scholarly journals The Chaperonin GroEL Switches the Reaction Cycles in Response to the Concentration of Denatured Proteins

2014 ◽  
Vol 54 (4) ◽  
pp. 189-194
Author(s):  
Ryo IIZUKA ◽  
Taro UENO ◽  
Takashi FUNATSU
2010 ◽  
Vol 427 (2) ◽  
pp. 247-254 ◽  
Author(s):  
Tomoya Sameshima ◽  
Ryo Iizuka ◽  
Taro Ueno ◽  
Takashi Funatsu

Controversy exists over whether the chaperonin GroEL forms a GroEL–(GroES)2 complex (football-shaped complex) during its reaction cycle. We have revealed previously the existence of the football-shaped complex in the chaperonin reaction cycle using a FRET (fluorescence resonance energy transfer) assay [Sameshima, Ueno, Iizuka, Ishii, Terada, Okabe and Funatsu (2008) J. Biol. Chem. 283, 23765–23773]. Although denatured proteins alter the ATPase activity of GroEL and the dynamics of the GroEL–GroES interaction, the effect of denatured proteins on the formation of the football-shaped complex has not been characterized. In the present study, a FRET assay was used to demonstrate that denatured proteins facilitate the formation of the football-shaped complex. The presence of denatured proteins was also found to increase the rate of association of GroES to the trans-ring of GroEL. Furthermore, denatured proteins decrease the inhibitory influence of ADP on ATP-induced association of GroES to the trans-ring of GroEL. From these findings we conclude that denatured proteins facilitate the dissociation of ADP from the trans-ring of GroEL and the concomitant association of ATP and the second GroES.


Author(s):  
James F. Hainfeld ◽  
Frederic R. Furuya ◽  
Kyra Carbone ◽  
Martha Simon ◽  
Beth Lin ◽  
...  

A recently developed 1.4 nm gold cluster has been found to be useful in labeling macromolecular sites to 1-3 nm resolution. The gold compound is organically derivatized to contain a monofunctional arm for covalent linking to biomolecules. This may be used to mark a specific site on a structure, or to first label a component and then reassemble a multicomponent macromolecular complex. Two examples are given here: the chaperonin groEL and ribosomes.Chaperonins are essential oligomeric complexes that mediate nascent polypeptide chain folding to produce active proteins. The E. coli chaperonin, groEL, has two stacked rings with a central hole ∽6 nm in diameter. The protein dihydrofolate reductase (DHFR) is a small protein that has been used in chain folding experiments, and serves as a model substrate for groEL. By labeling the DHFR with gold, its position with respect to the groEL complex can be followed. In particular, it was sought to determine if DHFR refolds on the external surface of the groEL complex, or whether it interacts in the central cavity.


2019 ◽  
Author(s):  
Nishant Singh ◽  
Bruno Lainer ◽  
Georges Formon ◽  
Serena De Piccoli ◽  
Thomas Hermans

Nature uses catalysis as an indispensable tool to control assembly and reaction cycles in vital non-equilibrium supramolecular processes. For instance, enzymatic methionine oxidation regulates actin (dis)assembly, and catalytic guanosine triphosphate hydrolysis is found in tubulin (dis)assembly. Here we present a completely artificial reaction cycle which is driven by a chemical fuel that is catalytically obtained from a ‘pre-fuel’. The reaction cycle controls the disassembly and re-assembly of a hydrogel, where the rate of pre-fuel turnover dictates the morphology as well as the mechanical properties. By adding additional fresh aliquots of fuel and removing waste, the hydrogels can be re-programmed time after time. Overall, we show how catalysis can control fuel generation to control reaction / assembly kinetics and materials properties in life-like non-equilibrium systems.


2021 ◽  
Author(s):  
Patrick S. Schwarz ◽  
Sudarshana Laha ◽  
Jacqueline Janssen ◽  
Tabea Huss ◽  
Job Boekhoven ◽  
...  

Non-equilibrium, fuel-driven reaction cycles serve as model systems of the intricate reaction networks of life. Rich and dynamic behavior is observed when reaction cycles regulate assembly processes, such as phase...


1993 ◽  
Vol 268 (14) ◽  
pp. 9957-9959
Author(s):  
A. Horovitz ◽  
E.S. Bochkareva ◽  
A.S. Girshovich

1967 ◽  
Vol 242 (19) ◽  
pp. 4486-4489 ◽  
Author(s):  
Kirk C. Aune ◽  
Ahmad Salahuddin ◽  
Mario H. Zarlengo ◽  
Charles Tanford

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