tumor-targeting smart 2-in-1 chimeric NPs show promise to be employed in functional co-delivery and tumor therapy.

Combined effects of double mutations on catalytic activity and structural stability contribute to clinical manifestations of glucose-6-phosphate dehydrogenase deficiency

Glucose-6-phosphate dehydrogenase (G6PD) deficiency is the most common enzymopathy in humans, affecting ~ 500 million worldwide. A detailed study of the structural stability and catalytic activity of G6PD variants is required to understand how different mutations cause varying degrees of enzyme deficiency, reflecting the response of G6PD variants to oxidative stress. Furthermore, for G6PD double variants, investigating how two mutations jointly cause severe enzyme deficiency is important. Here, we characterized the functional and structural properties of nine G6PD variants: G6PD Gaohe, G6PD Mahidol, G6PD Shoklo, G6PD Canton, G6PD Kaiping, G6PD Gaohe + Kaiping, G6PD Mahidol + Canton, G6PD Mahidol + Kaiping and G6PD Canton + Kaiping. All variants were less catalytically active and structurally stable than the wild type enzyme, with G6PD double mutations having a greater impact than single mutations. G6PD Shoklo and G6PD Canton + Kaiping were the least catalytically active single and double variants, respectively. The combined effects of two mutations were observed, with the Canton mutation reducing structural stability and the Kaiping mutation increasing it in the double mutations. Severe enzyme deficiency in the double mutants was mainly determined by the trade-off between protein stability and catalytic activity. Additionally, it was demonstrated that AG1, a G6PD activator, only marginally increased G6PD enzymatic activity and stability.