Diversity and time-series analyses of Caribbean deep-sea coral and sponge assemblages on the tropical island slope of Isla de Roatán, Honduras

Shore-based submersible operations, from 2006 to 2020, have allowed us to examine megabenthic assemblages along the island margin of Isla de Roatán from depths of about 150 to 750 m, including repeated observations of the same organisms. These dives were used to photo-document a diverse benthic assemblage and observe the health and condition of the sessile fauna in a well-explored but relatively undocumented area of the Mesoamerican Reef. Samples were collected by dip net, and some dives profiled the water column chemistry in the year 2011. The deep-sea coral assemblage observed off Roatan exhibits high abundance and diversity. The sessile habitat-forming taxa consist primarily of at least 20 different octocorals (e.g., Plexauridae, Primnoidae, Coralliidae, Isididae, and Ellisellidae) and 20 different sponges each (Demospongiae and Hexactinellida), with several known and unknown taxa of Zoantharia, Antipatharia (Bathypathes spp), and Scleractinia (e.g., Desmophyllum pertusum, Dendrophyllia alternata, Madracis myriaster, and solitary taxa). Crinoidea were also abundant and diverse, represented by at least nine species. Epifaunal assemblages associated with corals include at least 24 macroinvertebrate species dominated by Asteroschema laeve (Ophiuroidea) and Chirostylus spp. (Decapoda: Anomura). Repeated observations of a few large octocoral colonies over many years illustrate patterns of predation, recolonization, and epibiont host fidelity, including a 14-year record of decline in a plexaurid octocoral (putatively Paramuricea sp.) and loss of its resident ophiuroids. The shore-based submersible provides a practical and relatively inexpensive platform from which to study coral and sponge assemblages on a deep tropical island slope. The deep-sea coral gardens are likely to harbor new species and new discoveries if more samples can be acquired and made available for taxonomic research.

Tatyana Yakovlevna Serebryakova: a forgotten hemp expert

Tatyana Yakovlevna Serebryakova (1893-?) conducted taxonomic research on Cannabis sativa L. for 20 years. She published important papers and a book on the subject. Next to every great man stands a great woman, and Serebryakova was Vavilov’s hemp expert. Yet her biography has never been written, and many details are lost. We have reconstructed her history based on historical archives, her publications, and her-barium specimen labels. Highlights of her scientific contributions are presented.

R&D Spending in the Energy Sector and Achieving the Goal of Climate Neutrality

Research and development (R&D) spending in the energy sector, which is aimed at exploring ways to reduce greenhouse gas emissions, among other things, plays a vital role in achieving the goal of climate neutrality. The purpose of this paper is to assess the environmental performance of R&D spending in the energy sector of selected EU member states from 2011–2017/2019, and to compare the results. Taxonomic research with the zero unitarization method was used, which enabled a synthetic assessment of EU countries according to the environmental performance of the total spending in the energy sector and an analysis of the changes in performance for six categories of spending in this area. The assessment of changes in the environmental performance of individual categories of R&D spending over time using the applied method was an added value compared with the assessment methods previously used in this area. The study found that there were significant differences in the level of environmental efficiency of R&D expenditures in the energy sector between countries, changes in environmental efficiency in most of the countries studied were not satisfactory, the most environmentally efficient expenditures were on renewable energy, other power and storage, hydro and fuel cell technologies, and the least on fossil fuels and nuclear energy. The results reflected both the member states’ progress towards climate neutrality and the discussion on the environmental performance of the means and directions of actions aimed at this.

The role of phylogeny and ecological opportunity in host-parasite interactions: network metrics, host repertoire, and network link prediction.

Hosts and parasites have often intimate associations. Therefore, the evolution of their interactions is crucial for understanding species-rich host-parasite communities. Yet relatively few studies investigate eco-evolutionary feedbacks in these systems as large datasets remain scarce. Here, we explore African cichlid fishes and their flatworm gill parasites (Cichlidogyrus spp.) including 9901 reported infections and 473 different host-parasite combinations collected through a survey of peer-reviewed literature. We apply network metrics, estimate host repertoires, and use network link prediction (NLP) algorithms to investigate meta-community structures and their predictors including evolutionary, ecological, and morphological parameters. Host repertoire was mostly determined by the hosts’ evolutionary history. Both ecological and evolutionary parameters predicted host parasite associations but many interactions remain undetected according to NLP. We conclude that ecological opportunity paired with ecological fitting has shaped interactions. The cichlid-Cichlidogyrus network is a suitable study system for eco-evolutionary feedbacks but taxonomic research remains key to finding undetected interactions.

Cytotoxicity, antimicrobial and antioxidant activities of mosses obtained from open habitats

Mosses are mainly the object of ecological and taxonomic research. This group of plants are still underestimated by scientists in other aspects of research. Recent research has shown that these plants contain remarkable and unique substances with high biological activity. Five species of mosses from a large urban ecosystem were identified for present study. In order to determine their biological potential, multifaceted studies were carried out, including: total phenolics content, antioxidant activity, antimicrobial and antifungal study, cytotoxicity evaluation, and scratch assay to assess pro-regenerative effect in the context of their possible use as the ingredients of biologically active cosmetics. Additionally, determination of individual phenolic compounds in selected extracts of the tested mosses was made. Research showed that Ceratodon purpureus and Dryptodon pulvinatus extracts had the greatest potential as antioxidants and antimicrobial activity. The cytotoxicity assessment indicated that the extracts from Dryptodon pulvinatus and Rhytidiadelphus squarossus exerted the strongest negative effect on mouse fibroblast line L929 viability at higher concentrations. While, the extract from Tortulla muralis best stimulated human foreskin fibroblast line HFF-1 proliferation and wound healing. The research on individual phenolic compounds content in the extracts tested indicated over 20 peaks on UPLC chromatograms. The conducted study has shown that mosses, especially so far unexplored species of open ecosystems, and e.g. epilytic habitats, may be a valuable source of biologically active substances and thus may constitute important medical and cosmetic possibilities.

Evaluating artisanal fishing of globally threatened sharks and rays in the Bay of Bengal, Bangladesh

Sharks and rays are at risk of extinction globally. This reflects low resilience to increasing fishing pressure, exacerbated by habitat loss, climate change, increasing value in a trade and inadequate information leading to limited conservation actions. Artisanal fisheries in the Bay of Bengal of Bangladesh contribute to the high levels of global fishing pressure on elasmobranchs. However, it is one of the most data-poor regions of the world, and the diversity, occurrence and conservation needs of elasmobranchs in this region have not been adequately assessed. This study evaluated elasmobranch diversity, species composition, catch and trade within the artisanal fisheries to address this critical knowledge gap. Findings show that elasmobranch diversity in Bangladesh has previously been underestimated. In this study, over 160000 individual elasmobranchs were recorded through landing site monitoring, comprising 88 species (30 sharks and 58 rays) within 20 families and 35 genera. Of these, 54 are globally threatened according to the IUCN Red List of Threatened Species, with ten species listed as Critically Endangered and 22 species listed as Endangered. Almost 98% juvenile catch (69–99% for different species) for large species sand a decline in numbers of large individuals were documented, indicating unsustainable fisheries. Several previously common species were rarely landed, indicating potential population declines. The catch pattern showed seasonality and, in some cases, gear specificity. Overall, Bangladesh was found to be a significant contributor to shark and ray catches and trade in the Bay of Bengal region. Effective monitoring was not observed at the landing sites or processing centres, despite 29 species of elasmobranchs being protected by law, many of which were frequently landed. On this basis, a series of recommendations were provided for improving the conservation status of the elasmobranchs in this region. These include the need for improved taxonomic research, enhanced monitoring of elasmobranch stocks, and the highest protection level for threatened taxa. Alongside political will, enhancing national capacity to manage and rebuild elasmobranch stocks, coordinated regional management measures are essential.

Algorithms for connecting scientific names with literature in the Biodiversity Heritage Library via the Global Names Project and Catalogue of Life

Being able to quickly find and access original species descriptions is essential for efficiently conducting taxonomic research. Linking scientific name queries to the original species description is challenging and requires taxonomic intelligence because on average there are an estimated three scientific names associated with each currently accepted species, and many historical scientific names have fallen into disuse from being synonymized or forgotten. Additionally, non-standard usage of journal abbreviations can make it difficult to automatically disambiguate bibliographic citations and ascribe them to the correct publication. The largest open access resource for biodiversity literature is the Biodiversity Heritage Library (BHL), which was built by a consortium of natural history institutions and contains over 200,000 digitized volumes of natural history publications spanning hundreds of years of biological research. Catalogue of Life (CoL) is the largest aggregator of scientific names globally, publishing an annual checklist of currently accepted scientific names and their historical synonyms. TaxonWorks is an integrative web-based workbench that facilitates collaboration on biodiversity informatics research between scientists and developers. The Global Names project has been collaborating with BHL, TaxonWorks, and CoL to develop a Global Names Index that links all of these services together by finding scientific names in BHL and using the taxonomic intelligence provided by CoL to conveniently link directly to the page referenced in BHL. The Global Names Index is continuously updated as metadata is improved and digitization technologies advance to provide more accurate optical character recognition (OCR) of scanned texts. We developed an open source tool, “BHLnames,” and launched a restful application programming interface (API) service with a freely available Javascript widget that can be embedded on any website to link scientific names to literature citations in BHL. If no bibliographic citation is provided, the widget will link to the oldest name usage in BHL, which often is the original species description. The BHLnames widget can also be used to browse all mentions of a scientific name and its synonyms in BHL, which could make the tool more broadly useful for studying the natural history of any species.

New records of elasmobranchs in the Bay of Bengal, Bangladesh: further taxonomic research is essential

To evaluate the species diversity and strengthen the taxonomic identification of elasmobranchs in the Bay of Bengal, Bangladesh, a study was conducted in the southeast coastal region between January 2016 and March 2018. Using morphological and genetic identification techniques, this study presents 22 species from the region. Thirteen of these are new records. The new records consist of eight species from the family Dasyatidae, and one each from Mobulidae, Rhinobatidae, Narcinidae, Hemiscylliidae and Triakidae. Furthermore, four occurrences are first verified reports, and five are potential new records requiring further taxonomic investigation.

Flavobacterium franklandianum sp. nov. and Flavobacterium gawalongense sp. nov., isolated from glaciers on the Tibetan Plateau

The genus Flavobacterium (family Flavobacteriaceae ) can be found in diverse environments. In this study, seven novel strains were isolated from glaciers in PR China and subjected to taxonomic research. Phylogenetic analyses based on the 16S rRNA gene revealed that the strains belonged to the genus Flavobacterium . None of the seven strains grew at temperatures above 22 °C, indicating that they are psychrophilic. Furthermore, the average nucleotide identity (ANI) values of the seven strains were calculated and indicated that they represented two novel species in Flavobacterium . Strain LB3P56T was most closely related to Flavobacterium soyangense IMCC26223T (97.70 %) and strain GSP16T was most closely related to Flavobacterium sinopsychrotolerans 0533T (98.03 %). The ANI values between the two Flavobacterium strains and their closest relatives were less than 83.47 %, which was much lower than the threshold for species delineation of 95–96 %. Therefore, we propose two novel species, Flavobacterium franklandianum sp. nov. (LB3P56T=CGMCC 1.11934T=NBRC 113651T) and Flavobacterium gawalongense sp. nov. (GSP16T=CGMCC 1.24642T=NBRC 113664T).

Research in Boraginaceae: A new variety of Cryptantha maritima, Cryptantha pondii resurrected, and Johnstonella echinosepala transferred back to Cryptantha

A review of the species Cryptantha maritima (Boraginaceae) supports the continued recognition of the three varieties, these differing in corolla size, ovule and nutlet number, and calyx vestiture. Mapping of these taxa from verified specimens demonstrates some geographic trends, but also some overlap in ranges. In the process of our study, we discovered a new taxonomic entity. Cryptantha maritima var. vizcainensis is described as new. This variety is restricted to the Vizcaíno Desert of Baja California Sur, Mexico and should be considered rare, as it is known to date from only eleven collections. It differs from the other three varieties of the species in having a canescent, appressed-strigose stem vestiture lacking spreading trichomes, in having a relatively large corolla, and in having a fruit derived from two 1-ovuled ovary lobes, developing into two heteromorphic nutlets. We also discovered that the species Cryptantha pondii, previously treated as a synonym of C. patula, should be resurrected as a distinct taxon. Cryptantha pondii is restricted to the western Vizcaíno Desert and to Natividad Island of Baja California Sur. It is morphologically distinctive in having bracteate flowers, relatively large corollas, and four smooth nutlets heteromorphic by size. It is to date known from only three collections and should be considered extremely rare. We also reviewed the morphological and phylogenetic status of Johnstonella echinosepala. This taxon shows similarities to Cryptantha maritima and also exhibits some morphological discontinuity between Pacific and Gulf populations in Baja California Sur. Evidence from both morphological and phylogenetic studies supports the transfer of this species from the genus Johnstonella back to the genus Cryptantha. Finally, we propose that both C. pondii and C. echinosepala are likely close relatives of C. maritima, all of the “Maritimae clade,” a group distantly related to the main core of the genus Cryptantha. This study confirms the great importance of studying herbarium specimens in taxonomic research.