Computational Methods in Systems Biology - Lecture Notes in Computer Science
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Published By Springer International Publishing

9783319129815, 9783319129822

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Using Process Algebra to Model Radiation Induced Bystander Effects

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_14 ◽

2014 ◽

pp. 196-210 ◽

Author(s):

Rachel Lintott ◽

Stephen McMahon ◽

Kevin Prise ◽

Celine Addie-Lagorio ◽

Carron Shankland

Keyword(s):

Process Algebra ◽

Bystander Effects ◽

Radiation Induced

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Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_5 ◽

2014 ◽

pp. 61-72 ◽

Author(s):

Fabian Fröhlich ◽

Fabian J. Theis ◽

Jan Hasenauer

Keyword(s):

Dynamical Systems ◽

Uncertainty Analysis ◽

Profile Likelihoods

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XTMS in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_21 ◽

2014 ◽

pp. 256-259

Author(s):

Baudoin Delépine ◽

Pablo Carbonell ◽

Jean-Loup Faulon

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Exploring the Cellular Objective in Flux Balance Constraint-Based Models

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_15 ◽

2014 ◽

pp. 211-224 ◽

Author(s):

Rafael S. Costa ◽

Son Nguyen ◽

Andras Hartmann ◽

Susana Vinga

Keyword(s):

Flux Balance ◽

Constraint Based Models

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Optimization Based Design of Synthetic Oscillators from Standard Biological Parts

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_16 ◽

2014 ◽

pp. 225-238 ◽

Author(s):

Irene Otero-Muras ◽

Julio R. Banga

Keyword(s):

Optimization Based Design

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FM-Sim: Protocol Definition, Simulation and Rate Inference for Neuroscience Assays

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_19 ◽

2014 ◽

pp. 248-251

Author(s):

Donal Stewart ◽

Stephen Gilmore ◽

Michael A. Cousin

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Characterization of Reachable Attractors Using Petri Net Unfoldings

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_10 ◽

2014 ◽

pp. 129-142 ◽

Author(s):

Thomas Chatain ◽

Stefan Haar ◽

Loïg Jezequel ◽

Loïc Paulevé ◽

Stefan Schwoon

Keyword(s):

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Improved Parameter Estimation in Kinetic Models: Selection and Tuning of Regularization Methods

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_4 ◽

2014 ◽

pp. 45-60 ◽

Author(s):

Attila Gábor ◽

Julio R. Banga

Keyword(s):

Parameter Estimation ◽

Kinetic Models ◽

Regularization Methods

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Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_6 ◽

2014 ◽

pp. 73-85 ◽

Author(s):

Fabian Fröhlich ◽

Sabrina Hross ◽

Fabian J. Theis ◽

Jan Hasenauer

Keyword(s):

Uncertainty Analysis ◽

Radial Basis Function ◽

Basis Function ◽

Radial Basis ◽

Function Approximations

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Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions

Computational Methods in Systems Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-12982-2_8 ◽

2014 ◽

pp. 99-113 ◽

Author(s):

Bing Liu ◽

Soonho Kong ◽

Sicun Gao ◽

Paolo Zuliani ◽

Edmund M. Clarke

Keyword(s):

Cell Hybrid ◽

Hybrid Models ◽

Cardiac Cell ◽

Parameter Synthesis

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