scholarly journals Implications of salinity normalization of seawater total alkalinity in coral reef metabolism studies

PLoS ONE ◽  
2021 ◽  
Vol 16 (12) ◽  
pp. e0261210
Author(s):  
Travis A. Courtney ◽  
Tyler Cyronak ◽  
Alyssa J. Griffin ◽  
Andreas J. Andersson
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Surface Runoff ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Mixing Processes ◽  
Carbonate Production ◽  
Freshwater Inputs ◽  
Global Datasets

Salinity normalization of total alkalinity (TA) and dissolved inorganic carbon (DIC) data is commonly used to account for conservative mixing processes when inferring net metabolic modification of seawater by coral reefs. Salinity (S), TA, and DIC can be accurately and precisely measured, but salinity normalization of TA (nTA) and DIC (nDIC) can generate considerable and unrecognized uncertainties in coral reef metabolic rate estimates. While salinity normalization errors apply to nTA, nDIC, and other ions of interest in coral reefs, here, we focus on nTA due to its application as a proxy for net coral reef calcification and the importance for reefs to maintain calcium carbonate production under environmental change. We used global datasets of coral reef TA, S, and modeled groundwater discharge to assess the effect of different volumetric ratios of multiple freshwater TA inputs (i.e., groundwater, river, surface runoff, and precipitation) on nTA. Coral reef freshwater endmember TA ranged from -2 up to 3032 μmol/kg in hypothetical reef locations with freshwater inputs dominated by riverine, surface runoff, or precipitation mixing with groundwater. The upper bound of freshwater TA in these scenarios can result in an uncertainty in reef TA of up to 90 μmol/kg per unit S normalization if the freshwater endmember is erroneously assumed to have 0 μmol/kg alkalinity. The uncertainty associated with S normalization can, under some circumstances, even shift the interpretation of whether reefs are net calcifying to net dissolving, or vice versa. Moreover, the choice of reference salinity for normalization implicitly makes assumptions about whether biogeochemical processes occur before or after mixing between different water masses, which can add uncertainties of ±1.4% nTA per unit S normalization. Additional considerations in identifying potential freshwater sources of TA and their relative volumetric impact on seawater are required to reduce uncertainties associated with S normalization of coral reef carbonate chemistry data in some environments. However, at a minimum, researchers should minimize the range of salinities over which the normalization is applied, precisely measure salinity, and normalize TA values to a carefully selected reference salinity that takes local factors into account.

scholarly journals Inorganic carbon cycling and biogeochemical processes in an Arctic inland sea (Hudson Bay)

2016 ◽  
Vol 13 (16) ◽  
pp. 4659-4671 ◽  
Author(s):  
William J. Burt ◽  
Helmuth Thomas ◽  
Lisa A. Miller ◽  
Mats A. Granskog ◽  
Tim N. Papakyriakou ◽  
...  
Keyword(s):  
Carbon Cycling ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Hudson Bay ◽  
Near Surface ◽  
Annual Cycles ◽  
Detailed Assessment ◽  
Freshwater Inputs ◽  
End Members

Abstract. The distributions of carbonate system parameters in Hudson Bay, which not only receives nearly one-third of Canada's river discharge but is also subject to annual cycles of sea-ice formation and melt, indicate that the timing and magnitude of freshwater inputs play an important role in carbon biogeochemistry and acidification in this unique Arctic ecosystem. This study uses basin-wide measurements of dissolved inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope tracers (δ18O and δ13CDIC), to provide a detailed assessment of carbon cycling processes within the bay. Surface distributions of carbonate parameters reveal the particular importance of freshwater inputs in the southern portion of the bay. Based on TA, we surmise that the deep waters in the Hudson Bay are largely of Pacific origin. Riverine TA end-members vary significantly both regionally and with small changes in near-surface depths, highlighting the importance of careful surface water sampling in highly stratified waters. In an along-shore transect, large increases in subsurface DIC are accompanied by equivalent decreases in δ13CDIC with no discernable change in TA, indicating a respiratory DIC production on the order of 100 µmol kg−1 DIC during deep water circulation around the bay.

scholarly journals Inorganic Carbon Cycling and Biogeochemical Processes in an Arctic Inland Sea (Hudson Bay)

2016 ◽  
Author(s):  
William J. Burt ◽  
Helmuth Thomas ◽  
Lisa A. Miller ◽  
Mats A. Granskog ◽  
Tim N. Papakyriakou ◽  
...  
Keyword(s):  
Carbon Cycling ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Hudson Bay ◽  
Near Surface ◽  
Annual Cycles ◽  
Detailed Assessment ◽  
Freshwater Inputs ◽  
End Members

Abstract. The distributions of carbonate system parameters in Hudson Bay, which not only receives nearly one third of Canada's river discharge, but which is also subject to annual cycles of sea-ice formation and melt, indicate that the timing and magnitude of freshwater inputs play an important role in carbon biogeochemistry and acidification in this unique Arctic ecosystem. This study uses basin-wide measurements of dissolved inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope tracers (δ18O and δ13CDIC), to provide a detailed assessment of carbon cycling processes within the bay. Surface distributions of carbonate parameters reveal the particular importance of freshwater inputs in the southern portion of the bay. Based on TA, we surmise that the deep waters in the Hudson Bay are largely of Pacific origin. Riverine TA end-members vary significantly both regionally and with small changes in near-surface depths, highlighting the importance of careful surface water sampling in highly stratified waters. In an along-shore transect, large increases in subsurface DIC are accompanied by equivalent decreases in δ13CDIC with no discernable change in TA, indicating a respiratory DIC production on the order of 100 μmol kg−1 during deep water circulation around the bay.

scholarly journals Inorganic carbon fluxes on the Mackenzie Shelf of the Beaufort Sea

2017 ◽  
Author(s):  
Jacoba Mol ◽  
Helmuth Thomas ◽  
Paul G. Myers ◽  
Xianmin Hu ◽  
Alfonso Mucci
Keyword(s):  
Sea Ice ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Beaufort Sea ◽  
Total Alkalinity ◽  
The Arctic ◽  
Surface Mixed Layer ◽  
Saturation State ◽  
Carbon Transfer ◽  
Mackenzie Shelf

Abstract. The Mackenzie Shelf in the southeastern Beaufort Sea is a region that has experienced large changes in the past several decades as warming, sea-ice loss, and increased river discharge have altered carbon cycling. Upwelling and downwelling events are common on the shelf, caused by strong, fluctuating along-shore winds, resulting in cross-shelf Ekman transport, and an alternating estuarine and anti-estuarine circulation. Downwelling carries inorganic carbon and other remineralization products off the shelf and into the deep basin for possible long-term storage in the world oceans. Upwelling carries dissolved inorganic carbon (DIC) and nutrient-rich waters from the Pacific-origin upper halocline layer (UHL) onto the shelf. Profiles of DIC and total alkalinity (TA) taken in August and September of 2014 are used to investigate the cycling of inorganic carbon on the Mackenzie Shelf. The along-shore transport of water and the cross-shelf transport of inorganic carbon are quantified using velocity field output from a simulation of the Arctic and Northern Hemisphere Atlantic (ANHA4) configuration of the Nucleus of European Modelling of the Ocean (NEMO) framework. A strong upwelling event prior to sampling on the Mackenzie Shelf is analyzed and the resulting influence on the carbonate system, including the saturation state of waters with respect to aragonite and pH, is investigated. TA and the oxygen isotope ratio of water (δ18O) are used to examine water-mass distributions in the study area and to investigate the influence of Pacific Water, Mackenzie River freshwater, and sea-ice melt on carbon dynamics and air-sea fluxes of carbon dioxide (CO2) in the surface mixed layer. Understanding carbon transfer in this seasonally dynamic environment is key to quantify the importance of Arctic shelf regions to the global carbon cycle and provide a basis for understanding how it will respond to the aforementioned climate-induced changes.

Small-Scale Gradients in Big River: Implications for a State-of-the-Art Research Platform in the Elbe

2021 ◽  
Author(s):  
Sina Bold ◽  
Justus E.E. van Beusekom ◽  
Yoana G. Voynova ◽  
Marius Cysewski ◽  
Bryce Van Dam ◽  
...  
Keyword(s):  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Ammonium Phosphate ◽  
Total Alkalinity ◽  
Small Scale ◽  
Suspended Particulate ◽  
Research Platform ◽  
Biogeochemical Parameters ◽  
Art Research ◽  
Set Up

<p>Estuaries are crucial in transforming matter fluxes from land to sea. To better understand and quantify these processes and respective fluxes, it is important to determine the input into an estuary accurately. To allow for such studies in the Elbe estuary in Germany, a state-of-the-art research platform is currently being set-up just upstream of the weir in Geesthacht at the entrance of the estuary. Here, we report on small-scale spatial dynamics of organic matter and associated processes from several cross and longitudinal profiles around the planned location and the implications for the set-up of the aforementioned research platform.</p><p>Based on preliminary data obtained in August 2020 during a period of relatively low discharge, we present the following results: (1) In three cross profiles along a 10 km transect of the Elbe upstream of the weir, we observed considerable small-scale gradients regarding currents and various biogeochemical parameters. In comparison to the fairway, water from the riverbanks was depleted in suspended particulate matter, chlorophyll a, dissolved oxygen, and nitrate, and enhanced in ammonium, phosphate and silicate, as well as total alkalinity and dissolved inorganic carbon paralleled by decreasing pH. This suggests that in the summer, organic matter is deposited and remineralised at the riverbanks, resulting in the release of ammonium, phosphate and silicate, and in the removal of nitrate, presumably by denitrification. (2) Along the 10 km transect towards the weir, we observed that concentrations of suspended particulate matter, chlorophyll a, dissolved oxygen, nitrate and pH were decreasing. In contrast, we found that ammonium, phosphate and silicate, total alkalinity and dissolved inorganic carbon increased towards the weir. This suggests an increased sedimentation and subsequent remineralisation due to the reduced flow velocities in front of the weir. (3) An analysis of a 10-year time series from the weir supports this by showing higher ammonium concentrations when discharges were relatively low. The implications of these findings for the set-up of the research platform in this area, as well as for optimising estimates of budgets are discussed. The research platform will contribute to understand further such variations in biogeochemical parameters at the entrance of the Elbe estuary over time.</p><p>The research platform is set-up in cooperation with the Helmholtz initiative MOSES (“Modular Observation Solutions for Earth Systems“) and will be incorporated in the Elbe-North Sea Supersite of DANUBIUS-RI (“International Centre for Advanced Studies on River-Sea Systems“). Funding is provided by European Regional Development Funds, the federal state of Schleswig-Holstein, the Helmholtz Association and the Helmholtz-Zentrum Geesthacht. The research platform, planned to be operational in autumn 2021, will also be open for users e.g. to develop and test new methods and technologies. Data will be made available through the “Helmholtz Coastal Data Centre” (HCDC).</p>

scholarly journals Divergence of seafloor elevation and sea level rise in coral reef ecosystems

2017 ◽  
Vol 14 (6) ◽  
pp. 1739-1772 ◽  
Author(s):  
Kimberly K. Yates ◽  
David G. Zawada ◽  
Nathan A. Smiley ◽  
Ginger Tiling-Range
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Sea Level Rise ◽  
Sea Level ◽  
Anthropogenic Impacts ◽  
Regional Scale ◽  
Coastal Hazards ◽  
Carbonate Production ◽  
Coral Reef Ecosystems ◽  
Study Sites

Abstract. Coral reefs serve as natural barriers that protect adjacent shorelines from coastal hazards such as storms, waves, and erosion. Projections indicate global degradation of coral reefs due to anthropogenic impacts and climate change will cause a transition to net erosion by mid-century. Here, we provide a comprehensive assessment of the combined effect of all of the processes affecting seafloor accretion and erosion by measuring changes in seafloor elevation and volume for five coral reef ecosystems in the Atlantic, Pacific, and Caribbean over the last several decades. Regional-scale mean elevation and volume losses were observed at all five study sites and in 77 % of the 60 individual habitats that we examined across all study sites. Mean seafloor elevation losses for whole coral reef ecosystems in our study ranged from −0.09 to −0.8 m, corresponding to net volume losses ranging from 3.4  ×  106 to 80.5  ×  106 m3 for all study sites. Erosion of both coral-dominated substrate and non-coral substrate suggests that the current rate of carbonate production is no longer sufficient to support net accretion of coral reefs or adjacent habitats. We show that regional-scale loss of seafloor elevation and volume has accelerated the rate of relative sea level rise in these regions. Current water depths have increased to levels not predicted until near the year 2100, placing these ecosystems and nearby communities at elevated and accelerating risk to coastal hazards. Our results set a new baseline for projecting future impacts to coastal communities resulting from degradation of coral reef systems and associated losses of natural and socioeconomic resources.

NZOA-ON: the New Zealand Ocean Acidification Observing Network

2020 ◽  
Vol 71 (3) ◽  
pp. 281 ◽  
Author(s):  
J. M. Vance ◽  
K. I. Currie ◽  
C. S. Law ◽  
J. Murdoch ◽  
J. Zeldis
Keyword(s):  
New Zealand ◽  
Ocean Acidification ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Grass Roots ◽  
The Past ◽  
Field Samples ◽  
The University ◽  
Global Initiatives

A national observing network has been operating over the past 4 years to inform the scientific and economic challenges of ocean acidification (OA) facing New Zealand. The New Zealand Ocean Acidification Observing Network (NZOA-ON) consists of 12 sites across varied coastal ecosystems. These ecosystems range from oligotrophic ocean-dominated systems to eutrophic river-dominated systems, with sites that are pristine or affected by agriculture and urbanisation. Fortnightly measurements of total alkalinity and dissolved inorganic carbon provide the baseline of carbonate chemistry in these varied ecosystems and will facilitate detection of future changes, as well as providing a present-day baseline. The National Institute of Water and Atmospheric Research and the University of Otago have developed a ‘grass-roots’ sampling program, providing training and equipment that enable sampling partners to collect field samples for analyses at a central laboratory. NZOA-ON leverages existing infrastructure and partnerships to maximise data captured for understanding the drivers of chemical changes associated with OA and ecological responses. NZOA-ON coordinates with and contributes to global initiatives to understand and mitigate the broader impacts of OA. A description of NZOA-ON is presented with preliminary analyses and comparison of data from different sites after the first 4 years of the network.

scholarly journals Seasonal variability of the inorganic carbon system in a large coastal plain estuary

2017 ◽  
Vol 14 (21) ◽  
pp. 4949-4963 ◽  
Author(s):  
Andrew Joesoef ◽  
David L. Kirchman ◽  
Christopher K. Sommerfield ◽  
Wei-Jun Cai
Keyword(s):  
Inorganic Carbon ◽  
Drainage Basin ◽  
Dissolved Inorganic Carbon ◽  
Coastal Ocean ◽  
Total Alkalinity ◽  
Delaware Estuary ◽  
Terrestrial Organic Matter ◽  
Delaware River ◽  
Export Flux ◽  
Carbon System

Abstract. Carbonate geochemistry research in large estuarine systems is limited. More work is needed to understand how changes in land-use activity influence watershed export of organic and inorganic carbon, acids, and nutrients to the coastal ocean. To investigate the seasonal variation of the inorganic carbon system in the Delaware Estuary, one of the largest estuaries along the US east coast, dissolved inorganic carbon (DIC), total alkalinity (TA), and pH were measured along the estuary from June 2013 to April 2015. In addition, DIC, TA, and pH were periodically measured from March to October 2015 in the nontidal freshwater Delaware, Schuylkill, and Christina rivers over a range of discharge conditions. There were strong negative relationships between river TA and discharge, suggesting that changes in HCO3− concentrations reflect dilution of weathering products in the drainage basin. The ratio of DIC to TA, an understudied but important property, was high (1.11) during high discharge and low (0.94) during low discharge, reflecting additional DIC input in the form of carbon dioxide (CO2), most likely from terrestrial organic matter decomposition, rather than bicarbonate (HCO3−) inputs due to drainage basin weathering processes. This is also a result of CO2 loss to the atmosphere due to rapid water transit during the wet season. Our data further show that elevated DIC in the Schuylkill River is substantially different than that in the Delaware River. Thus, tributary contributions must be considered when attributing estuarine DIC sources to the internal carbon cycle versus external processes such as drainage basin mineralogy, weathering intensity, and discharge patterns. Long-term records in the Delaware and Schuylkill rivers indicate shifts toward higher alkalinity in estuarine waters over time, as has been found in other estuaries worldwide. Annual DIC input flux to the estuary and export flux to the coastal ocean are estimated to be 15.7 ± 8.2  ×  109 mol C yr−1 and 16.5 ± 10.6  ×  109 mol C yr−1, respectively, while net DIC production within the estuary including inputs from intertidal marshes is estimated to be 5.1  ×  109 mol C yr−1. The small difference between riverine input and export flux suggests that, in the case of the Delaware Estuary and perhaps other large coastal systems with long freshwater residence times, the majority of the DIC produced in the estuary by biological processes is exchanged with the atmosphere rather than exported to the sea.

scholarly journals Development of a Biogeochemical and Carbon Model Related to Ocean Acidification Indices with an Operational Ocean Model Product in the North Western Pacific

2019 ◽  
Vol 11 (9) ◽  
pp. 2677 ◽  
Author(s):  
Miho Ishizu ◽  
Yasumasa Miyazawa ◽  
Tomohiko Tsunoda ◽  
Xinyu Guo
Keyword(s):  
Ocean Acidification ◽  
General Circulation ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Ocean Model ◽  
Western Pacific ◽  
Total Alkalinity ◽  
The North ◽  
North Western ◽  
North Western Pacific

We developed a biogeochemical and carbon model (JCOPE_EC) coupled with an operational ocean model for the North Western Pacific. JCOPE_EC represents ocean acidification indices on the background of the risks due to ocean acidification and our model experiences. It is an off-line tracer model driven by a high-resolution regional ocean general circulation model (JCOPE2M). The results showed that the model adequately reproduced the general patterns in the observed data, including the seasonal variability of chlorophyll-a, dissolved inorganic nitrogen/phosphorus, dissolved inorganic carbon, and total alkalinity. We provide an overview of this system and the results of the model validation based on the available observed data. Sensitivity analysis using fixed values for temperature, salinity, dissolved inorganic carbon and total alkalinity helped us identify which variables contributed most to seasonal variations in the ocean acidification indices, pH and Ωarg. The seasonal variation in the pHinsitu was governed mainly by balances of the change in temperature and dissolved inorganic carbon. The seasonal increase in Ωarg from winter to summer was governed mainly by dissolved inorganic carbon levels.

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