Genetic and cytogenetic analyses of the A genome of Triticum monococcum. II. The mode of inheritance of spring versus winter growth habit

1986 ◽  
Vol 28 (1) ◽  
pp. 88-95 ◽  
Author(s):  
J. Kuspira ◽  
J. Maclagan ◽  
K. Kerby ◽  
R. N. Bhambhani

The study on the mode of inheritance of spring versus winter growth habit in Triticum monococcum is the first in a diploid wheat species. The results are discussed in light of the information available on the genetics and cytogenetics of this character in Triticum aestivum. Two spring habit and six winter habit lines were used in these investigations. Statistical analyses of progenies in each of these lines clearly established the true-breeding nature of all eight lines with respect to days to heading. Analysis of F1 and F2 results of crosses between the two spring habit lines 68 and 293 showed the following: (i) neither line carries winter habit alleles at any of the major gene loci determining growth habit; and (ii) four of five minor allele pairs determine the phenotypic differences between them. Monohybrid F2 and testcross ratios in crosses between spring habit line 68 and each of the six winter lines lead to the following conclusions: (i) differences between spring and winter growth habit in each cross are due to alleles of one major gene; (ii) the allele for spring habit is completely dominant to that for winter habit in each cross; and (iii) all these lines are genotypically identical or very similar at all modifying gene loci. These results imply that only one major gene determines growth habit in this species. Diallel (critical) crosses among the six recessive lines indicate that complementation does not occur in any of the F1's. Therefore, all these recessive genes represent mutations in the same gene. If these results are characteristic of all winter lines in Triticum monococcum, they permit the initial conclusion that only one major gene determines growth habit in this diploid species. This locus is in all likelihood the VrnI locus since it is the only one of the five major genes identified for growth habit, that is present in the A genome of Triticum aestivum. All six recessive lines respond to natural vernalization. This lends further support to our initial conclusion. Because the six recessive lines head at five different times we conclude that a multiple allelic series occurs at this locus. Specifically, at least three and probably five recessive alleles responsible for different heading dates among the winter lines, and at least one dominant allele for spring habit, occur at this locus.Key words: Triticum, complementation, quantitative, vernalization, alleles, multiple.

Genome ◽  
1989 ◽  
Vol 32 (5) ◽  
pp. 869-881 ◽  
Author(s):  
J. Kuspira ◽  
J. Maclagan ◽  
R. N. Bhambhani ◽  
R. S. Sadasivaiah ◽  
N.-S. Kim

Our investigation of 460 true-breeding lines confirms a long-standing observation that natural phenotypic and genetic variability in the diploid wheat Triticum monococcum L. is limited. The modes of inheritance of 12 morphological characters are discussed in light of the extensive information available on the genetics and cytogenetics of many of these characters in the related wheat Triticum aestivum. Analysis of data from appropriate crosses, complementation studies, and observations of phenotypes of F1s and F2s from crosses between lines expressing dominant traits indicate that each of these characters is determined by one major gene. A multiple allelic series exists at each of the Hg (glume pubescence) and Hn (node pubescence) loci. The genes for six of these characters fall into two closely linked groups. Genes Bg (glume colour) and Hg are the same distance apart as in Triticum aestivum, indicating that at least this segment of chromosome 1A has been highly or completely conserved since the origin of the polyploid wheats. The genes Sg (glume hardness), La (lemma awn length), Fg (false glume), and Lh (head type) are also very closely linked, with the outside markers being only 4 map units apart. The dominant and recessive alleles of genes determining these characters should serve as excellent markers for linkage and chromosomal mapping because of their complete penetrance and constant expressivity. Tentative assignments of genes and linkage groups identified in this investigation to specific chromosomes of T. monococcum have been made on the basis of known chromosomal locations of A genome genes in T. aestivum. The tentative assignments could be verified using a variety of genetic and cytogenetic approaches. It is suggested that a thorough study of the genetic heritage of einkorn wheat will require the use of induced mutants since natural genetic variability is low in this species.Key words: Triticum, characters, inheritance, linkage, mapping, A genome.


Genome ◽  
1987 ◽  
Vol 29 (5) ◽  
pp. 722-737 ◽  
Author(s):  
K. Kerby ◽  
J. Kuspira

The phylogeny of the polyploid wheats has been the subject of intense research and speculation during the past 70 years. Various experimental approaches have been employed to ascertain the diploid progenitors of these wheats. The species having donated the D genome to Triticum aestivum has been unequivocally identified as Aegilops squarrosa. On the basis of evidence from many studies, Triticum monococcum has been implicated as the source of the A genome in both Triticum turgidum and Triticum aestivum. However, numerous studies since 1968 have shown that Triticum urartu is very closely related to Triticum monococcum and that it also carries the A genome. These studies have prompted the speculation that Triticum urartu may be the donor of this chromosome set to the polyploid wheats. The donor of the B genome to Triticum turgidum and Triticum aestivum remains equivocal and controversial. Six different diploid species have been implicated as putative B genome donors: Aegilops bicornis, Aegilops longissima, Aegilops searsii, Aegilops sharonensis, Aegilops speltoides, and Triticum urartu. Until recently, evidence presented by different researchers had not permitted an unequivocal identification of the progenitor of the B genome in polyploid wheats. Recent studies, involving all diploid and polyploid wheats and putative B genome donors, lead to the conclusion that Aegilops speltoides and Triticum urartu can be excluded as B genome donors and that Aegilops searsii is the most likely source of this chromosome set. The possibility of the B genome having arisen from an AAAA autotetraploid or having a polyphyletic origin is discussed. Key words: phylogeny; Triticum aestivum; Triticum turgidum; A, B, and D genomes.


2021 ◽  
Author(s):  
Hammouda Bousbia Dounia ◽  
Benbelkacem Abdelkader

The distribution and Caracterization of constitutive heterochromatin in A-Am genomes of diploid wheat (progenitor), polyploid wheat (hybrids) and triticales (primary and secondary) are analyzed and compared by C-bands. The Comparison of zones rich in highly repeated DNA sequences marked by C bands on the all chromosomes of Am - A genomes revealed an important structural heterogeneity. Four chromosomes of Triticum monococcum (1Am-3Am-4Am-5Am) are almost similar to their homologues in wheat (Triticum durum , Triticum aestivum ) and triticale, by the presence or absence of C bands. Contrary to the chromosomes 2Am (rich in heterochromatin), 6Am-7Am (absence of C bands) show a great differentiation compared to their homologues of Triticum durum and Triticum aestivum and x-Triticosecale Wittmack. In the triticales, A genome chromosomes are richer in heterochromatin compared to theirs homologous of polyploid wheats. This is explained by a "genome shock The confrontation of C- bands genome (Triticum monococcum) with a C+ bands genome (durum wheat / or common wheat) produces an interspecific hybrid which at the sixth generation reveals C+ bands (triticales). The variations observed in our vegetal material indicated the existence of an intervarietal and interspecific heterochromatic polymorphism. The presence of B chromosomes in triticales, could be explained as a manifestation of their adaptation.


1986 ◽  
Vol 28 (5) ◽  
pp. 867-887 ◽  
Author(s):  
J. Kuspira ◽  
R. N. Bhambhani ◽  
R. S. Sadasivaiah ◽  
D. Hayden

Mature triploid seed from reciprocal (2n = 4x × 2n = 2x) crosses in Triticum monococcum was minute and shrivelled because of endosperm collapse and therefore failed to germinate. This necessitated the excision of embryos from successful pollinations and their growth in vitro to ensure subsequent germination so as to obtain viable and vigorous autotriploids. A comparison of these triploids with their diploid and tetraploid progenitors revealed that cell size, kernel weight, and pistil size increased with an increase in ploidy level. However, unlike other species, optimum expression was observed in these triploids for plant height, tillering, size of spikes, number of spikelets/spike, and leaf size. Earliness, althoughenhanced in tetraploids relative to diploids, was delayed in the triploids. Mean numbers of univalents, bivalents, and trivalents per microsporocyte were 2.65, 2.60, and 4.38, respectively. Only chains (93.5%), which formed V-shaped metaphase I (MI) configurations, frying pan (5.0%), and Y-shaped (1.5%) trivalent associations occurred. On the average, two reciprocal exchanges occurred per bivalent and trivalent. Trivalents corriented randomly at MI. At anaphase I, all sets of three homologues segreated randomly to the two poles, lagging univalents always divided equationally, and only meiocytes with such chromosomes formed micronuclei. The reasons for similarities and differences in meiotic behaviour of T. monococcum triploids with those of other species are discussed. Confirmation of the conclusions drawn with respect to the cytology of the triploids was obtained from similar cytological observations with primary single trisomics. These triploids produced euploids, primary single trisomics as well as some double and triple trisomics all of which differed phenotypically from diploids. Triticum monococcum, like most diploid species, is highly intolerant of aneuploidy. Possible reasons for the differences in levels of tolerance of aneuploidy in species like T. monococcum and those like Petunia hybrida, which are highly tolerant of aneuploidy, are discussed. Pollen fertility was high and seed fertility was very low. Reasons for the latter as well as the high fertility in species that are highly tolerant of aneuploidy and allotriploids are discussed.Key words: Triticum monococcum, autotriploid, trisomic, cytology, breeding behavior, fertility, morphology.


1984 ◽  
Vol 26 (3) ◽  
pp. 279-287 ◽  
Author(s):  
K. C. Chen ◽  
J. Dvořák

Triticum speltoides (Tausch) Gren. ex Richter plants which differed in the ability to promote heterogenetic chromosome pairing in hybrids T. aestivum L. × T. speltoides were crossed and a single F1 plant from each cross was hybridized with T. aestivum. The segregation among the hybrids for mean number of chiasmata per cell showed that two gene systems in T. speltoides genotypes were involved in the promotion of heterogenetic pairing. One system was composed of two duplicate gene loci segregating independently of each other. Variation at these loci determined two basic levels of heterogenetic pairing. The other system was composed of several minor genes extensively modifying the effects of the major genes. The minor genes interacted mostly in an additive fashion. Triticum speltoides inbred plants were then crossed with diploid species. T. tauschii (Coss.) Schmal and T. dichasians (Zhuk.) Bowden. Consistent differences in the levels of chromosome pairing were found in these hybrids. However, this variation in chromosome pairing did not coincide with the variation at the major gene loci. This indicated that the major genes were ineffective in the diploid hybrids.Key words: Triticum, pairing regulation, homeologous pairing, heterogenetic pairing.


Genome ◽  
1999 ◽  
Vol 42 (4) ◽  
pp. 706-713 ◽  
Author(s):  
Concha Linares ◽  
Antonio Serna ◽  
Araceli Fominaya

A repetitive sequence, pAs17, was isolated from Avena strigosa (As genome) and characterized. The insert was 646 bp in length and showed 54% AT content. Databank searches revealed its high homology to the long terminal repeat (LTR) sequences of the specific family of Ty1-copia retrotransposons represented by WIS2-1A and Bare. It was also found to be 70% identical to the LTR domain of the WIS2-1A retroelement of wheat and 67% identical to the Bare-1 retroelement of barley. Southern hybridizations of pAs17 to diploid (A or C genomes), tetraploid (AC genomes), and hexaploid (ACD genomes) oat species revealed that it was absent in the C diploid species. Slot-blot analysis suggested that both diploid and tetraploid oat species contained 1.3 × 104 copies, indicating that they are a component of the A-genome chromosomes. The hexaploid species contained 2.4 × 104 copies, indicating that they are a component of both A- and D-genome chromosomes. This was confirmed by fluorescent in situ hybridization analyses using pAs17, two ribosomal sequences, and a C-genome specific sequence as probes. Further, the chromosomes involved in three C-A and three C-D intergenomic translocations in Avena murphyi (AC genomes) and Avena sativa cv. Extra Klock (ACD genomes), respectively, were identified. Based on its physical distribution and Southern hybridization patterns, a parental retrotransposon represented by pAs17 appears to have been active at least once during the evolution of the A genome in species of the Avena genus.Key words: chromosomal organization, in situ hybridization, intergenomic translocations, LTR sequence, oats.


2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Liuyang Fu ◽  
Qian Wang ◽  
Lina Li ◽  
Tao Lang ◽  
Junjia Guo ◽  
...  

Abstract Background Chromosomal variants play important roles in crop breeding and genetic research. The development of single-stranded oligonucleotide (oligo) probes simplifies the process of fluorescence in situ hybridization (FISH) and facilitates chromosomal identification in many species. Genome sequencing provides rich resources for the development of oligo probes. However, little progress has been made in peanut due to the lack of efficient chromosomal markers. Until now, the identification of chromosomal variants in peanut has remained a challenge. Results A total of 114 new oligo probes were developed based on the genome-wide tandem repeats (TRs) identified from the reference sequences of the peanut variety Tifrunner (AABB, 2n = 4x = 40) and the diploid species Arachis ipaensis (BB, 2n = 2x = 20). These oligo probes were classified into 28 types based on their positions and overlapping signals in chromosomes. For each type, a representative oligo was selected and modified with green fluorescein 6-carboxyfluorescein (FAM) or red fluorescein 6-carboxytetramethylrhodamine (TAMRA). Two cocktails, Multiplex #3 and Multiplex #4, were developed by pooling the fluorophore conjugated probes. Multiplex #3 included FAM-modified oligo TIF-439, oligo TIF-185-1, oligo TIF-134-3 and oligo TIF-165. Multiplex #4 included TAMRA-modified oligo Ipa-1162, oligo Ipa-1137, oligo DP-1 and oligo DP-5. Each cocktail enabled the establishment of a genome map-based karyotype after sequential FISH/genomic in situ hybridization (GISH) and in silico mapping. Furthermore, we identified 14 chromosomal variants of the peanut induced by radiation exposure. A total of 28 representative probes were further chromosomally mapped onto the new karyotype. Among the probes, eight were mapped in the secondary constrictions, intercalary and terminal regions; four were B genome-specific; one was chromosome-specific; and the remaining 15 were extensively mapped in the pericentric regions of the chromosomes. Conclusions The development of new oligo probes provides an effective set of tools which can be used to distinguish the various chromosomes of the peanut. Physical mapping by FISH reveals the genomic organization of repetitive oligos in peanut chromosomes. A genome map-based karyotype was established and used for the identification of chromosome variations in peanut following comparisons with their reference sequence positions.


Author(s):  
Shisheng Chen ◽  
Joshua Hegarty ◽  
Tao Shen ◽  
Lei Hua ◽  
Hongna Li ◽  
...  

AbstractKey messageThe stripe rust resistance geneYr34 was transferred to polyploid wheat chromosome 5AL from T. monococcumand has been used for over two centuries.Wheat stripe (or yellow) rust, caused by Puccinia striiformis f. sp. tritici (Pst), is currently among the most damaging fungal diseases of wheat worldwide. In this study, we report that the stripe rust resistance gene Yr34 (synonym Yr48) is located within a distal segment of the cultivated Triticum monococcum subsp. monococcum chromosome 5AmL translocated to chromosome 5AL in polyploid wheat. The diploid wheat species Triticum monococcum (genome AmAm) is closely related to T. urartu (donor of the A genome to polyploid wheat) and has good levels of resistance against the stripe rust pathogen. When present in hexaploid wheat, the T. monococcum Yr34 resistance gene confers a moderate level of resistance against virulent Pst races present in California and the virulent Chinese race CYR34. In a survey of 1,442 common wheat genotypes, we identified 5AmL translocations of fourteen different lengths in 17.5% of the accessions, with higher frequencies in Europe than in other continents. The old European wheat variety “Mediterranean” was identified as a putative source of this translocation, suggesting that Yr34 has been used for over 200 years. Finally, we designed diagnostic CAPS and sequenced-based markers that will be useful to accelerate the deployment of Yr34 in wheat breeding programs to improve resistance to this devastating pathogen.


Genome ◽  
2010 ◽  
Vol 53 (11) ◽  
pp. 948-956 ◽  
Author(s):  
G. Durstewitz ◽  
A. Polley ◽  
J. Plieske ◽  
H. Luerssen ◽  
E. M. Graner ◽  
...  

Oilseed rape ( Brassica napus ) is an allotetraploid species consisting of two genomes, derived from B. rapa (A genome) and B. oleracea (C genome). The presence of these two genomes makes single nucleotide polymorphism (SNP) marker identification and SNP analysis more challenging than in diploid species, as for a given locus usually two versions of a DNA sequence (based on the two ancestral genomes) have to be analyzed simultaneously during SNP identification and analysis. One hundred amplicons derived from expressed sequence tag (ESTs) were analyzed to identify SNPs in a panel of oilseed rape varieties and within two sister species representing the ancestral genomes. A total of 604 SNPs were identified, averaging one SNP in every 42 bp. It was possible to clearly discriminate SNPs that are polymorphic between different plant varieties from SNPs differentiating the two ancestral genomes. To validate the identified SNPs for their use in genetic analysis, we have developed Illumina GoldenGate assays for some of the identified SNPs. Through the analysis of a number of oilseed rape varieties and mapping populations with GoldenGate assays, we were able to identify a number of different segregation patterns in allotetraploid oilseed rape. The majority of the identified SNP markers can be readily used for genetic mapping, showing that amplicon sequencing and Illumina GoldenGate assays can be used to reliably identify SNP markers in tetraploid oilseed rape and to convert them into successful SNP assays that can be used for genetic analysis.


2002 ◽  
Vol 93 (3) ◽  
pp. 1000-1006 ◽  
Author(s):  
Mary F. Feitosa ◽  
Steven E. Gaskill ◽  
Treva Rice ◽  
Tuomo Rankinen ◽  
Claude Bouchard ◽  
...  

This study investigates whether there are major gene effects on oxygen uptake at the ventilatory threshold (V˙o 2 VT) and theV˙o 2 VT maximal oxygen uptake (VT%V˙o 2 max), at baseline and in response to 20 wk of exercise training by using data on 336 whites and 160 blacks. Segregation analysis was performed on the residuals ofV˙o 2 VT and VT%V˙o 2 max. In whites, there was strong evidence of a major gene, with 3 and 2% of the sample in the upper distribution, that accounted for 52 and 43% of the variance in baseline V˙o 2 VT and VT%V˙o 2 max, respectively. There were no genotype-specific covariate effects (sex, age, weight, fat mass, and fat-free mass). The segregation results were inconclusive for the training response in whites, and for the baseline and training response in blacks, probably due to insufficient power because of reduced sample sizes or smaller gene effect or both. The strength of the genetic evidence for V˙o 2 VT and VT%V˙o 2 max suggests that these traits should be further investigated for potential relations with specific candidate genes, if they can be identified, and explored through a genome-wide scan.


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