scholarly journals Saharan dust nutrients promote Vibrio bloom formation in marine surface waters

2016 ◽  
Vol 113 (21) ◽  
pp. 5964-5969 ◽  
Author(s):  
Jason R. Westrich ◽  
Alina M. Ebling ◽  
William M. Landing ◽  
Jessica L. Joyner ◽  
Keri M. Kemp ◽  
...  
Keyword(s):  
Microbial Community ◽  
Surface Waters ◽  
Fold Increase ◽  
Field Studies ◽  
Marine Ecology ◽  
Saharan Dust ◽  
Bloom Formation ◽  
Marine Surface ◽  
Nutrient Influx

Vibrio is a ubiquitous genus of marine bacteria, typically comprising a small fraction of the total microbial community in surface waters, but capable of becoming a dominant taxon in response to poorly characterized factors. Iron (Fe), often restricted by limited bioavailability and low external supply, is an essential micronutrient that can limit Vibrio growth. Vibrio species have robust metabolic capabilities and an array of Fe-acquisition mechanisms, and are able to respond rapidly to nutrient influx, yet Vibrio response to environmental pulses of Fe remains uncharacterized. Here we examined the population growth of Vibrio after natural and simulated pulses of atmospherically transported Saharan dust, an important and episodic source of Fe to tropical marine waters. As a model for opportunistic bacterial heterotrophs, we demonstrated that Vibrio proliferate in response to a broad range of dust-Fe additions at rapid timescales. Within 24 h of exposure, strains of Vibrio cholerae and Vibrio alginolyticus were able to directly use Saharan dust–Fe to support rapid growth. These findings were also confirmed with in situ field studies; arrival of Saharan dust in the Caribbean and subtropical Atlantic coincided with high levels of dissolved Fe, followed by up to a 30-fold increase of culturable Vibrio over background levels within 24 h. The relative abundance of Vibrio increased from ∼1 to ∼20% of the total microbial community. This study, to our knowledge, is the first to describe Vibrio response to Saharan dust nutrients, having implications at the intersection of marine ecology, Fe biogeochemistry, and both human and environmental health.

scholarly journals Rates of primary production in groundwater rival those in oligotrophic marine systems

2021 ◽  
Author(s):  
Will A Overholt ◽  
Susan Trumbore ◽  
Xiaomei Xu ◽  
Till L V Bornemann ◽  
Alexander J Probst ◽  
...  
Keyword(s):  
Primary Production ◽  
Surface Waters ◽  
Carbon Fixation ◽  
Euphotic Zone ◽  
Rate Data ◽  
Carbonate Aquifer ◽  
Marine Systems ◽  
Marine Surface ◽  
Terrestrial Subsurface

The terrestrial subsurface contains nearly all of Earth's freshwater reserves and harbors upwards of 60% of our planet's total prokaryotic biomass. While genetic surveys suggest these organisms rely on in situ carbon fixation, rather than the translocation of photosynthetically derived organic carbon, corroborating measurements of carbon fixation in the subsurface are absent. Using a novel ultra-low level 14C-labeling technique, we show that in situ carbon fixation rates in a carbonate aquifer reached 10% of the median rates measured in oligotrophic marine surface waters, and were up to six-fold greater than those observed in lower euphotic zone waters where deep chlorophyll levels peak. Empirical carbon fixation rates were substantiated by both nitrification and anammox rate data. Metagenomic analyses revealed a remarkable abundance of putative chemolithoautotrophic members of an uncharacterized order of Nitrospiria - the first representatives of this class expected to fix carbon via the Wood-Ljungdahl pathway. Based on these fixation rates, we extrapolate global primary production in carbonate groundwaters to be 0.11 Pg of carbon per year.

scholarly journals Incorporation of Glucose under Anoxic Conditions by Bacterioplankton from Coastal North Sea Surface Waters

2005 ◽  
Vol 71 (4) ◽  
pp. 1709-1716 ◽  
Author(s):  
Cecilia Alonso ◽  
Jakob Pernthaler
Keyword(s):  
North Sea ◽  
Surface Waters ◽  
Anaerobic Metabolism ◽  
Strictly Aerobic ◽  
Phylogenetic Groups ◽  
Anoxic Conditions ◽  
Membrane Filters ◽  
Coastal Marine ◽  
Marine Surface

ABSTRACT It has been hypothesized that the potential for anaerobic metabolism might be a common feature of bacteria in coastal marine waters (L. Riemann and F. Azam, Appl. Environ. Microbiol. 68: 5554-5562, 2002). Therefore, we investigated whether different phylogenetic groups of heterotrophic picoplankton from the coastal North Sea were able to take up a simple carbon source under anoxic conditions. Oxic and anoxic incubations (4 h) or enrichments (24 h) of seawater with radiolabeled glucose were performed in July and August 2003. Bacteria with incorporated substrate were identified by using a novel protocol in which we combined fluorescence in situ hybridization and microautoradiography of cells on membrane filters. Incorporation of glucose under oxic and anoxic conditions was found in α-Proteobacteria, γ-Proteobacteria, and the Cytophaga-Flavobacterium cluster of the Bacteroidetes at both times, but not in marine Euryarchaeota. In July, the majority of cells belonging to the α-proteobacterial Roseobacter clade showed tracer incorporation both in oxic incubations and in oxic and anoxic enrichments. In August, only a minority of the Roseobacter cells, but most bacteria affiliated with Vibrio spp., were able to incorporate the tracer under either condition. A preference for glucose uptake under anoxic conditions was observed for bacteria related to Alteromonas and the Pseudoalteromonas-Colwellia group. These genera are commonly considered to be strictly aerobic, but facultatively fermentative strains have been described. Our findings suggest that the ability to incorporate substrates anaerobically is widespread in pelagic marine bacteria belonging to different phylogenetic groups. Such bacteria may be abundant in fully aerated coastal marine surface waters.

scholarly journals On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre

2019 ◽  
Vol 85 (14) ◽  
Author(s):  
Greta Reintjes ◽  
Halina E. Tegetmeyer ◽  
Miriam Bürgisser ◽  
Sandi Orlić ◽  
Ivo Tews ◽  
...  
Keyword(s):  
Microbial Community ◽  
Next Generation Sequencing ◽  
Surface Waters ◽  
South Pacific ◽  
Analysis Pipeline ◽  
Targeted Sampling ◽  
Cell Enumeration ◽  
South Pacific Gyre ◽  
Generation Sequencing

ABSTRACTThe South Pacific Gyre (SPG) covers 10% of the ocean’s surface and is often regarded as a marine biological desert. To gain an on-site overview of the remote, ultraoligotrophic microbial community of the SPG, we developed a novel onboard analysis pipeline, which combines next-generation sequencing with fluorescencein situhybridization and automated cell enumeration. We tested the pipeline during the SO-245 “UltraPac” cruise from Chile to New Zealand and found that the overall microbial community of the SPG was highly similar to those of other oceanic gyres. The SPG was dominated by 20 major bacterial clades, including SAR11, SAR116, the AEGEAN-169 marine group, SAR86,Prochlorococcus, SAR324, SAR406, and SAR202. Most of the bacterial clades showed a strong vertical (20 m to 5,000 m), but only a weak longitudinal (80°W to 160°W), distribution pattern. Surprisingly, in the central gyre,Prochlorococcus, the dominant photosynthetic organism, had only low cellular abundances in the upper waters (20 to 80 m) and was more frequent around the 1% irradiance zone (100 to 150 m). Instead, the surface waters of the central gyre were dominated by the SAR11, SAR86, and SAR116 clades known to harbor light-driven proton pumps. The alphaproteobacterial AEGEAN-169 marine group was particularly abundant in the surface waters of the central gyre, indicating a potentially interesting adaptation to ultraoligotrophic waters and high solar irradiance. In the future, the newly developed community analysis pipeline will allow for on-site insights into a microbial community within 35 h of sampling, which will permit more targeted sampling efforts and hypothesis-driven research.IMPORTANCEThe South Pacific Gyre, due to its vast size and remoteness, is one of the least-studied oceanic regions on earth. However, both remote sensing andin situmeasurements indicated that the activity of its microbial community contributes significantly to global biogeochemical cycles. Presented here is an unparalleled investigation of the microbial community of the SPG from 20- to 5,000-m depths covering a geographic distance of ∼7,000 km. This insight was achieved through the development of a novel onboard analysis pipeline, which combines next-generation sequencing with fluorescencein situhybridization and automated cell enumeration. The pipeline is well comparable to onshore systems based on the Illumina platforms and yields microbial community data in less than 35 h after sampling. Going forward, the ability to gain on-site knowledge of a remote microbial community will permit hypothesis-driven research, through the generation of novel scientific questions and subsequent additional targeted sampling efforts.

scholarly journals Effects of Saharan dust on the microbial community during a large in situ mesocosm experiment in the NW Mediterranean Sea

2011 ◽  
Vol 62 (2) ◽  
pp. 201-213 ◽  
Author(s):  
M Laghdass ◽  
S Blain ◽  
M Besseling ◽  
P Catala ◽  
C Guieu ◽  
...  
Keyword(s):  
Microbial Community ◽  
Mediterranean Sea ◽  
Mesocosm Experiment ◽  
Saharan Dust ◽  
Nw Mediterranean ◽  
Nw Mediterranean Sea

Post-Hurricane Michael damage assessment using ADCIRC storm surge hindcast, image classification, and LiDAR

Shore & Beach ◽  
2019 ◽  
pp. 3-14 ◽  
Author(s):  
Joshua Davis ◽  
Diana Mitsova ◽  
Tynon Briggs ◽  
Tiffany Briggs
Keyword(s):  
Wave Energy ◽  
Field Studies ◽  
Feedback Mechanism ◽  
Water Velocity ◽  
Airborne Lidar ◽  
Storm Events ◽  
Magnetic Current ◽  
Coastal Mapping ◽  
Electro Magnetic

Wave forcing from hurricanes, nor’easters, and energetic storms can cause erosion of the berm and beach face resulting in increased vulnerability of dunes and coastal infrastructure. LIDAR or other surveying techniques have quantified post-event morphology, but there is a lack of in situ hydrodynamic and morphodynamic measurements during extreme storm events. Two field studies were conducted in March 2018 and April 2019 at Bethany Beach, Delaware, where in situ hydrodynamic and morphodynamic measurements were made during a nor’easter (Nor’easter Riley) and an energetic storm (Easter Eve Storm). An array of sensors to measure water velocity, water depth, water elevation and bed elevation were mounted to scaffold pipes and deployed in a single cross-shore transect. Water velocity was measured using an electro-magnetic current meter while water and bed elevations were measured using an acoustic distance meter along with an algorithm to differentiate between the water and bed during swash processes. GPS profiles of the beach face were measured during every day-time low tide throughout the storm events. Both accretion and erosion were measured at different cross-shore positions and at different times during the storm events. Morphodynamic change along the back-beach was found to be related to berm erosion, suggesting an important morphologic feedback mechanism. Accumulated wave energy and wave energy flux per unit area between Nor’easter Riley and a recent mid-Atlantic hurricane (Hurricane Dorian) were calculated and compared. Coastal Observations: JALBTCX/NCMP emergency-response airborne Lidar coastal mapping & quick response data products for 2016/2017/2018 hurricane impact assessments

Coliform transport in a pristine reservoir: modeling and field studies

1998 ◽  
Vol 37 (2) ◽  
pp. 137-144 ◽  
Author(s):  
Elisa Garvey ◽  
John E. Tobiason ◽  
Michael Hayes ◽  
Evelyn Wolfram ◽  
David A. Reckhow ◽  
...  
Keyword(s):  
Model Development ◽  
Fate And Transport ◽  
Field Studies ◽  
Meteorological Conditions ◽  
Reservoir Modeling ◽  
Vertical Circulation ◽  
Quality Model ◽  
Circulation Patterns ◽  
In Situ Experiments

This paper reports on field studies and model development aimed at understanding coliform fate and transport in the Quabbin Reservoir, an oligotrophic drinking water supply reservoir. An investigation of reservoir currents suggested the importance of wind driven phenomena, and that both lateral and vertical circulation patterns exist. In-situ experiments of coliform decay suggested dependence on light intensity and yielded an appropriate decay coefficient to be used in CE-QUAL-W2, a two-dimensional hydrodynamic and water quality model. Modeling confirmed the sensitivity of reservoir outlet concentration to vertical variability within the reservoir, meteorological conditions, and location of coliform source.

Real-life Field Studies of the NOx Removing Properties of Photocatalytic Surfaces in Roskilde and Copenhagen Airport, Denmark

2020 ◽  
Vol 01 ◽  
Author(s):  
Henrik Jensen ◽  
Pernille D. Pedersen
Keyword(s):  
Air Quality ◽  
High Stability ◽  
Reference Site ◽  
Real Life ◽  
Field Studies ◽  
The Real ◽  
Before And After ◽  
Parking Lot ◽  
Photocatalytic Concrete

Aims: To evaluate the real-life effect of photocatalytic surfaces on the air quality at two test-sites in Denmark. Background: Poor air quality is today one of the largest environmental issues, due to the adverse effects on human health associated with high levels of air pollution, including respiratory issues, cardiovascular disease (CVD), and lung cancer. NOx removal by TiO2 based photocatalysis is a tool to improve air quality locally in areas where people are exposed. Methods: Two test sites were constructed in Roskilde and Copenhage airport. In Roskilde, the existing asphalt at two parking lots was treated with TiO2 containing liquid and an in-situ ISO 22197-1 test setup was developed to enable in-situ evaluation of the activity of the asphalt. In CPH airport, photocatalytic concrete tiles were installed at the "kiss and fly" parking lot, and NOx levels were continuously monitored in 0.5 m by CLD at the active site and a comparable reference site before and after installation for a period of 2 years. Results: The Roskilde showed high stability of the photocatalytic coating with the activity being largely unchanged over a period of 2 years. The CPH airport study showed that the average NOx levels were decreased by 12 % comparing the before and after NOx concentrations at the active and reference site. Conclusion: The joined results of the two Danish demonstration projects illustrate a high stability of the photocatalytic coating as well as a high potential for improvements of the real-life air quality in polluted areas.

scholarly journals Performance of a Handheld Chlorophyll-a Fluorometer: Potential Use for Rapid Algae Monitoring

Water ◽  
2021 ◽  
Vol 13 (10) ◽  
pp. 1409
Author(s):  
Hamdhani Hamdhani ◽  
Drew E. Eppehimer ◽  
David Walker ◽  
Michael T. Bogan
Keyword(s):  
Chlorophyll A ◽  
Surface Waters ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Water Quality Monitoring ◽  
Ambient Light ◽  
Calibration Equation ◽  
Field Samples ◽  
Potential Use

Chlorophyll-a measurements are an important factor in the water quality monitoring of surface waters, especially for determining the trophic status and ecosystem management. However, a collection of field samples for extractive analysis in a laboratory may not fully represent the field conditions. Handheld fluorometers that can measure chlorophyll-a in situ are available, but their performance in waters with a variety of potential light-interfering substances has not yet been tested. We tested a handheld fluorometer for sensitivity to ambient light and turbidity and compared these findings with EPA Method 445.0 using water samples obtained from two urban lakes in Tucson, Arizona, USA. Our results suggested that the probe was not sensitive to ambient light and performed well at low chlorophyll-a concentrations (<25 µg/L) across a range of turbidity levels (50–70 NTU). However, the performance was lower when the chlorophyll-a concentrations were >25 µg/L and turbidity levels were <50 NTU. To account for this discrepancy, we developed a calibration equation to use for this handheld fluorometer when field monitoring for potential harmful algal blooms in water bodies.

scholarly journals An Autonomous Platform for Near Real-Time Surveillance of Harmful Algae and Their Toxins in Dynamic Coastal Shelf Environments

2021 ◽  
Vol 9 (3) ◽  
pp. 336
Author(s):  
Stephanie K. Moore ◽  
John B. Mickett ◽  
Gregory J. Doucette ◽  
Nicolaus G. Adams ◽  
Christina M. Mikulski ◽  
...  
Keyword(s):  
Real Time ◽  
Domoic Acid ◽  
Harmful Algae ◽  
Coastal Trapped Waves ◽  
Resource Managers ◽  
Bloom Formation ◽  
High Concentrations ◽  
Data Gap ◽  
Autonomous Technology

Efforts to identify in situ the mechanisms underpinning the response of harmful algae to climate change demand frequent observations in dynamic and often difficult to access marine and freshwater environments. Increasingly, resource managers and researchers are looking to fill this data gap using unmanned systems. In this study we integrated the Environmental Sample Processor (ESP) into an autonomous platform to provide near real-time surveillance of harmful algae and the toxin domoic acid on the Washington State continental shelf over a three-year period (2016–2018). The ESP mooring design accommodated the necessary subsystems to sustain ESP operations, supporting deployment durations of up to 7.5 weeks. The combination of ESP observations and a suite of contextual measurements from the ESP mooring and a nearby surface buoy permitted an investigation into toxic Pseudo-nitzschia spp. bloom dynamics. Preliminary findings suggest a connection between bloom formation and nutrient availability that is modulated by wind-forced coastal-trapped waves. In addition, high concentrations of Pseudo-nitzschia spp. and elevated levels of domoic acid observed at the ESP mooring location were not necessarily associated with the advection of water from known bloom initiation sites. Such insights, made possible by this autonomous technology, enable the formulation of testable hypotheses on climate-driven changes in HAB dynamics that can be investigated during future deployments.

Growth, nisA Gene Expression, and In Situ Activity of Novel Lactococcus lactis subsp. cremoris Costarter Culture in Commercial Hard Cheese Production

2017 ◽  
Vol 80 (12) ◽  
pp. 2137-2146 ◽  
Author(s):  
Dimitrios Noutsopoulos ◽  
Athanasia Kakouri ◽  
Eleftheria Kartezini ◽  
Dimitrios Pappas ◽  
Efstathios Hatziloukas ◽  
...  
Keyword(s):  
Gene Expression ◽  
Lactococcus Lactis ◽  
Starter Culture ◽  
Fold Increase ◽  
Raw Milk ◽  
Good Growth ◽  
Lactococcus Lactis Subsp ◽  
Quantitative Expression ◽  
Hard Cheese

ABSTRACT This study evaluated in situ expression of the nisA gene by an indigenous, nisin A–producing (NisA+) Lactococcus lactis subsp. cremoris raw milk genotype, represented by strain M78, in traditional Greek Graviera cheeses under real factory-scale manufacturing and ripening conditions. Cheeses were produced with added a mixed thermophilic and mesophilic commercial starter culture (CSC) or with the CSC plus strain M78 (CSC+M78). Cheeses were sampled after curd cooking (day 0), fermentation of the unsalted molds for 24 h (day 1), brining (day 7), and ripening of the brined molds (14 to 15 kg each) for 30 days in a fully controlled industrial room (16.5°C; 91% relative humidity; day 37). Total RNA was directly extracted from the cheese samples, and the expression of nisA gene was evaluated by real-time reverse transcription PCR (qRT-PCR). Agar overlay and well diffusion bioassays were correspondingly used for in situ detection of the M78 NisA+ colonies in the cheese agar plates and antilisterial activity in whole-cheese slurry samples, respectively. Agar overlay assays showed good growth (&gt;8 log CFU/g of cheese) of the NisA+ strain M78 in coculture with the CSC and vice versa. The nisA expression was detected in CSC+M78 cheese samples only, with its expression levels being the highest (16-fold increase compared with those of the control gene) on day 1, followed by significant reduction on day 7 and almost negligible expression on day 37. Based on the results, certain intrinsic and mainly implicit hurdle factors appeared to reduce growth prevalence rates and decrease nisA gene expression, as well as the nisin A–mediated antilisterial activities of the NisA+ strain M78 postfermentation. To our knowledge, this is the first report on quantitative expression of the nisA gene in a Greek cooked hard cheese during commercial manufacturing and ripening conditions by using a novel, rarely isolated, indigenous NisA+ L. lactis subsp. cremoris genotype as costarter culture.

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