Short-term Changes in the Variance: 2. Changes in the Environmental Variance

Author(s):  
Bruce Walsh ◽  
Michael Lynch

While classical quantitative genetics usually assumes that all genotypes have the same environmental variance (the assumption of homoscedasticity), in reality, genotypes can show heteroscedasticity in the environmental variance. When such variation is heritable (i.e., has an additive variance in an outbred population), then the environmental variance can change under selection. This can either be due to an indirect response (such as during directional selection on a trait), or through direct selection to increase the homogeneity of a trait (such as for increased uniformity during harvesting). This chapter reviews the existing data on the heritability of the environmental variance and examines several different genetic models for predicting its response.

2021 ◽  
Vol 52 (1) ◽  
pp. 153-175
Author(s):  
Thomas F. Hansen ◽  
Christophe Pélabon

The concept of evolvability emerged in the early 1990s and soon became fashionable as a label for different streams of research in evolutionary biology. In evolutionary quantitative genetics, evolvability is defined as the ability of a population to respond to directional selection. This differs from other fields by treating evolvability as a property of populations rather than organisms or lineages and in being focused on quantification and short-term prediction rather than on macroevolution. While the term evolvability is new to quantitative genetics, many of the associated ideas and research questions have been with the field from its inception as biometry. Recent research on evolvability is more than a relabeling of old questions, however. New operational measures of evolvability have opened possibilities for understanding adaptation to rapid environmental change, assessing genetic constraints, and linking micro- and macroevolution.


Author(s):  
Bruce Walsh ◽  
Michael Lynch

One standard approximation in quantitative genetics is the infinitesimal model, which assumes a large number of loci, each of small effect. In such a setting, the distribution of breeding values in unselected descendants is roughly multivariate normal and most of the (short-term) change in the additive variance under selection is through Bulmer effects (the generation of linkage disequilibrium) rather than by allele-frequency change. A variety of different infinitesimal models are found in the literature, and this chapter examines these different versions and the connections between them. It also examines the theory for moving beyond the infinitesimal approximation. Finally, this chapter shows that the much-debated worry over “missing heritability” simply follows under the infinitesimal setting.


1991 ◽  
Vol 331 (1260) ◽  
pp. 213-223 ◽  

The evolution of correlated characters in natural populations depends on the demographic structure of these populations. This is often considerably more complicated than the structure of populations typically addressed by quantitative genetics, involving overlapping generations, age-dependent vital rates, and large fluctuations in recruitment from year to year. It is important to know more about such evolution because human exploitation of natural populations such as fishes is selective and has the potential to cause major changes in their properties. Here the theory of quantitative genetics of correlated characters under directional selection is extended to incorporate some demographic properties of non-equilibrium age structured populations. Short-term evolution is described in terms of changes in a matrix of mean breeding values of the traits at each age, and depends on the selection differentials in operation, together with the variances and covariances of breeding and phenotypic values. Because the selection differentials depend on the current mean phenotypic values which are themselves changing as each cohort grows older, the dynamics of mean phenotypic values within cohorts are also followed. Together, the changes in mean breeding and phenotypic values are sufficient to predict the short-term transient evolutionary dynamics of correlated characters in non-equilibrium age-structured populations. The predictions are compared with the dynamics observed in some randomly generated populations, and the application of the theory to evolution in commercially exploited populations of fish is discussed.


1995 ◽  
Vol 65 (2) ◽  
pp. 123-144 ◽  
Author(s):  
N. H. Barton

SummaryA general representation of multilocus selection is extended to allow recombination to depend on genotype. The equations simplify if modifier alleles have small effects on recombination. The evolution of such modifiers only depends on how they alter recombination between the selected loci, and does not involve dominance in modifier effects. The net selection on modifiers can be found explicitly if epistasis is weak relative to recombination. This analysis shows that recombination can be favoured in two ways: because it impedes the response to epistasis which fluctuates in sign, or because it facilitates the response to directional selection. The first mechanism is implausible, because epistasis must change sign over periods of a few generations: faster or slower fluctuations favour reduced recombination. The second mechanism requires weak negative epistasis between favourable alleles, which may either be increasing, or held in check by mutation. The selection (si) on recombination modifiers depends on the reduction in additive variance of log (fitness) due to linkage disequilibria (υ1 < 0), and on non-additive variance in log (fitness) (V′2, V′3,.. epistasis between 2, 3.. loci). For unlinked loci and pairwise epistasis, si = − (υ1 + 4V2/3)δr, where δr is the average increase in recombination caused by the modifier. The approximations are checked against exact calculations for three loci, and against Charlesworth's analyses of mutation/selection balance (1990), and directional selection (1993). The analysis demonstrates a general relation between selection on recombination and observable components of fitness variation, which is open to experimental test.


Genetics ◽  
1992 ◽  
Vol 132 (2) ◽  
pp. 603-618 ◽  
Author(s):  
A S Kondrashov ◽  
M Turelli

Abstract Apparent stabilizing selection on a quantitative trait that is not causally connected to fitness can result from the pleiotropic effects of unconditionally deleterious mutations, because as N. Barton noted, "...individuals with extreme values of the trait will tend to carry more deleterious alleles...." We use a simple model to investigate the dependence of this apparent selection on the genomic deleterious mutation rate, U; the equilibrium distribution of K, the number of deleterious mutations per genome; and the parameters describing directional selection against deleterious mutations. Unlike previous analyses, we allow for epistatic selection against deleterious alleles. For various selection functions and realistic parameter values, the distribution of K, the distribution of breeding values for a pleiotropically affected trait, and the apparent stabilizing selection function are all nearly Gaussian. The additive genetic variance for the quantitative trait is kQa2, where k is the average number of deleterious mutations per genome, Q is the proportion of deleterious mutations that affect the trait, and a2 is the variance of pleiotropic effects for individual mutations that do affect the trait. In contrast, when the trait is measured in units of its additive standard deviation, the apparent fitness function is essentially independent of Q and a2; and beta, the intensity of selection, measured as the ratio of additive genetic variance to the "variance" of the fitness curve, is very close to s = U/k, the selection coefficient against individual deleterious mutations at equilibrium. Therefore, this model predicts appreciable apparent stabilizing selection if s exceeds about 0.03, which is consistent with various data. However, the model also predicts that beta must equal Vm/VG, the ratio of new additive variance for the trait introduced each generation by mutation to the standing additive variance. Most, although not all, estimates of this ratio imply apparent stabilizing selection weaker than generally observed. A qualitative argument suggests that even when direct selection is responsible for most of the selection observed on a character, it may be essentially irrelevant to the maintenance of variation for the character by mutation-selection balance. Simple experiments can indicate the fraction of observed stabilizing selection attributable to the pleiotropic effects of deleterious mutations.


2020 ◽  
Vol 46 (2) ◽  
pp. 85-91
Author(s):  
Rafael Moreira Soares ◽  
Carlos Alberto Arrabal Arias

ABSTRACT The incidence of target spot, caused by Corynespora cassiicola, has gained increasing importance among the main soybean diseases in Brazil, and using susceptible cultivars can cause yield losses. Different susceptibility/resistance levels have been observed among cultivars in commercial crops but the genetics of the resistance to this pathogen is still unknown. To study the inheritance of soybean resistance to C. cassiicola, crosses were developed between cultivars including one cultivar resistant to target spot, BRS 316RR, one moderately resistant cultivar, BRS 184, and one susceptible cultivar BMX Potência RR. Parental generations, as well as F2 and F2:3 derived from their crosses, were evaluated as to severity and lesion size after inoculation with the pathogen. Quantitative analysis was applied to the data, and genetic models were adjusted for means and variances. Predominance of additive genetic effects controlling soybean resistance to C. cassiicola is suggested for the different crosses. The genetic models adjusted for the means detected an additive genetic effect more frequently. The additive variance D was detected only for the trait lesion size and had low heritability, indicating high environmental effect influencing the reaction. Based on mean and variance genetic models, further genetic gains are expected in the cross BRS 316RR x BMX Potência RR. The effect of genetic dominance was not important. The presence of significant epistasis in crosses between susceptible cultivars indicates the existence of at least two genes affecting resistance and that are interacting. The normal continuous distribution of the frequency of the number of individuals in different classes of resistance indicates that the resistance to C. cassiicola is quantitatively inherited and there is predominance of an additive genetic effect and low heritability.


2010 ◽  
Vol 278 (1713) ◽  
pp. 1903-1912 ◽  
Author(s):  
Mihaela Pavlicev ◽  
James M. Cheverud ◽  
Günter P. Wagner

A basic assumption of the Darwinian theory of evolution is that heritable variation arises randomly. In this context, randomness means that mutations arise irrespective of the current adaptive needs imposed by the environment. It is broadly accepted, however, that phenotypic variation is not uniformly distributed among phenotypic traits, some traits tend to covary, while others vary independently, and again others barely vary at all. Furthermore, it is well established that patterns of trait variation differ among species. Specifically, traits that serve different functions tend to be less correlated, as for instance forelimbs and hind limbs in bats and humans, compared with the limbs of quadrupedal mammals. Recently, a novel class of genetic elements has been identified in mouse gene-mapping studies that modify correlations among quantitative traits. These loci are called relationship loci, or relationship Quantitative Trait Loci (rQTL), and affect trait correlations by changing the expression of the existing genetic variation through gene interaction. Here, we present a population genetic model of how natural selection acts on rQTL. Contrary to the usual neo-Darwinian theory, in this model, new heritable phenotypic variation is produced along the selected dimension in response to directional selection. The results predict that selection on rQTL leads to higher correlations among traits that are simultaneously under directional selection. On the other hand, traits that are not simultaneously under directional selection are predicted to evolve lower correlations. These results and the previously demonstrated existence of rQTL variation, show a mechanism by which natural selection can directly enhance the evolvability of complex organisms along lines of adaptive change.


2020 ◽  
Author(s):  
Reginald D. Smith

AbstractThe correlations between relatives is one of the fundamental ideas and earliest success of quantitative genetics. Whether using genomic data to infer relationships between individuals or estimating heritability from correlations of phenotypes amongst relatives, understanding the theoretical genetic correlations is a common task. Calculating the correlations between arbitrary relatives in an outbred population, however, can be a careful and somewhat complex task for increasingly distant relatives. This paper introduces an equation based method that consolidates the results of path analysis and uses easily obtainable data from non-inbred pedigrees to allow the rapid calculation of additive or dominance correlations between relatives even in more complicated situations such as cousins sharing more than two grandparents and inbreeding.


2021 ◽  
Author(s):  
Joel L Pick ◽  
Hannah Lemon ◽  
Caroline Elizabeth Thomson ◽  
Jarrod Hadfield

The major frameworks for predicting evolutionary change assume that a phenotype's underlying genetic and environmental components are normally distributed. However, the predictions of these frameworks may no longer hold if distributions are skewed. Despite this, phenotypic skew has never been decomposed, meaning the fundamental assumptions of quantitative genetics remain untested. Here, we demonstrate that the substantial phenotypic skew in the body size of juvenile blue tits (Cyanistes caeruleus) is driven by environmental factors. Although skew had little impact on our predictions of selection response in this case, our results highlight the impact of skew on the estimation of inheritance and selection. Specifically, the non-linear parent-offspring regressions induced by skew, alongside selective disappearance, can strongly bias estimates of heritability. The ubiquity of skew and strong directional selection on juvenile body size implies that heritability is commonly overestimated, which may in part explain the discrepancy between predicted and observed trait evolution.


2012 ◽  
Vol 26 (S1) ◽  
Author(s):  
Vincent Careau ◽  
Matthew Wolak ◽  
Patrick A Carter ◽  
THEODORE GARLAND

Sign in / Sign up

Export Citation Format

Share Document