Microbiological services delivered by the pig gut microbiome

The gut microbiome plays a fundamental role in regulating pig health and growth. Understanding the functions performed by the microbiome is vital when considering it as a target to improve pig health and growth, a pursuit driven by the increasing regulation of traditional means of disease control and growth promotion. This chapter explores the structure, diversity and functions of the pig gut microbiome, focusing on the role of the resident bacterial communities. It examines their relationships, interactions, and contributions to the host, ranging from the production of antimicrobial substances and prevention of pathogen colonisation to improvement of nutrient digestibility and the production of volatile fatty acids (VFAs) and vitamins. The chapter also reviews bacterial communication and the antibiotic resistome of the pig gut, outlining how they may be targeted/manipulated to reduce antibiotic resistance and promote improved gut health.

Glycosylated Coumarins, Flavonoids, Lignans and Phenylpropanoids from Wikstroemia nutans and Their Biological Activities

Wikstroemia nutans Champ. ex Benth., a traditional herbal medicine collected at the Lingnan region of China, was chemically investigated. A new bis-coumarin glucoside, wikstronutin (1), along with three known bis- and tri-coumarin glucosides (2–4), two flavonoid glycosides (5–6), and eleven lignan glucosides (7–17) were isolated from the stems and roots of W. nutans. The new structure including its absolute configuration was elucidated based on a combination of 1D- and 2D-NMR, UV, IR, HRESIMS spectroscopic data, as well as chemical transformation. Compounds (1–17) were first isolated from the plant species W. nutans, while compounds 1–3, 8, and 11 was reported from the genus Wikstroemia for the first time. All co-isolates were evaluated for their in vitro inhibitory effects on nitric oxide (NO) production induced by lipopolysaccharide (LPS) in murine RAW264.7 macrophage cells. The antibacterial activity of the selected compounds was also tested. Our work enriches the structure diversity of the secondary metabolites from the genus Wikstroemia.

Towards a better understanding of the bacterial pan-genome

The bacterial pan-genome is a relatively new concept that refers to the number of genes observed in a given set of bacterial genome sequences, either at the intra- or inter-species level. Determining the pan-genome of a given species of bacteria using a large number of strains allows one to compare multiple genes and to determine evolutionary links between isolates. This information can help to determine population structure, diversity in terms of prevalence in a given environment and pathogenicity of microorganisms. Within this review, we explain the most important issues related to pan-genome studies. We also include a brief description of some selected bacterial pan-genomes. Finally, we propose an easy-toperform workflow to study bacterial pan-genomes that will facilitate nonexperts in a pan-genome-based investigation.

Metagenomic Analysis of Suansun, a Traditional Chinese Unsalted Fermented Food

Suansun, made from fresh bamboo shoots fermented without salt, is a traditional food in China’s southern region and is popular for its nutritious and unique flavor. To comprehensively understand the microbial species and characteristics of suansun, Illumina HiSeq metagenomic sequencing technology was used to sequence suansun’s fermentation broth obtained from six traditional producing areas in southern China, and the microbial community structure, diversity, and functional genes were analyzed. A total of 8 phyla, 16 classes, 30 orders, 63 families, 92 genera, and 156 species of microorganisms were identified in the suansun samples, with Lactiplantibacillus predominating, accounting for up to 81% of the species, among which 12 species, including Lactiplantibacillus plantarum, were the main species. A total of 12,751 unigenes were annotated to 385 metabolic pathway classes, of which 2927 unigenes were involved in carbohydrate metabolism. Lactiplantibacillus fermentum, Lactiplantibacillus plantarum, and Lactiplantibacillus brucei were involved in the metabolism of most nutrients and flavor substances in suansun. Overall, these results provide insights into the suansun microbiota and shed light on the fermentation processes carried out by complex microbial communities.

Tree - Open Grassland Mosaics Drive the Herbaceous Structure and Diversity in Mediterranean Holm Oak Meadows

Background: Mediterranean holm oak meadows are semi‑natural savannah‑like agroecosystems that result from traditional silvo‑pastoral practices, which shaped these systems into a mosaic of trees and open grassland. However, traditional silvo-pastoral uses are declining with the implications that this may have on the herbaceous layer, a very biodiverse and valuable resource of these systems. Here, we aim at assessing the influence of the tree – open grassland mosaic on the structure, diversity, and composition of the herbaceous layer. Specifically, assessing the canopy effect (a) under representative Iberian canopy types, considering traditional Quercus species stands and Pinus pinea plantations at different locations; and (b) along seasonality. Results: The different components of the herbaceous layer performed differential responses to the presence/absence of tree canopies, as for instance shows the dominance of grasses under the canopy, while legumes and forbs were favoured in the open grassland. Also, there was a certain a reduction in the species richness in P. pinea dominated plots compared to plots dominated by Quercus species. There was a reduction of the aboveground biomass under the canopy at the more environmentally constrained location. Such canopy effects were generally more pronounced in spring that in autumn.Conclusion: It is highly advisable preserve the tree – open grassland mosaic and traditional Quercus species stands to maximize and preserve plant specific and functional diversity. The the optimum tree coverage might be dependent, not only on the primary ecosystem service (i. e. forage provision), but also on local conditions.