Lyme borreliosis is the most common vector-borne disease in the Northern hemisphere, caused by spirochetes belonging to the
Borrelia burgdorferi
sensu lato (
Bb
sl) species complex which are transmitted by ixodid ticks.
Bb
sl species produce a family of proteins on the linear plasmid 54 (PFam54), some of which confer the functions of cell adhesion and inactivation of complement, the first line of host defense. However, the impact of PFam54 in promoting
Bb
sl pathogenesis remains unclear because of the hurdles to simultaneously knock out all PFam54 proteins in a spirochete. Here, we describe two
Borrelia bavariensis
(
Bbav
) strains, PBN and PNi, isolated from patients naturally lacking PFam54 but maintaining the rest of the genome with greater than 95% identity to the reference
Bbav
strain PBi. We found that PBN and PNi less efficiently survive in human serum than PBi. Such defects were restored by introducing two
Bbav
PFam54 recombinant proteins, BGA66 and BGA71, confirming the role of these proteins in providing complement evasion of
Bbav
. Further, we found that all three strains remain detectable in various murine tissues 21 days post subcutaneous infection, supporting the non-essential role of
Bbav
PFam54 in promoting spirochete persistence. This study identified and utilized isolates deficient in PFam54 to associate the defects with the absence of these proteins, building the foundation to further study the role of each PFam54 protein in contributing to
Bb
sl pathogenesis.
Importance
To establish infections, Lyme borreliae utilize various means to overcome the host’s immune system. Proteins encoded by the PFam54 gene array play a role for spirochete survival
in vitro
and
in vivo
. Moreover, this gene array has been described in all currently available Lyme borreliae genomes. By investigating the first two
Borrelia bavariensis
isolates naturally lacking the entire PFam54 gene array, we showed that both patient isolates display an increased susceptibility to human serum, which can be rescued in the presence of two PFam54 recombinant proteins. However, both isolates remain infectious to mice after intradermal inoculation suggesting the non-essential role of PFam54 during long-term but may differ slightly in the colonization of specific tissues. Furthermore, these isolates show high genomic similarity to type-strain PBi (>95%) and could be used in future studies investigating the role of each PFam54 protein in Lyme borreliosis pathogenesis.