scholarly journals Water orientation and dynamics in the closed and open influenza B virus M2 proton channels

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Martin D. Gelenter ◽  
Venkata S. Mandala ◽  
Michiel J. M. Niesen ◽  
Dina A. Sharon ◽  
Aurelio J. Dregni ◽  
...  

AbstractThe influenza B M2 protein forms a water-filled tetrameric channel to conduct protons across the lipid membrane. To understand how channel water mediates proton transport, we have investigated the water orientation and dynamics using solid-state NMR spectroscopy and molecular dynamics (MD) simulations. 13C-detected water 1H NMR relaxation times indicate that water has faster rotational motion in the low-pH open channel than in the high-pH closed channel. Despite this faster dynamics, the open-channel water shows higher orientational order, as manifested by larger motionally-averaged 1H chemical shift anisotropies. MD simulations indicate that this order is induced by the cationic proton-selective histidine at low pH. Furthermore, the water network has fewer hydrogen-bonding bottlenecks in the open state than in the closed state. Thus, faster dynamics and higher orientational order of water molecules in the open channel establish the water network structure that is necessary for proton hopping.

2020 ◽  
Author(s):  
Makiko TAKECHI ◽  
Shinya NAGASAKI ◽  
Kibo Nagasaki

In this study, the functions of some segments of coronavirus were cleared by the comparison of homology among genes and proteins of influenza A and influenza B virus and SARS-CoV-2/covid-19(coronavirus). In addition, it is shown of existence of the identity segments across three viruses .It is suggested the possibility of being created that a new DNA vaccine ,a new RNA vaccine and a new medicine against common parts will be made which are effective against three viruses.Relative high homology among them suggests a possibility that people who were suffered from influenza A or influenza B infection within these from 1 to 2 years would be mildly affected by coronavirus.However, the influenza vaccine is an inactivated vaccine. The influenza vaccine is consisting of NTR (non translated region). It was proved the vaccine is not effective for the treatment of coronavirus infection.On the other hand, in particular, coronavirus segment 9 has a protein close of NP 1.2.3) (nucleocapsid protein) in influenza B virus, and coronavirus segment 11 has a protein close of NA1.2.3) and NB3) which are influenza A or B virus surface protein encoded in the lipid membrane of the virus particles. The result of this study is shown that the possibility of the anti-influenza medicine is effective for medication for the coronavirus infection until the specific medicine for coronavirus infection is approved.


2013 ◽  
Vol 19 (3) ◽  
pp. 511-512 ◽  
Author(s):  
Rogier Bodewes ◽  
Danny Morick ◽  
Gerrie de Mutsert ◽  
Nynke Osinga ◽  
Theo Bestebroer ◽  
...  

PLoS ONE ◽  
2015 ◽  
Vol 10 (1) ◽  
pp. e0116302 ◽  
Author(s):  
Nipaporn Tewawong ◽  
Kamol Suwannakarn ◽  
Slinporn Prachayangprecha ◽  
Sumeth Korkong ◽  
Preeyaporn Vichiwattana ◽  
...  

Vaccines ◽  
2021 ◽  
Vol 9 (7) ◽  
pp. 800
Author(s):  
Jongsuk Mo ◽  
Stivalis Cardenas-Garcia ◽  
Jefferson J. S. Santos ◽  
Lucas M. Ferreri ◽  
C. Joaquín Cáceres ◽  
...  

Influenza B virus (IBV) is a major respiratory pathogen of humans, particularly in the elderly and children, and vaccines are the most effective way to control it. In previous work, incorporation of two mutations (E580G, S660A) along with the addition of an HA epitope tag in the PB1 segment of B/Brisbane/60/2008 (B/Bris) resulted in an attenuated strain that was safe and effective as a live attenuated vaccine. A third attempted mutation (K391E) in PB1 was not always stable. Interestingly, viruses that maintained the K391E mutation were associated with the mutation E48K. To explore the contribution of the E48K mutation to stability of the K391E mutation, a vaccine candidate was generated by inserting both mutations, along with attenuating mutations E580G and S660A, in PB1 of B/Bris (B/Bris PB1att 4M). Serial passages of the B/Bris PB1att 4M vaccine candidate in eggs and MDCK indicated high stability. In silico structural analysis revealed a potential interaction between amino acids at positions 48 and 391. In mice, B/Bris PB1att 4M was safe and provided complete protection against homologous challenge. These results confirm the compensatory effect of mutation E48K to stabilize the K391E mutation, resulting in a safer, yet still protective, IBV LAIV vaccine.


2019 ◽  
Vol 73 (6) ◽  
pp. 1423-1436
Author(s):  
Tipu Sultan ◽  
Zeshan Ahmad ◽  
Khazar Hayat

2006 ◽  
Vol 152 (2) ◽  
pp. 415-422 ◽  
Author(s):  
J.-M. Chen ◽  
Y.-J. Guo ◽  
K.-Y. Wu ◽  
J.-F. Guo ◽  
M. Wang ◽  
...  

Vaccine ◽  
2003 ◽  
Vol 21 (25-26) ◽  
pp. 3867-3874 ◽  
Author(s):  
G.M Vodeiko ◽  
J McInnis ◽  
V Chizhikov ◽  
R.A Levandowski

Virology ◽  
1984 ◽  
Vol 139 (1) ◽  
pp. 178-184 ◽  
Author(s):  
Michael W. Shaw ◽  
Purnell W. Choppin

2012 ◽  
Vol 205 (6) ◽  
pp. 895-905 ◽  
Author(s):  
Christopher D. Paddock ◽  
Lindy Liu ◽  
Amy M. Denison ◽  
Jeanine H. Bartlett ◽  
Robert C. Holman ◽  
...  

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