Growth of Lahontan Cutthroat Trout from multiple sources re-introduced into Sagehen Creek, CA

Lahontan Cutthroat Trout Oncorhynchus clarkii henshawi have experienced massive declines in their native range and are now a threatened species under the US Endangered Species Act. A key management goal for this species is re-establishing extirpated populations using translocations and conservation hatcheries. In California USA, two broodstocks (Pilot Peak and Independence Lake) are available for translocation, in addition to potential wild sources. Yet suitability of these sources for re-introduction in different ecosystem types and regions remains an open and important topic. We conducted growth experiments using Lahontan Cutthroat Trout stocked into Sagehen Creek, CA USA. Experiments evaluated both available broodstocks and a smaller sample of wild fish translocated from a nearby creek. Fish from the Independence Lake source had significantly higher growth in weight and length compared to the other sources. Further, Independence Lake fish were the only stock that gained weight on average over the duration of the experiment. Our experiments suggest fish from the Independence Lake brood stock may be useful for re-introduction efforts into small montane headwater streams in California.

Metabolic performance and thermal preference of Westslope Cutthroat Trout Oncorhynchus clarkii lewisi and non-native trout across an ecologically relevant range of temperatures

The physiology and behaviour of fish are strongly affected by ambient water temperature. Physiological traits related to metabolism, such as aerobic scope (AS), can be measured across temperature gradients and the resulting performance curve reflects the thermal niche that fish can occupy. We measured AS of Westslope Cutthroat Trout (Oncorhynchus clarkii lewisi) at 5, 10, 15, 20, and 22°C and compared temperature preference (Tpref) of the species to non-native Brook Trout, Brown Trout, and Rainbow Trout. Intermittent-flow respirometry experiments demonstrated that metabolic performance of Westslope Cutthroat Trout was optimal at ~15 °C and decreased substantially beyond this temperature, until lethal temperatures at ~25 °C. Adjusted preferred temperatures across species (Tpref) were comparatively high, ranging from 17.8-19.9 °C, with the highest Tpref observed for Westslope Cutthroat Trout. Results suggest that although Westslope Cutthroat Trout is considered a cold-water species, they do not prefer or perform as well in cold water (≤ 10°C), thus, can occupy a warmer thermal niche than previously thought. The metabolic performance curve (AS) can be used to develop species‐specific thermal criteria to delineate important thermal habitats and guide conservation and recovery actions for Westslope Cutthroat Trout.

The interactive effects of stream temperature, stream size, and non-native species on Yellowstone cutthroat trout

Climate change and non-native species are considered two of the biggest threats to native salmonids in North America. We evaluated how non-native salmonids and stream temperature and discharge were associated with Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) distribution, abundance, and body size, to gain a more complete understanding of the existing threats to native populations. Allopatric Yellowstone cutthroat trout were distributed across a wide range of average August temperatures (3.2 to 17.7ºC), but occurrence significantly declined at colder temperatures (<10 ºC) with increasing numbers of non-natives. At warmer temperatures occurrence remained high, despite sympatry with non-natives. Yellowstone cutthroat trout relative abundance was significantly reduced with increasing abundance of non-natives, with the greatest impacts at colder temperatures. Body sizes of large Yellowstone cutthroat trout (90th percentile) significantly increased with warming temperatures and larger stream size, highlighting the importance of access to these more productive stream segments. Considering multiple population-level attributes demonstrates the complexities of how native salmonids (such as Yellowstone cutthroat trout) are likely to be affected by shifting climates.

Gene expression estimates: Influence of sequencing library construction, fish sampling methods, and tissue harvesting time

RNA sequencing (RNA-Seq) is becoming a popular method for measuring gene expression in non-model organisms, including wild populations sampled in the field. While RNA-Seq can be used to measure gene expression variation among wild-caught individuals and can yield important biological insights into organismal function, technical variables may also influence gene expression estimates. We examined the influence of multiple technical variables on estimated gene expression in a non-model fish species, the westslope cutthroat trout (Oncorhynchus clarkii lewisi), using two RNA-Seq methods: 3’ RNA-Seq and whole mRNA-Seq. We evaluated the effects of dip netting versus electrofishing, and of harvesting tissue immediately versus 5 minutes after euthanasia on estimated gene expression in blood, gill, muscle, and liver. We found higher RNA degradation in the liver compared to the other tissues. There were fewer expressed genes in blood compared to gill and muscle. We found no difference in gene expression among sampling methods or due to a delay in tissue collection. However, we detected fewer genes with 3’ RNA-Seq than with whole mRNA-Seq and found statistically significant differences in gene expression between 3’ RNA-Seq and whole mRNA-Seq. The magnitude and direction of these differences does not appear to be dependent on gene type or length. Our findings indicate that RNA-Seq is robust to the technical variables related to the field sampling techniques tested here but varies based on the tissue sampled and the RNA-Seq library used. This study advances understanding of usefulness of RNA-Seq to study gene expression variation in evolution, ecology, and conservation.

Presence of Microplastics in the Food Web of the Largest High-Elevation Lake in North America

Microplastics have been documented in aquatic and terrestrial ecosystems throughout the world. However, few studies have investigated microplastics in freshwater fish diets. In this study, water samples and three trophic levels of a freshwater food web were investigated for microplastic presence: amphipods (Gammarus lacustris), Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri), and lake trout (Salvelinus namaycush). Microplastics and other anthropogenic materials were documented in water samples, amphipods, and fish, then confirmed using FTIR (Fourier-transform infrared) and Raman spectroscopy. Our findings confirmed the presence of microplastics and other anthropogenic materials in three trophic levels of a freshwater food web in a high-elevation lake in a national park, which corroborates recent studies implicating the global distribution of microplastics. This study further illustrates the need for global action regarding the appropriate manufacturing, use, and disposal of plastics to minimize the effects of plastics on the environment.

Morphological and genetic concordance of cutthroat trout diversification from western North America

The cutthroat trout, Oncorhynchus clarkii (Richardson, 1836), is one of the most widely distributed species of freshwater fish in western North America. Occupying a diverse range of habitats, they exhibit significant phenotypic variability that is often recognized by intraspecific taxonomy. Recent molecular phylogenies have described phylogenetic diversification across cutthroat trout populations, but no study has provided a range-wide morphological comparison of taxonomic divisions. In this study, we used linear and geometric-based morphometrics to determine if phylogenetic and subspecies divisions correspond to morphological variation in cutthroat trout, using replicate populations from throughout the geographic range of the species. Our data indicate significant morphological divergence of intraspecific categories in some, but not all, cutthroat trout subspecies. We also compare morphological distance measures with distance measures of mtDNA sequence divergence. DNA sequence divergence was positively correlated with morphological distance measures, indicating that morphologically more similar subspecies have lower sequence divergence in comparison to morphologically distant subspecies. Given these results, integrating both approaches to describing intraspecific variation may be necessary for developing a comprehensive conservation plan in wide-ranging species.

Influence of water temperature and biotic interactions on the distribution of Westslope Cutthroat Trout (Oncorhynchus clarkii lewisi) in a population stronghold under climate change

Climate warming is expected to have substantial impacts on native trout across the Rocky Mountains, but there is little understanding of how these changes affect future distributions of co-occurring native fishes within population strongholds. We used mixed-effects logistic regression to investigate the role of abiotic (e.g., temperature) and biotic factors (Bull Trout presence, Salvelinus confluentus) on distributions of Westslope Cutthroat Trout (Oncorhynchus clarkii lewisi; WCT) in the North Fork Flathead River, USA and Canada. The probability of WCT presence increased with stream temperature and decreased with channel gradient and Bull Trout presence, yet the effect of Bull Trout was reduced with increasing pool densities. Combining this model with spatially-explicit stream temperature projections, we predict a 29% increase in suitable habitat under high emissions through 2075, with gains at mid-elevation sites predicted to exceed Bull Trout thermal tolerances and high-elevation sites expected to become more thermally suitable for WCT. Our study illustrates the importance of considering abiotic and biotic drivers to assess species response to climate change, helping to guide local scale climate adaptation and management.