Taxonomic, morphometric and limnological assessment of the commercially important ichthyofauna of Sakhakot Stream, Malakand, Pakistan

The present study was conducted for the taxonomic, morphometric and limnological assessment of the commercially important ichthyofauna of Sakhakot Stream, Malakand, Pakistan. The study area was divided into three sites along the water course namely Dargai Stream, Sakhakot Stream and Shergarh Stream. Fish samples were collected randomly during January to August 2017 with the help of fish gears. A taxonomic key was designed for the collected fish specimens. Ten fish species were identified belonging to 3 orders and 4 families. Family Cyprinidae was the dominant family with seven representative species while families Siluridae, Nemacheilidae and Mastacembelidae were represented by one species each. Lower mean total length and standard length was recorded in Puntius conchonius (Hamilton, 1822) as 9.2 ± 0.6 cm and 7.3 ± 0.6 cm respectively, while highest mean total length and standard length was recorded in Mastacembelus armatus (Lacepede, 1800) as 28.1 ± 1.7 cm and 15.9 ± 2.4 cm respectively. Mean pH of the water ranged from 6.1 at Shergarh Stream in August to 8.7 at Sakhakot Stream in January. Average temperature range was recorded from 10.9 °C in January at Dargai Stream to 18.7 °C in August at Shergarh Stream. No statistically significant difference was found for temperature (p = 0.96) and pH (p = 0.14) in the three water streams. The present study will provide a baseline for the rearing and enhancement of wild stock of the commercially important ichthyofauna in the field of aquaculture and fisheries.

Comparative brain analysis of wild and hatchery reared Mahseer (Tor putitora) relative to their body weight and length

The present study was aimed at comparing the brain size of mahseer (Tor putitora) in relation to their body weight and standard length, to investigate the potential impact of rearing environment on brain development in fish. The weight of the brain and three of its subdivisions cerebellum (CB), optic tectum (OT), and telencephalon (TC) were measured for both wild and hatchery-reared fish. The data was analysed using multiple analysis of covariance (MANCOVA), analysis of covariance (ANCOVA), and discriminate function analysis (DFA). We found the fish reared under hatchery conditions exhibit smaller brain size related to body weight, when compared to the wild ones. A significant (p<0.5) difference was observed in the length of CB and OT concerning the standard body length while no significant difference was found in TC of the fish from both the origins. The results of the current study highlight a logical assumption that neural deficiency affects the behaviour of fish, that’s why the captive-reared fish show maladaptive response and face fitness decline when released to the natural environment for wild stock enhancement. The current study concluded that hatchery-reared fish exhibit variations in gross brain morphology as compared to their wild counterpart.

Age-related changes in microRNAs expression in cruciate ligaments of wild-stock house mice

Aim: Cruciate ligaments (CLs) of the knee joint are commonly injured following trauma or ageing. MicroRNAs (miRs) are potential therapeutic targets in musculoskeletal disorders. This study aimed to 1) identify if wild-stock house (WSH) mice are an appropriate model to study age-related changes of the knee joint and 2) investigate expression of miRs in ageing murine CLs. Methods: Knee joints were collected from 6 and 24 months old C57BL/6 and WSH mice (Mus musculus domesticus) for histological analysis. RNA extraction and qPCR gene expression were performed on CLs in 6, 12, 24, and 30 month WSH old mice. Expression of miR targets in CLs was determined, followed by analysis of predicted mRNA target genes and Ingenuity Pathway Analysis. Results: Higher CL and knee OARSI histological scores were found in 24 month old WSH mice compared to 6 and 12 month old C57BL/6 and 6 month old WSH mice (p< 0.05). miR-29a and miR-34a were upregulated in 30 month-old WSH mice in comparison to 6, 12 and 24-month-old WSH mice (p<0.05). Ingenuity Pathway Analysis on miR-29a and 34a targets was associated with inflammation through interleukins, TGFβ and Notch genes and p53 signalling. Collagen type I alpha 1 chain (COL1A1) correlated negatively with both miR-29a (r= -0.35) and miR-34a (r= -0.33). Conclusion: The findings of this study support WSH house mice as an accelerated ageing model of the murine knee joint. This study also indicated that miR-29a and 34a may be important regulators of COL1A1 gene expression in murine CLs.

Resource Status and Effect of Long-Term Stock Enhancement of Large Yellow Croaker in China

The large yellow croaker, Larimichthys crocea, was once the most abundant and economically important marine fish in China. Thus far, it has also been the most successful mariculture fish species in China. However, its wild stock severely declined in the 1970s because of overexploitation, and therefore hatchery release has been carried out for stock enhancement since 2000. As a migratory fish, large yellow croaker was divided into three geographical stocks according to ambiguous morphological and biological characteristics in early documents. To investigate the identity of wild large yellow croaker populations and assess the influence of hatchery supplementation on wild populations, a total of 2,785 cultured individuals and 591 wild individuals were collected from 91 hatcheries and six wild populations along the coast of mainland China and analyzed using two mitochondrial genes [cytochrome oxidase I (COI) and cytochrome b (Cyt b)] and one nuclear gene (RyR3). The higher haplotype diversity and moderate nucleotide diversity of wild large yellow croaker indicated that overexploitation, which caused a sharp decrease in biomass, did not lead to a loss of genetic diversity. According to phylogenetic construction and network analysis, the absence of a significant population structure pattern revealed a single panmictic population of wild large yellow croaker with exception of a population collected from the Sansha Bay, which showed high genetic relatedness to the cultured population, suggesting significant genetic effects resulting from stock enhancement. Overall, our study suggests no genetic differentiation in the entire wild population of large yellow croaker, which means that we have great flexibility in mixing and matching farmed and wild populations. However, since the result showed that domestication, the relaxation of purifying selection, increased genetic loads, and maladapted farmed fish will be at a selective disadvantage when cultured juveniles are released in the wild, the effectiveness of stock enhancement and the negative impact of hatchery-wild fish hybridization on the wild population must be carefully evaluated in future.

Robust host source tracking building on the divergent and non-stochastic assembly of gut microbiome in wild and farmed large yellow croaker

BackgroundRevealing the potential divergence of gut microbiome between farmed and wild fishes, and its underlying mechanism are informative to improve its mariculture, as well as establish the molecular marker of host source tracking, which is an alternative to the yet-to-be-established host genetic marker. A candidate for testing the feasibility is the large yellow croaker, Larimichthys crocea , which is carnivorous and ranking the top maricultural fish in China with depleted wild resource and frequently farmed individuals escaping and fry releasing for wild stock enhancement. ResultsThe rectums of wild (n=212) and farmed (n=79) individuals from multiple batches were collected for the profiling of gut bacterial communities. The farmed individuals had a higher alpha diversity and lower bacterial loading than the wild individuals. The gut microbiota of the two sources exhibited divergence and high inter-batch variation, featured by the dominance of Psychrobacter spp. in the wild group. Predicted function of gut microbiome and representative isolates suggested that diet could be a key factor for the divergence, which was linked to the high ratio and diverse source of carbohydrate in formulated feed and low pH of rectum contents in farmed fishes. The non-stochastic distribution patterns of the core gut microbiota of the wild and farmed individuals indicated the feasibility of microbiota-based host source tracking through machine learning algorithm. Random forest classifier building on the divergence and non-stochastic assembly of gut microbiome was robust in host source tracking for individuals from all batches including a newly introduced batch. ConclusionsOur study revealed the divergence of the gut microbiota between wild and farmed croakers and suggested that diet change is an underlying key factor for the divergence. As the first time, we verified that with less biased datasets and non-stochastic pattern, gut microbiota can be robustly applied to the tracking of host source even in carnivorous fish.

Invasive Potential of Nile Tilapia, Oreochromis Niloticus (Linnaeus, 1758) From the Tributary of the Ganga River, Central India

The natural fishery or wild stock of fishes especially fresh water in India is significantly declining due to manmade stressors. The invasion of fishes and size composition are an essential component of stream, river and other large water bodies ecosystem and represents an evident of structure, function, depth and health of stream/river. During study period 683 specimens of Oreochromis niloticus were collected from February 2019 to January 2020 in Sirsa fish landing centre from the lower stretch of the Tons river at Prayagraj, Uttar Pradesh, India. Size composition of fishes was varied from 82 to 463 mm (total length). The maximum total length of O. niloticus in the catches indicated that its increasing colonisation success in the river Tons. Size composition of fishes was also indicated that the stock of O. niloticus in the Tons river was in healthy condition. The 231-260 mm size group was most dominated (15.67%) compared to 261-290 mm (12.44%) and 291-320 mm (11.71%) in the total exploited stock. The middle size group was maximum exploited with 51.24% from the Tons river at Prayagraj. Higher size group contributed sizeable proportion with 25.04% in the exploited stock. The exploitation pattern was unsystematic in higher size group due to contribution of higher proportion. Current exploitation pattern is unsystematic but O. niloticus is powerfully invaded from the lower stretch of the Tons river at Prayagraj.

Catch Rates for Sturgeon Chubs and Sicklefin Chubs in the Upper Missouri River 2004–2016 and Correlations with Biotic and Abiotic Variables

A multiweek standardized sampling regime during 2004–2016 in a 60-km reach of the Upper Missouri River assessed reproduction and catch rates for Sturgeon Chub Macrhybopsis gelida and Sicklefin Chub Macrhybopsis meeki. We sampled age-0 Macrhybopsis (primarily Sturgeon Chubs, but potentially including Sicklefin Chubs) all years to indicate successful reproduction, but noted an inverse correlation of catch per unit area (CPUA) with year. There was an inverse correlation for CPUA of age-1+ Sturgeon Chubs with year. There was no correlation for CPUA of age-1+ Sicklefin Chubs with year, but we noted a depression in CPUA during 2010 and 2012. The study reach includes restoration directives for federally endangered Pallid Sturgeon Scaphirhynchus albus, with 245,000 hatchery-origin Pallid Sturgeon (HOPS) stocked since 1998 to supplement the declining wild stock. Pallid Sturgeon longer than 350 mm transition to piscivory and are known to prey on Sturgeon Chubs and Sicklefin Chubs. We examined the hypothesis that mass additions of HOPS to the existing predator community could have population-level effects on the two chub species. Population modeling for the stocked HOPS through time yielded estimates of nearly 1,300 piscivore-sized HOPS in 2004, an increase to 26,000 HOPS in 2012, and decreasing numbers through 2016 (14,500). Candidate variables that also included discharge and water temperature best supported a negative correlation between HOPS abundance and age-0 Macrhybopsis CPUA. We found an inverse correlation for CPUA of age-1+ Sturgeon Chubs and estimated HOPS abundance, and there was also evidence of an inverse association between age-1+ Sicklefin Chub CPUA and HOPS in the study area. Results for a 60-km reach of the Upper Missouri River suggest declining CPUA for age-0 Macrhybopsis and Sturgeon Chubs during 2004–2016 and modest recovery of Sicklefin Chubs after 2012. Although causative factors driving CPUA changes through time are not known, correlative analyses suggest that large numbers of HOPS added to the Missouri River predator community potentially influence CPUA of Sturgeon Chubs and Sicklefin Chubs in the study area. Testing this hypothesis will require expanded quantification of chub populations and HOPS numbers through time.

Multigenerational exposure to warming and fishing causes recruitment collapse, but size diversity and periodic cooling can aid recovery

Global warming and fisheries harvest are significantly impacting wild fish stocks, yet their interactive influence on population resilience to stress remains unclear. We explored these interactive effects on early-life development and survival by experimentally manipulating the thermal and harvest regimes in 18 zebrafish (Danio rerio) populations over six consecutive generations. Warming advanced development rates across generations, but after three generations, it caused a sudden and large (30–50%) decline in recruitment. This warming impact was most severe in populations where size-selective harvesting reduced the average size of spawners. We then explored whether our observed recruitment decline could be explained by changes in egg size, early egg and larval survival, population sex ratio, and developmental costs. We found that it was most likely driven by temperature-induced shifts in embryonic development rate and fishing-induced male-biased sex ratios. Importantly, once harvest and warming were relaxed, recruitment rates rapidly recovered. Our study suggests that the effects of warming and fishing could have strong impacts on wild stock recruitment, but this may take several generations to manifest. However, resilience of wild populations may be higher if fishing preserves sufficient body size diversity, and windows of suitable temperature periodically occur.