Morphometric and morphological characterization of chicken resources adapted to pastoral and agropastoral areas of southern Ethiopia

Thirteen qualitative and six quantitative variables taken from 303 adult chickens (95 cocks and 208 hens) from three locations/districts were used to phenotypically characterize the indigenous chicken populations in pastoral areas of South Omo Zone, Ethiopia. The studied traits were influenced by the effect of location and sex, where chicken populations from Hamer district and females of all districts were the smallest and lightest. Qualitative characteristics of the studied chicken populations such as normal feather morphology and distribution, plain plumage pattern, flat head shape, triangular body shape, and dominant red eye, earlobe and plumage colour suggest that they constitute previously undescribed populations. Chest circumference, wingspan and body length were the three most important morphometric traits used in discriminating the studied chicken populations. On average, 61% of the sampled populations were classified correctly into their respective locations. The multivariate analysis results discriminate the chicken populations into two groups: the Hamer group and the Omo group (chickens from Bena Tsemay and Male districts). However, such grouping should be confirmed and advanced to ecotype level using further genetic characterization studies as the observed phenotypic differences might be due to genetic or environmental variations. Such confirmation is important to design breeding programmes (for sustainable utilization) specific to each ecotype.

Estimation of genetic erosion on Ethiopian tetraploid wheat landraces using different approaches

The demand and use of improved crop varieties by farmers has increased in the central highlands of Ethiopia, where continuous loss of local traditional varieties has been occurring in the last two to three decades. The objectives of the study were to assess the extent of genetic erosion and perception of farmers and associated causes for the reduction of traditional farmers' varieties. Direct field assessment covering 56 wheat farms and a survey in which 149 farmers participated were carried out in three districts of central Ethiopia. Based on data collected during direct farm assessment, the loss of genotypes was found to be 88% in Ada followed by 80% and 60% in Lume and Gimbichu districts, respectively. The farmer survey indicated an even greater loss of diversity of100% in Ada followed by Lume (93%) and Gimbichu (67%). Diseases and pests as well as shorter growing seasons associated with climate change were identified as main causes for farmers to switch to modern varieties. The expansion of high yielding improved bread and durum wheat varieties also contributed to gradually replace local durum wheat varieties by local farmers of these districts. Overall, genetic erosion of tetraploid wheat varied among the three districts of central Ethiopia. Reductions in the number of farmers and area coverage in the study districts could be used as good indicators for the existence of genetic erosion.

West African Crop Wild Relative Checklist, Prioritization and Inventory

Crop wild relatives (CWR) are wild plant taxa genetically related to domesticated crops with trait diversity that can be used in plant breeding to sustain food security. Prioritization is a prerequisite for the cost–effective conservation of CWR as it allows CWR in a checklist to be reduced to a manageable number for active conservation action. In this study, a partial CWR checklist comprising 1651 taxa was compiled for West Africa. Prioritization of the annotated CWR checklist was based on three criteria: (i) economic value of the related crop in West Africa, (ii) CWR genetic closeness to its related crop and (iii) threat status. After applying the three criteria using the parallel method of prioritization, 102 priority CWR were selected for active conservation action. The priority CWR are related to food crops that are nationally, regionally and globally important, such as white guinea yam (Dioscorea cayenensis subsp. rotundata (Poir) J. Miège), cassava (Manihot esculenta Crantz), rice (Oryza sativa L.), wheat (Triticum aestivum L.), cowpea (Vigna unguiculata (L.) Walp.), sweet potato (Ipomea batatas (L.) Lam.), common bean (Phaseolus vulgaris L.) and sorghum (Sorghum bicolor (L.) Moench). This CWR checklist and prioritization will help in the development of a regional conservation action plan for West Africa.

Teak genetic diversity in Ghana shows a narrow base for further breeding and a need for improved international collaboration for provenance exchange.

We evaluated the genetic diversity of teak provenances at a newly established provenance trial with 52 provenances collected from Africa, South America and Asia in Tain II Forest Reserve in Central Ghana. This provenance collection / trial was established to widen the genetic basis for Teak establishment in West Africa. Using Genotyping by Sequencing (GBS) we analysed the genetic diversity of these provenances. Results of the study revealed that, although acquired from a wide geographical range, most Teak provenances in the trial belong to only two distinct groups that are closely related. The implication of this finding is that, for breeding, a wider range of provenances are needed from the original Teak distribution areas and more specifically from Southern India. We conclude that urgent protection of older existing sources of genetic variation in Teak as well as an improvement of international collaboration under the Nagoya protocol with countries with native teak populations is necessary.

History and impact of a bean (Phaseolus spp., Leguminosae, Phaseoleae) collection

This work explains the reasons why a bean collection was established in 1973 at the International Center of Tropical Agriculture (CIAT) near Palmira in Colombia. It shows the impact of the collection on plant breeding and in agricultural development through the distribution of germplasm to the center’s bean breeding program, to successively find resistances to pests and diseases, adaptation to low phosphorus and drought, and more recently higher content of iron and zinc in seeds. The collection was also used to progress knowledge in biological sciences, as shown by a dozen of examples. A reason behind these successes was foresight and focus on diversity per se in the collection. The paper ends with a number of suggestions for the way ahead for the genetic resources conservation and management of these bean crops, and possible take-home lessons for curators in charge of other similar collections.

Local breeds and pastoral farming on the North Mediterranean shore: a univocal coevolution? An example of dairy sheep farming systems in Corsica (France) and Thessaly (Greece)

Using local resources for ruminant feeding is a way to achieve agroecological production in pastoral farming systems. In North Mediterranean countries, sheep farming systems have evolved towards more intensive systems in lowland and hilly areas, whereas remote and rough pastureland is abandoned and local breeds are rarely maintained; rather, they are progressively replaced by highly productive breeds and their crosses. Using the examples of Corsica (France) and Thessaly (Greece), two dairy sheep farming territories developing intensive farming systems that differ in the livestock breeds they use, we explored the hypothesis that the use of local breeds may not be systematically related to the maintenance of pastoral practices in Mediterranean dairy sheep farming systems. For this purpose, three data sets based on interviews with sheep farmers of local breeds and crossbred flocks were analysed in two study areas. The results demonstrated that local breeds’ adaptive abilities can be used in crossbred flocks or purebred flocks to maintain a feeding system based on pastoral components. However, other drivers also appear to lead into the declining use of local pastoral resources. Apart from the use of local breeds, year-to-year adjustments of replacement and culling rates sometimes have to be applied in order to address the inter-annual variations of the fodder on offer. This paper provides an original approach to studying the link between local breeds and the pastoral components of farming systems by combining synchronic and diachronic analyses of the practices in crossbred and purebred flocks composed of local breeds.

‘Zeitoun Ennour’: A new olive (Olea europaea L.) cultivar in Tunisia with high oil quality

An olive breeding program was started in Tunisia in 1993 in order mainly to improve the fatty acid composition of the local cultivar ‘Chemlali Sfax’. ‘Zeitoun Ennour’ is a new cultivar obtained from a cross between ‘Chemlali Sfax’ and the local dual-purpose use cultivar ‘Chemchali Gafsa’. The morphological study of this cultivar showed that eleven characters dealing with fruit and endocarp differed from ‘Chemlali Sfax’, mainly regarding to their respective weights. This new cultivar had the same sensitivity to Verticillium dahliae Kleb and earlier bearing than the original variety. Its olive production was considered as high as for ‘Chemlali Sfax’ but with partial self-compatibility and late maturity. The new cultivar realized a net improvement in comparison with the original cultivar particularly regarding its fatty acid composition with very high oleic acid content (>75 %) and low palmitic and linoleic acid contents (<10 %). The new cultivar was recently released and will be available for growers as soon as possible.

‘Zeitoun Ennour’: A new olive (Olea europaea L.) cultivar in Tunisia with high oil quality

An olive breeding program was started in Tunisia in 1993 in order mainly to improve the fatty acid composition of the local cultivar ‘Chemlali Sfax’. ‘Zeitoun Ennour’ is a new cultivar obtained from a cross between ‘Chemlali Sfax’ and the local dual-purpose use cultivar ‘Chemchali Gafsa’. The morphological study of this cultivar showed that eleven characters dealing with fruit and endocarp differed from ‘Chemlali Sfax’, mainly regarding to their respective weights. This new cultivar had the same sensitivity to Verticillium dahliae Kleb and earlier bearing than the original variety. Its olive production was considered as high as for ‘Chemlali Sfax’ but with partial self-compatibility and late maturity. The new cultivar realized a net improvement in comparison with the original cultivar particularly regarding its fatty acid composition with very high oleic acid content (>75 %) and low palmitic and linoleic acid contents (<10 %). The new cultivar was recently released and will be available for growers as soon as possible.

Biodiversity assessment of African locust bean (Parkia biglobosa) accessions from Savanna and Forest zones of Nigeria as revealed by seed storage proteins and RAPD markers

Understanding the level and distribution of genetic diversity in African locust bean (Parkia biglobosa) would strengthen breeding and conservation programmes towards domestication and sustainable use of this species. Sixteen accessions of P. globosa were assessed for variability based on seed morphology, seed protein and DNA profiling. Significant variation in seed characteristics were observed across locations. Seed protein profiling by SDS-PAGE revealed homogeneity as most bands were found common in all accessions, indicating that the protein profiles are highly conserved. Protein profiling separated the 16 accessions into four major clusters at 0.93 similarity coefficient. Most accessions grouping into Cluster 1 had a similarity coefficient of close to 100% and were from the Derived Savanna suggesting the presence of duplicates. Accessions NH/2016/P14, NH/2016/P03 and NH/2016/P04 grouped into clusters II, III and IV; respectively. Sixteen RAPD markers generated a total of 256 bands of which 63.67% were polymorphic. Gene diversity ranged from 0.41 to 0.93 and Polymorphic Information Content (PIC) from 0.39 to 0.93. The RAPD-based dendrogram separated accessions into six groups at 0.68 similarity coefficient. Based on a polymorphic seed storage protein marker a genetically distinct accession NH/2016/P04 could be exploited for breeding purposes. The homogeneity of alleles and narrow genetic base as revealed by RAPD and SDS-PAGE analyses suggests possible loss of intraspecific genetic diversity. Thus, intensification of germplasm collections across the different agroecological zones and characterization using specific markers will give a better understanding of diversity of P. biglobosa in order to enhance selection towards conservation, breeding and sustainable utilization.

Genetic diversity and population structure among indigenous and imported goat breeds in Kenya

Population structure and relationship information among goats is critical for genetic improvement, utilization, and conservation. This study explored population structure and level of introgression among four goat breeds in Kenya: the indigenous Galla (n = 12) and three imported breeds, the Alpine (n = 29), Toggenburg (n = 31), and Saanen (n = 24). Genetic diversity was analyzed using four indices (polymorphic SNPs, mean allele frequency, observed and expected heterozygosity and inbreeding coefficient) within each breed. Population structure assessed using model-based clustering (ADMIXTURE) revealed four breeds according to their geographic regions in Kenya. Kenyan Alpine goats were the most admixed breed with about 10 % of its genome derived from Galla, 10 % and 6 % from Saanen and Toggenburg respectively. The association of Galla with other breeds was anticipated since the Galla breed was used as the founder population for crossbreeding with Saanen, Alpine and Toggenburg breeds. The relationship information evaluated by computing Reynolds genetic distance revealed five distinctive clusters: Alpine, Galla, Saanen, Toggenburg and some mixture of Alpine and Toggenburg. Saanen and Galla breeds seem to be the most genetically distinct among the sampled populations. The genetic variation among the goat populations observed will provide a good opportunity for sustainable utilization, conservation, and future genetic resource improvement programmes in goat breeds in Kenya.