Distribution Patterns and Ecological Niches of the Red-tongued Pit Viper (Gloydius ussuriensis) and the Central Asian Pit Viper (Gloydius intermedius) in Cheonmasan Mountain, South Korea

2021 ◽  
Vol 28 (6) ◽  
pp. 348-354
Author(s):  
Min Seock Do ◽  
Ki-Baek Nam
Keyword(s):  
South Korea ◽  
Ecological Niche ◽  
Distribution Patterns ◽  
Niche Differentiation ◽  
Habitat Characteristics ◽  
Ecological Niches ◽  
Mountainous Area ◽  
Dry Land ◽  
Central Asian ◽  
Geographical Environment

Studies on the distribution of species are important to understanding the interspecific ecological niche and habitat selection through geographic environmental information. Particularly, vipers in the same genus have been an important topic because they show differences in the preferred geographical environment, depending on the distance of the phylogenetic relationship. This study investigated the geographical environment of red-tongued pit vipers (Gloydius ussuriensis) and Central Asian pit vipers (Gloydius intermedius) in the mountainous area, Cheonmasan Mountain County Park, South Korea, from April 2012 to October 2014, to understand the relationships among their habitat characteristics and ecological niche. Red-tongued pit vipers mainly lived in low altitude, wet valley areas with a low solar reflectance, while Central Asian pit vipers inhabited high altitude, dry land with large amounts of sunshine. As a result, our study supports that the ecological niche of red-tongued pit vipers and Central Asian pit vipers, inhibiting in Cheonmasan Mountain was overlapped low according to the majority of geographical environmental variables. The differentiated diet preference might be took into consideration as one of the potential key factors to the ecological niche differentiation among two species.

scholarly journals Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes

2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Johannes Alneberg ◽  
Christin Bennke ◽  
Sara Beier ◽  
Carina Bunse ◽  
Christopher Quince ◽  
...  
Keyword(s):  
Ecological Niche ◽  
Environmental Gradients ◽  
Size Fraction ◽  
Distribution Patterns ◽  
Ecological Niches ◽  
The Baltic Sea ◽  
Phylogenetic Information ◽  
Functional Capabilities ◽  
A Genome ◽  
The Baltic

AbstractThe genome encodes the metabolic and functional capabilities of an organism and should be a major determinant of its ecological niche. Yet, it is unknown if the niche can be predicted directly from the genome. Here, we conduct metagenomic binning on 123 water samples spanning major environmental gradients of the Baltic Sea. The resulting 1961 metagenome-assembled genomes represent 352 species-level clusters that correspond to 1/3 of the metagenome sequences of the prokaryotic size-fraction. By using machine-learning, the placement of a genome cluster along various niche gradients (salinity level, depth, size-fraction) could be predicted based solely on its functional genes. The same approach predicted the genomes’ placement in a virtual niche-space that captures the highest variation in distribution patterns. The predictions generally outperformed those inferred from phylogenetic information. Our study demonstrates a strong link between genome and ecological niche and provides a conceptual framework for predictive ecology based on genomic data.

Understanding the ecological niche to elucidate spatial strategies of the southernmost Tupinambis lizards

2013 ◽  
Vol 34 (4) ◽  
pp. 551-565 ◽  
Author(s):  
Sofía Lanfri ◽  
Valeria Di Cola ◽  
Sergio Naretto ◽  
Margarita Chiaraviglio ◽  
Gabriela Cardozo
Keyword(s):  
Species Distribution ◽  
Evolutionary Biology ◽  
Species Distribution Models ◽  
Regional Scale ◽  
Distribution Patterns ◽  
Niche Differentiation ◽  
Ecological Niches ◽  
Distribution Models ◽  
Interspecific Differences ◽  
Spatial Strategies

Understanding factors that shape ranges of species is central in evolutionary biology. Species distribution models have become important tools to test biogeographical, ecological and evolutionary hypotheses. Moreover, from an ecological and evolutionary perspective, these models help to elucidate the spatial strategies of species at a regional scale. We modelled species distributions of two phylogenetically, geographically and ecologically close Tupinambis species (Teiidae) that occupy the southernmost area of the genus distribution in South America. We hypothesized that similarities between these species might have induced spatial strategies at the species level, such as niche differentiation and divergence of distribution patterns at a regional scale. Using logistic regression and MaxEnt we obtained species distribution models that revealed interspecific differences in habitat requirements, such as environmental temperature, precipitation and altitude. Moreover, the models obtained suggest that although the ecological niches of Tupinambis merianae and T. rufescens are different, these species might co-occur in a large contact zone. We propose that niche plasticity could be the mechanism enabling their co-occurrence. Therefore, the approach used here allowed us to understand the spatial strategies of two Tupinambis lizards at a regional scale.

scholarly journals Hybrid apomicts trapped in the ecological niches of their sexual ancestors

2015 ◽  
Vol 112 (18) ◽  
pp. E2357-E2365 ◽  
Author(s):  
Martin Mau ◽  
John T. Lovell ◽  
José M. Corral ◽  
Christiane Kiefer ◽  
Marcus A. Koch ◽  
...  
Keyword(s):  
Ecological Niche ◽  
Niche Breadth ◽  
Strong Association ◽  
Reproductive Mode ◽  
Niche Differentiation ◽  
Ecological Niches ◽  
Adaptive Potential ◽  
Ideal Model ◽  
Seed Formation ◽  
Species Specific

Asexual reproduction is expected to reduce the adaptive potential to novel or changing environmental conditions, restricting or altering the ecological niche of asexual lineages. Asexual lineages of plants and animals are typically polyploid, an attribute that may influence their genetic variation, plasticity, adaptive potential, and niche breadth. The genus Boechera (Brassicaceae) represents an ideal model to test the relative ecological and biogeographic impacts of reproductive mode and ploidy because it is composed of diploid sexual and both diploid and polyploid asexual (i.e., apomictic) lineages. Here, we demonstrate a strong association between a transcriptionally conserved allele and apomictic seed formation. We then use this allele as a proxy apomixis marker in 1,649 accessions to demonstrate that apomixis is likely to be a common feature across the Boechera phylogeny. Phylogeographic analyses of these data demonstrate (i) species-specific niche differentiation in sexuals, (ii) extensive niche conservation between differing reproductive modes of the same species, (iii) ploidy-specific niche differentiation within and among species, and (iv) occasional niche drift between apomicts and their sexual ancestors. We conclude that ploidy is a substantially stronger and more common driver of niche divergence within and across Boechera species although variation in both traits may not necessarily lead to niche evolution on the species scale.

scholarly journals Climatic affinities of Neotropical species of Capparaceae: an approach from ecological niche modelling and numerical ecology

2020 ◽  
Vol 193 (2) ◽  
pp. 263-275
Author(s):  
Jorge D Mercado Gómez ◽  
David A Prieto-Torres ◽  
Maylin Adriana Gonzalez ◽  
María Eugenia Morales Puentes ◽  
Tania Escalante ◽  
...  
Keyword(s):  
Tropical Forest ◽  
Ecological Niche ◽  
Distribution Patterns ◽  
Ecological Niche Modelling ◽  
Dry Forest ◽  
Ecological Niches ◽  
Niche Modelling ◽  
Response Curves ◽  
Multivariate Statistical ◽  
Seasonally Dry

Abstract In the Neotropics, the distribution of Capparaceae has been historically associated with seasonally dry forest (NSDF), but recent taxonomic studies have questioned this assumption. Given the environmental co-occurrence of species and the need to understand their relationships with the ecosystem, we use ecological niche modelling and numerical ecology methods to better describe the distribution patterns of Capparaceae and their climatic affinities with NSDF. We used the Maxent algorithm to model the ecological niches of 104 species of Capparaceae, which gave maximum values of the response curves for climatic suitability. These values were used to carry out multivariate statistical analyses [principal components analysis (PCA), non-metric multidimensional scaling (NMDS) and discriminant analysis (DA)] to identify ecological associations based on climatic similitude among species. Both PCA and NMDS showed that annual precipitation, precipitation of the wettest quarter and precipitation of the driest quarter were the most important climatic variables shaping distributions of species and their associations with NSDF, moist tropical forest (MTF) and wet tropical forest (WTF). Although we found 72 species associated with NSDF as previously reported, DA revealed an overlapping pattern among the three ecological/climatic assemblages (NSDF, MTF and WTF). This confirms the existence of transition zones and species with wider niches. Our results provide an important biogeographical framework of ecological patterns for species associated with NSDF, opening new lines of research on the reconstruction of distribution in future climatic scenarios or palaeo-distributions.

scholarly journals Ecological niche differentiation in Chiroxiphia and Antilophia manakins (Aves: Pipridae)

PLoS ONE ◽  
2021 ◽  
Vol 16 (1) ◽  
pp. e0243760
Author(s):  
Mariana Villegas ◽  
Bette A. Loiselle ◽  
Rebecca T. Kimball ◽  
John G. Blake
Keyword(s):  
Ecological Niche ◽  
Niche Overlap ◽  
Niche Differentiation ◽  
Ecological Niches ◽  
Niche Conservatism ◽  
Phylogenetic Distance ◽  
Evolutionary Time ◽  
Distribution Models ◽  
Ecological Differentiation ◽  
Niche Divergence

Species distribution models are useful for identifying the ecological characteristics that may limit a species’ geographic range and for inferring patterns of speciation. Here, we test a hypothesis of niche conservatism across evolutionary time in a group of manakins (Aves: Pipridae), with a focus on Chiroxiphia boliviana, and examine the degree of ecological differentiation with other Chiroxiphia and Antilophia manakins. We tested whether allopatric sister species were more or less similar in environmental space than expected given their phylogenetic distances, which would suggest, respectively, ecological niche conservatism over time or ecologically mediated selection (i.e. niche divergence). We modeled the distribution of nine manakin taxa (C. boliviana, C. caudata, C. lanceolata, C. linearis, C. p. pareola, C. p. regina, C. p. napensis, Antilophia galeata and A. bokermanni) using Maxent. We first performed models for each taxon and compared them. To test our hypothesis we followed three approaches: (1) we tested whether C. boliviana could predict the distribution of the other manakin taxa and vice versa; (2) we compared the ecological niches by using metrics of niche overlap, niche equivalency and niche similarity; and (3) lastly, we tested whether niche differentiation corresponded to phylogenetic distances calculated from two recent phylogenies. All models had high training and test AUC values. Mean AUC ratios were high (>0.8) for most taxa, indicating performance better than random. Results suggested niche conservatism, and high niche overlap and equivalency between C. boliviana and C. caudata, but we found very low values between C. boliviana and the rest of the taxa. We found a negative, but not significant, relationship between niche overlap and phylogenetic distance, suggesting an increase in ecological differentiation and niche divergence over evolutionary time. Overall, we give some insights into the evolution of C. boliviana, proposing that ecological selection may have influenced its speciation.

scholarly journals Ecological niche differentiation between Acanthodactylus micropholis and A. khamirensis (Sauria: Lacertidae) in southern Iran

2019 ◽  
Vol 36 ◽  
pp. 1-5 ◽  
Author(s):  
Nastaran Heidari
Keyword(s):  
Habitat Suitability ◽  
Ecological Niche ◽  
Species Distribution Modeling ◽  
Niche Overlap ◽  
Niche Differentiation ◽  
Valid Species ◽  
Ecological Niches ◽  
Species Differentiation ◽  
Ecological Niche Models ◽  
Niche Models

Acanthodactylusmicropholis Heidari, Rastegar-Pouyani, Rastegar-Pouyani & Rajabizadeh, 2013 and A.khamirensis Blanford, 1874 are genetically and morphologically distinct, but their ecological differentiation has not previously been evaluated. The ecological niche models of these two sister species Acanthodactylus were reconstructed using climate and geographical data. Species distribution modeling for A.micropholis and A.khamirensis was used to make predictions and showed that most parts of southern and southeastern Iran are suitable for the distribution of both species. Habitat suitability was mostly dependent upon minimum temperature of the coldest month and seasonal precipitation for A.micropholis and A.khamirensis, respectively. Niche similarity tests (niche overlap and identity tests) were performed to evaluate species differentiation based on the ecological species criterion. Our results indicate that both species have different ecological niches and are significantly separated from each other. Therefore, our study corroborates previous analyses based on molecular and morphological evidences that suggested that A.micropholis and A.khamirensis were valid species.

Habitat use and the coexistence of the sika deer and the Japanese serow, sympatric ungulates from Mt. Asama, central Japan

Mammalia ◽  
2020 ◽  
Vol 84 (6) ◽  
pp. 503-511
Author(s):  
Hayato Takada ◽  
Riki Ohuchi ◽  
Haruko Watanabe ◽  
Risako Yano ◽  
Risako Miyaoka ◽  
...  
Keyword(s):  
Habitat Use ◽  
Sika Deer ◽  
Cervus Nippon ◽  
Niche Differentiation ◽  
Ecological Niches ◽  
Dwarf Bamboo ◽  
Central Japan ◽  
Habitat Mosaic ◽  
The Japanese Archipelago ◽  
Japanese Serow

AbstractDifferential resource use allows for diverse species to specialize in ecological niches and thus coexist in a particular area. In the Japanese archipelago, increasing sika deer (Cervus nippon, Temminck 1836) densities have excluded the Japanese serow (Capricornis crispus, Temminck 1836), but in places where deer population densities are low, the two species coexist. We wanted to better understand their habitats and how these two ungulates manage to coexist. We evaluated the role of habitat use in the coexistence of these two sympatric ungulates on Mt. Asama, central Japan. Deer frequently used the dwarf bamboo-rich communities in autumn and winter, and their habitat use was not associated with topography. Serows frequently used deciduous broadleaf shrub-rich communities and steep slopes throughout the year. Consequently, their habitat use was significantly different in terms of vegetation and topography. Niche breadth suggests that deer tend to be generalists, whereas serows tend to be specialists. Niche differentiation in habitat use between deer and serows may make the coexistence of these similarly sized ungulates possible in Japanese mountainous zones. Therefore, the fine-grained habitat mosaic of different vegetation and topography areas might be the underlying feature that allows the coexistence of these two species.

scholarly journals Defining the niche for niche construction: evolutionary and ecological niches

2021 ◽  
Vol 36 (3) ◽  
Author(s):  
Rose Trappes
Keyword(s):  
Evolutionary Biology ◽  
Ecological Niche ◽  
Niche Construction ◽  
Habitat Degradation ◽  
Ecological Niches ◽  
Niche Concept ◽  
Definition Of ◽  
Compare And Contrast ◽  
Extreme Habitat

AbstractNiche construction theory (NCT) aims to transform and unite evolutionary biology and ecology. Much of the debate about NCT has focused on construction. Less attention has been accorded to the niche: what is it, exactly, that organisms are constructing? In this paper I compare and contrast the definition of the niche used in NCT with ecological niche definitions. NCT’s concept of the evolutionary niche is defined as the sum of selection pressures affecting a population. So defined, the evolutionary niche is narrower than the ecological niche. Moreover, when contrasted with a more restricted ecological niche concept, it has a slightly different extension. I point out three kinds of cases in which the evolutionary niche does not coincide with realized ecological niches: extreme habitat degradation, commensalism, and non-limiting or super-abundant resources. These conceptual differences affect the role of NCT in unifying ecology and evolutionary biology.

scholarly journals An ecological niche shift for Neanderthal populations in Western Europe 70,000 years ago

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
William E. Banks ◽  
Marie-Hélène Moncel ◽  
Jean-Paul Raynal ◽  
Marlon E. Cobos ◽  
Daniel Romero-Alvarez ◽  
...  
Keyword(s):  
Material Culture ◽  
Ecological Niche ◽  
Western Europe ◽  
Ecological Niche Modeling ◽  
Climatic Variability ◽  
Niche Shift ◽  
Ecological Niches ◽  
Middle Paleolithic ◽  
Niche Dynamics ◽  
Anatomically Modern Humans

AbstractMiddle Paleolithic Neanderthal populations occupied Eurasia for at least 250,000 years prior to the arrival of anatomically modern humans. While a considerable body of archaeological research has focused on Neanderthal material culture and subsistence strategies, little attention has been paid to the relationship between regionally specific cultural trajectories and their associated existing fundamental ecological niches, nor to how the latter varied across periods of climatic variability. We examine the Middle Paleolithic archaeological record of a naturally constrained region of Western Europe between 82,000 and 60,000 years ago using ecological niche modeling methods. Evaluations of ecological niche estimations, in both geographic and environmental dimensions, indicate that 70,000 years ago the range of suitable habitats exploited by these Neanderthal populations contracted and shifted. These ecological niche dynamics are the result of groups continuing to occupy habitual territories that were characterized by new environmental conditions during Marine Isotope Stage 4. The development of original cultural adaptations permitted this territorial stability.

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