The complete chloroplast genome of Glycyrrhiza uralensis Fisch. isolated in Korea (Fabaceae)

The chloroplast genome of Glycyrrhiza uralensis Fisch was sequenced to investigate intraspecific variations on the chloroplast genome. Its length is 127,689 bp long (34.3% GC ratio) with atypical structure of chloroplast genome, which is congruent to those of Glycyrrhiza genus. It includes 110 genes (76 protein-coding genes, four rRNAs, and 30 tRNAs). Intronic region of ndhA presented the highest nucleotide diversity based on the six G. uralenesis chloroplast genomes. A total of 150 single nucleotide polymorphisms and 10 insertion and deletion (INDEL) regions were identified from the six G. uralensis chloroplast genomes. Phylogenetic trees show that the six chloroplast genomes of G. uralensis formed the two clades, requiring additional studies to understand it.

Comparative studies on Culex bitaeniorhynchus Giles (1901) and its tenax variant (Diptera: Culicidae) in Chandigarh, India

During present investigations the detailed morphotaxonomic studies of Culex bitaeniorhychus revealed that it exists in two forms i.e typical and tenax in and around Chandigarh. Various intraspecific variations in the morphology and male genitalia were observed in both these forms. The main aim of this study is to distinguish these two forms of Cx. bitaeniorhynchus and their separation from other closely related species. The intraspecific variants of these forms have been studied further with respect to phallosome regions of the male genitalia. For assessing the significant differences among their phenotypic characteristics one–way ANOVA was done along with pair-wise comparisons of samples means. Some of the earlier workers have considered tenax form, a synonym of Cx. infula which is another closely related species of Cx. bitaeniorhynchus. But, on the basis of remarkable differences observed between tenax and infula, it is suggested that these two are separate taxons and should not be synonymised.

Endosymbiont Communities in Pachyseris speciosa Highlight Geographical and Methodological Variations

Reef-building corals live in symbiosis with the phototrophic dinoflagellate family Symbiodiniaceae, which comprises diverse genera such as Cladocopium and Durusdinium. Pachyseris speciosa, a widely distributed Indo-Pacific coral found in a variety of reef habitats, is known to be associated with these two Symbiodiniaceae genera, but little is known about the biogeographic variability of the endosymbiont communities across the region. In this study, the diversity and dominance patterns of Symbiodiniaceae at the western and eastern areas of the Central Indo-Pacific region were examined. We sampled Pachyseris speciosa colonies at seven and six sites in Singapore and Papua New Guinea, respectively, and genotyped their endosymbionts based on the internal transcribed spacer (ITS) markers using two distinct methods, quantitative polymerase chain reaction (qPCR) and high-throughput sequencing (HTS). Results showed 92% of all colonies in Singapore exhibiting Cladocopium dominance. There was a higher abundance of Durusdinium compared to Cladocopium in certain colonies from one site, Pulau Hantu (mean Durusdinium abundance of 90%, compared to 0–14% among all other sites). In contrast, variation in the endosymbiont communities was generally higher among sites in Papua New Guinea. Cladocopium expectedly dominated most colonies (75%), although colonies from Kimbe Bay (85%) and Kavieng (65%) showed Durusdinium dominance. Between localities, relative genus abundances based on qPCR were not significantly different, but HTS showed that the ratio of Durusdinium over Cladocopium was significantly higher in Papua New Guinea corals. Notably, 6% of colonies from Singapore and 15% from Papua New Guinea showed endosymbiont dominance patterns that were inconsistent between the two methods, underscoring the need for further validation of symbiotic algal quantification based on HTS. The richness of ITS2 type profiles was clearly lower among colonies from the impacted and turbid reefs of Singapore compared to the less urbanized reefs of Papua New Guinea. These coral intraspecific variations of Symbiodiniaceae communities within and among localities suggest that local conditions are important drivers of endosymbiosis and may ultimately influence corals’ resilience against global stressors such as ocean warming.

The Spatial Heterogeneity of the Black Scorpionfish, Scorpaena porcus (Scorpaenidae): Differences in Length, Dietary and Age Compositions

The present study assessed spatial variations in several biological characteristics of Scorpaena porcus Linnaeus, 1758 and estimated length structure, dietary composition and growth parameters for the species. Sampling was carried out in two areas, about 200 km apart, in the coastal Adriatic Sea, which is the northernmost region of the Mediterranean. A total of 388 specimens of S. porcus were caught, 233 from the Split area and 155 from the Pag Island area, and a higher proportion of individuals in the ≤15 cm length classes were found in the Split area. The results of the age, growth and diet analyses demonstrated that the black scorpionfish is a slow-growing and long-lived species that feeds on a wide variety of plant and animal taxa and shows a high selectivity for crustacean decapods. Detailed comparisons and multivariate analyses showed significant fine-scale spatial structuring of the investigated species, as observed length, dietary and age compositions were heterogeneous among the two areas. Fish from the Pag Island area ingested a greater diversity of the prey types, fed to a greater extent on fishes, reached the highest total length and showed a higher growth rate. Such intraspecific variations could reflect adaptations to different environmental conditions and support the geographical scale at which local black scorpionfish populations should be managed.

A New Mitochondrial Genome of Sogatella furcifera (Horváth) (Hemiptera: Delphacidae) and Mitogenome-Wide Investigation on Polymorphisms

White-backed planthopper (WBPH), Sogatella furcifera (Horváth), is one of the major sap-sucking rice pests in East Asia. We have determined a new complete mitochondrial genome of WBPH collected in the Korean peninsula using NGS technology. Its length and GC percentages are 16,613 bp and 23.8%, respectively. We observed one polymorphic site, a non-synonymous change, in the COX3 gene with confirmation heteroplasmy phenomenon within individuals of WBPH by PCR amplification and Sanger sequencing, the first report in this species. In addition, this heteroplasmy was not observed in wild WBPH populations, suggesting that it may be uncommon in fields. We analyzed single nucleotide polymorphisms, insertion, and deletions, and simple sequence repeats among the three WBPH mitogenomes from Korea and China and found diverse intraspecific variations, which could be potential candidates for developing markers to distinguish geographical populations. Phylogenetic analysis of 32 mitogenomes of Delphacidae including the three WBPH mitogenomes suggested that Delphacinae seems to be monophyletic and Sogatella species including WBPH are clearly formed as one clade. In the future, it is expected that complete mitogenomes of individuals of geographically dispersed WBPH populations will be used for further population genetic studies to understand the migration pathway of WBPH.

Adult Shell-size Regulation in Conispirally-coiled Shells: Evidence for a Widespread Negative Covariance between Whorls Growth-rate and the Final Number of Whorls in Land Snails

As shown, in particular, by the late S.J. Gould, the involvement of a regulation process, aiming at limiting the range of intraspecific variations in adult shell size, in those land snail species with determinate growth, can be indirectly, but conveniently, diagnosed by highlighting a negative covariance between the whorls growth-rate and the whorls number reached at adulthood. However, up to now, such kind of regulation had only been demonstrated in very few cases among land snails and shelled Gastropods in general. Accordingly, quite more extensive checking is required, across both the taxonomic spectrum and the geometrical range of shell profiles. The present report is a very preliminary contribution addressing these issues, which have been neglected for too long. Considering a still limited number of eight species, yet largely encompassing both taxonomic range and shell profiles, it is shown that strong negative covariances between whorls growth-rate and whorls number are systematically highlighted, thereby supporting the involvement of an efficient regulation process of adult shell size and shape in each eight species. Moreover, the degree of regulation of the adult shell size has been quantified and this regulation proves being remarkably effective as a whole, while yet remaining highly species-specific, with very significant disparities among species – and this, somewhat surprisingly, being quite irrespective of the type of geometrical profiles of shells, among the studied species.

Summer Heatwave Impacts on the European Kelp Saccharina latissima Across Its Latitudinal Distribution Gradient

Kelps are important foundation species in coastal ecosystems currently experiencing pronounced shifts in their distribution patterns caused by ocean warming. While some populations found at species’ warm distribution edges have been recently observed to decline, expansions of some species have been recorded at their cold distribution edges. Reduced population resilience can contribute to kelp habitat loss, hence, understanding intraspecific variations in physiological responses across a species’ latitudinal distribution is crucial for its conservation. To investigate potential local responses of the broadly distributed kelp Saccharina latissima to marine heatwaves in summer, we collected sporophytes from five locations in Europe (Spitsbergen, Bodø, Bergen, Helgoland, Locmariaquer), including populations exposed to the coldest and warmest local temperature regimes. Meristematic tissue from sporophytes was subjected to increasing temperatures of Δ+2, Δ+4 and Δ+6°C above the respective mean summer temperatures (control, Δ±0°C) characteristic for each site. Survival and corresponding physiological and biochemical traits were analyzed. Vitality (optimum quantum yield, Fv/Fm) and growth were monitored over time and biochemical responses were measured at the end of the experiment. Growth was highest in northern and lowest in southern populations. Overall, northern populations from Spitsbergen, Bodø and Bergen were largely unaffected by increasing summer temperatures up to Δ+6°C. Conversely, sporophytes from Helgoland and Locmariaquer were markedly stressed at Δ+6°C: occurrence of tissue necrosis, reduced Fv/Fm, and a significantly elevated de-epoxidation state of the xanthophyll cycle (DPS). The variations in phlorotannins, mannitol and tissue C and N contents were independent of temperature treatments and latitudinal distribution pattern. Pronounced site-specific variability in response to increasing temperatures implies that exceeding a threshold above the mean summer temperature exclusively affect rear-edge (southernmost) populations.

Radular Morphology of Thiarid from Raja Ampat

Radula in gastropods is considered as a constant and conservative character that can be used in classification and phylogenetic at certain taxa level. However, character of radula is also ecophenotypic, so that the morphology of the radula can also indicates intraspecific variations that able to detect differences among species. The insights of the radular morphology specific to Thiaridae is important for classifying species within this family. Through an enzymatic procedure using the proteinase-K, five radula of Thiarid from Raja Ampat were extracted. The results of research on radula showed that the five species studied had the taeniglossan radula type. The band of the radula is 1.8 - 4.8 mm long and consists of marginal teeth, lateral teeth, and rachidian. The radula formula is 2/1/R/1/2 with a 3-4/1/3-4 rachidian pattern and a 2-3/1/2-3 lateral teeth pattern. The mesocone shape of the rachidian and lateral teeth varies between rounded and pointed.