The diversity and functional capacity of microbes associated with coastal phototrophs

Coastal marine phototrophs exhibit some of the highest rates of primary productivity in the world. They have been found to host a diverse set of microbes, many of which may impact the biology of their phototroph hosts through metabolisms that are unique to microbial taxa. Here we characterized the metabolic functions of phototroph-associated microbial communities using metagenomes collected from 2 species of kelp (Laminaria setchellii and Nereocystis luetkeana) and 3 marine angiosperms (Phyllospadix scouleri, P. serrulatus and Zostera marina), including the rhizomes of two surfgrass species (Phyllospadix spp.) and the seagrass Zostera marina, and the sediments surrounding P. scouleri and Z. marina. Using metagenomic sequencing, we describe 72 metagenome assembled genomes (MAGs) that potentially benefit from being associated with macrophytes and may contribute to macrophyte fitness through their metabolic gene content. All host-associated metagenomes contained genes for the use of dissolved organic matter from hosts and vitamin (B1, B2, B7, B12) biosynthesis. Additionally, we found a range of nitrogen metabolism genes that transform dissolved inorganic nitrogen into forms that may be more available to the host. The rhizosphere of surfgrass and seagrass contained genes for anaerobic microbial metabolisms, including nifH genes associated with nitrogen fixation, despite residing in a well-mixed and oxygenated environment. The range of oxygen environments engineered by macrophytes likely explains the diversity of both oxidizing and reducing microbial metabolisms, and contributes to the functional capabilities of microbes and their influence on carbon and nitrogen cycling in nearshore ecosystems.

Trends and Composition—A Sedimentological-Chemical-Mineralogical Approach to Constrain the Origin of Quaternary Deposits and Landforms—From a Review to a Manual

In this study, six basic Quaternary landform series (LFS) and their sedimentary deposits (LFS1 aeolian, LFS 2.1 to 2.2 mass wasting, LFS 3 cryogenic-glacial, LFS 4.1 to 4.6 fluvial, LFS 5.1 to 5.2 coastal-marine, LFS 6.1 to 6.3 lacustrine) are subdivided into subtypes and examined with regard to their sedimentological parameters and their mineralogical and chemical compositions. Emphasis is placed on the textural (related to transport and deposition), compositional (sediment load/weight, Eh and pH) and geodynamic maturity of the sedimentary deposits which are influenced by the parent lithology and bedrock tectonic and by the climate during the last 2 Ma. To constrain the development of the LFS and their sediments, composite trend-line diagrams are designed combining sedimentological (x-axis) and chemical/mineralogical dataset (y-axis): (1) sorting vs. heavy mineral content; (2) sphericity of grains vs. silica/carbonate contents; and (3) median vs. Ti/Fe ratios. In addition, the x-y plots showing the log SiO2/Al2O3 vs. log Na2O/K2O are amended by a dataset of the three most common clay minerals, i.e., kaolinite-, mica-, and smectite-group clay minerals. Such joint sedimentological-chemical-mineralogical investigations focused on the depositional environment of unconsolidated clastic sediments of Quaternary age can be used to describe the economic geology and environmental geology of mineral deposits in the pre-Quaternary sedimentary series according to the phrase: “The Present is the key to the Past”. Both trend diagrams and compositional x-y plots can contribute to constraining the development of the full transect of landform series from the fluvial incision and slope retreat to reef islands fringing the coastal zone towards the open sea as far as they are built up of clastic sedimentary deposits enriched in siliceous and/or carbonate minerals. Climate zonation and crustal maturity are the exogenous and endogenous “drivers”, as can be deduced from the compositional (mineralogy and chemistry) and physical (transport and deposition) variations observed in the Quaternary sediments. The current study bridges the gap between a review only based on literature and a hybrid manual generated by practical field studies devoted to applied geosciences in economic and environmental geology (“E & E issue”).

Economic Evaluation of Posidonia oceanica Ecosystem Services along the Italian Coast

This study reports the quantification and analysis of the ecosystem services (ESs) value of Posidonia oceanica (L.) Delile (1813) meadows in Italy (Liguria, Tuscany, Latium, Campania, Calabria, Apulia, Sardinia, and Sicily regions). The ES evaluation method of P. oceanica meadows applied in this study was obtained from a previous study in which the site-specific approach for the definition of the benefits and services was applied. The distribution of P. oceanica and the ESs economic value have been managed through an open-source geographic information system (QGIS), focusing on five essential ESs: carbon sequestration, bioremediation, oxygen production, erosion protection, and food production. The average value of the ESs obtained on the Italian national scale is €21,660.5 ha−1 yr−1, which is comparable with the values reported in the international literature concerning P. oceanica ESs. The results of this study confirm that the economic evaluation of ESs is an essential tool for the management of the coastal marine environment, especially considering the modularity of the applied approach. The value of the total benefits, considering the entire extension of the national P. oceanica meadows, represents significant value with respect to the Italian gross domestic product, and the individual budgets of the considered Italian regions.

Assessing the distribution and variation characteristics of marine primary productivity in the coastal marine area of Vietnam South Centre

Primary production (PP) of phytoplankton plays an essential role in food web dynamics, biogeochemical cycles and marine fisheries. It is used as one of the basic information for evaluating marine ecosystems. In this paper, monthly composite PP data on a 4 km x 4 km grid for the period 2003-2020 was used to evaluate the distributional characteristics of PP in the coastal marine area of Vietnam South Centre. The statistical results show that the climatological average of PP in 18 years reached 449.2 mgC/m2/day, ranged from 272.1 to 14,205.4 mgC/m2/day. The PP has seasonal and spatial variations. In time, the lowest value of PP was in spring, and the highest was in winter; in space, PP tended to decrease from shore to offshore, PP was higher in coastal areas than in the open sea areas. During the northeast monsoon season, PP increased by more than 1000 mgC/m2/day in the coastal area. Meanwhile, in the southwest monsoon season, due to the ecological influence of the upwelling phenomenon, PP increased with a value greater than 1500 mgC/m2/day, distributed along the coastline of Ninh Thuan - Binh Thuan. Primary productivity positively correlated with chlorophyll content but negatively correlated with sea surface temperature with correlation coefficients of 0.9 and -0.6, respectively. There was a weak correlation between PP and ONI with correlation coefficients of -0.23. The temporal-spatial variation of PP was affected by the ENSO (El Niño-Southern Oscillation) phenomenon, the positive phase of ENSO (El Niño conditions) corresponded to lower PP, and the negative phase of ENSO (La Niña conditions) corresponded to higher PP. The research results from this paper can be used as a reference in marine ecosystem management.

Registros de mamíferos presentes en el Área Marina Costera Protegida de Múltiples Usos Lafken Mapu Lahual, sur de Chile

The Lafken Mapu Lahual Coastal Marine Protected Area of Multiple Uses (Lafken Mapu Lahual), Osorno coast, southern Chile, is one of the first protected areas created in Chile during 2006, but only in 2019 its Management Plan was presented. This study provides information on its marine mammal species to be used in future biodiversity monitoring plans. The sighted mammals were recorded and counted through 18 navigation tracks and one observation point in the 2014-2015 austral breeding season. Five species were recorded systematically (one whale species, two dolphin species, one marine otter species and a one sea lion species). Two of them (Lontra felina and Balaenoptera musculus) are classified by the IUCN in the conservation category corresponding to Endangered. Laken Mapu Lahual is an important area for the species of whales that use it for their migratory route to the south of Chile.

Structure and Functionality of the Mesozooplankton Community in a Coastal Marine Environment: Portofino Marine Protected Area (Liguria)

This research is part of the LTER (Long-Term Ecological Research) project, a network of terrestrial, freshwater, transitional water and marine sites, on which ecological research is conducted on a multi-decade scale. LTER studies ecosystems, their dynamics and evolution, the relationships between biodiversity and ecological functionality, water quality, productivity, the role of resource availability, the effects of pollution and climate change. The research focuses on the study of the variability of zooplankton groups in the Portofino marine protected area, in Punta Faro. The samplings were carried out in the years 2018–2019, and the results were compared with the values of the years 2003–2005, interesting from a meteorological climatic and biological point of view. The plankton community of the Punta Faro system was analyzed by means of a modeling approach to obtain information on the functionality and health status of the system and to verify whether this has undergone any alterations in the last decade. The analyses carried out show a clear difference between the three-year period 2003–2005 and the two-year period 2018–2019, highlighting how environmental changes, such as the increase in temperature, have led to higher costs of system functioning in the last two years. The mesozooplankton community has changed both in terms of abundance of organisms and in terms of organization and functionality.

Heterogeneity of Transparent Exopolymer Particles in a Coastal Marine Environment (Sagami Bay, Japan): Seasonal Variation and Its Possible Bacterial Causes

Transparent exopolymer particles (TEPs) play important roles in the regulation of carbon and pollutant (microplastics and spilled oils) transport in marine environments; however, the factors controlling TEP dynamics in coastal systems have yet to be fully clarified. A widely used colorimetric method quantifies TEPs as a homogeneous pool, which hampers the examination of internal TEP dynamics. Here, we used the microscopy to elucidate the seasonal dynamics of TEP subgroups and their controlling factors in Sagami Bay, Japan. TEPs were classified into three types: those not associated with other types of particles (Type I), those colonized by multiple types of particles (bacteria, algal cells, and detritus) (Type II), and those densely colonized by only bacterial clusters (Type III). Type II was generally the most dominant TEP component in terms of area, except in February, when Type I contributed substantially to the total TEP area. Type III was less abundant in terms of area but contributed substantially (up to 34%) to the total number of TEPs. The mean diameters were 14.0 ± 2.8 μm, 17.0 ± 5.8 μm, and 7.5 ± 0.9 μm for Type I, Type II, and Type III TEPs, respectively. Type I and Type III TEPs likely represent a transient phase of TEP development toward the formation of Type II, characterized by a high turnover and relatively low abundance in terms of area. The power-law slopes of the distributions of each TEP size, which reflected geometric features of the TEPs at steady state, changed dynamically over the seasons. The abundance of each type of TEP was significantly positively correlated with bacterial abundance, suggesting that bacteria are intimately involved in the regulation of internal TEP dynamics in Sagami Bay. Our results highlight the importance of investigating the internal dynamics of TEPs to improve current understanding of their roles in the regulation of carbon and pollutant transfer in marine environments.