Genetic structure of island populations of Prunus lannesiana var. speciosa revealed by chloroplast DNA, AFLP and nuclear SSR loci analyses

2010 ◽  
Vol 124 (1) ◽  
pp. 11-23 ◽  
Author(s):  
Shuri Kato ◽  
Hiroyoshi Iwata ◽  
Yoshihiko Tsumura ◽  
Yuzuru Mukai
Keyword(s):  
Genetic Structure ◽  
Chloroplast Dna ◽  
Island Populations ◽  
Ssr Loci ◽  
Nuclear Ssr

scholarly journals How the Virtual Thinning Can Help to Control the Changing of Genetic Structure in Scots Pine Stands?

2020 ◽  
Vol 3 (1) ◽  
pp. 31
Author(s):  
Agata Konecka ◽  
Anna Tereba ◽  
Marcin Studnicki ◽  
Włodzimierz Buraczyk ◽  
Henryk Szeligowski ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Scots Pine ◽  
Gene Pool ◽  
Stand Structure ◽  
Real Life ◽  
Selection Cutting ◽  
Ssr Loci ◽  
Nuclear Ssr ◽  
Chloroplast Ssr ◽  
Forest District

The work detailed here in the context of the above project sought to determine changes in the gene pool (at the DNA level) in a stand of Scots pine (Pinus sylvestris L.), under the influence of various kinds of forest-tending cuts. The experimental area on which the research was focused is located in Poland’s Ostrów Mazowiecka Forest District. Genetic structure was specified using five nuclear SSR sequences and six chloroplast SSR loci, while the five thinning variants trialled were sanitation cutting, low thinning of 30% intensity, schematic thinning, selective thinning and destructive lumbering. The control variant was left untreated. It was virtual rather than real-life thinning that was pursued, using the ForestSimulator BWINPro program. Changes in the structure of the stand after a further 10 years were also simulated. The different thinning variants were shown to cause change in the gene pool and level of genetic diversity of trees in the study area. In terms of maintaining genetic variability in the stand, the least-favourable method proved to be thinning from below. Destructive selection cutting was in turn most beneficial in terms of the preservation of genetic structure, with the reduction in rare alleles being more limited than in any other analysed variant. It was with the selective thinning variant that the final number of trees, stand structure and level of genetic variation resembled the situation in the control most closely. This suggests that selective thinning provides for a rather accurate replication of processes occurring in nature.

scholarly journals Territorial distribution alleles of SSR-loci of chloroplast DNA of scots pine (Pinus sylvestris L.) in Belarus

2021 ◽  
Vol 65 (1) ◽  
pp. 87-95
Author(s):  
V. E. Padutov ◽  
D. I. Каgаn ◽  
S. I. Ivanovskaya ◽  
O. Yu. Baranov ◽  
O. A. Razumova
Keyword(s):  
Genetic Structure ◽  
Pinus Sylvestris ◽  
Chloroplast Dna ◽  
Molecular Genetic Analysis ◽  
Point Of View ◽  
Limited Area ◽  
Frequency Of Occurrence ◽  
Scotch Pine ◽  
Allelic Variants ◽  
Ssr Loci

Scotch pine (Pinus sylvestris L.) is one of the main forest forming species in Belarus, which cover 49.2 % of the country’s forested area. The aim of the study was to investigate spatial distribution of microsatellite (SSR) alleles (chloroplast DNA) and identify the features of the genetic structure and genogeographic differentiation of P. sylvestris populations in Belarus. Molecular genetic analysis of six SSR loci of Scotch pine cpDNA in samples form 73 naturally originated stands was carried out. 35 allelic variants of loci PCP1289, PCP4507, PCP83314, PCP71987, PCP26106, PCP30277 were identified. The analysis of the geographic distribution of the dominant allelic variants showed that the population structure of the pine forest is rather homogeneous. Certain regional differences in a number of cases were found for less common, but also widespread variants. One group of alleles is characterized by an increase or decrease in the frequency of occurrence in the direction from the southwest to the northeast. Another group includes allelic variants which share is maximal in the zone covering the Grodno region, the southwestern part of the Minsk region and the Gomel region, while to southwest and to northeast from this zone their frequency of occurrence decreases or is absent. A number of alleles were found only in one of the analyzed stands or in a limited area, which may indicate their local origin as a result of spontaneous mutations. The obtained results are important both from a general biological point of view in studying the evolution and formation of the genetic structure of P. sylvestris in Belarus, and from a practical point of view, since they allow to improve the forest seed zoning of the species.

The spatial genetic structure of bank vole (Myodes glareolus) and yellow-necked mouse (Apodemus flavicollis) populations: The effect of distance and habitat barriers

2009 ◽  
Vol 59 (2) ◽  
pp. 169-187 ◽  
Author(s):  
Michal Kozakiewicz ◽  
Alicja Gryczyńska–Siemiątkowska ◽  
Hanna Panagiotopoulou ◽  
Anna Kozakiewicz ◽  
Robert Rutkowski ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Bank Vole ◽  
Microsatellite Loci ◽  
Myodes Glareolus ◽  
Apodemus Flavicollis ◽  
Island Populations ◽  
Local Populations ◽  
Bank Vole Myodes Glareolus ◽  
Yellow Necked Mouse

AbstractHabitat barriers are considered to be an important factor causing the local reduction of genetic diversity by dividing a population into smaller sections and preventing gene flow between them. However, the “barrier effect” might be different in the case of different species. The effect of geographic distance and water barriers on the genetic structure of populations of two common rodent species – the yellow-necked mouse (Apodemus flavicollis) and the bank vole (Myodes glareolus) living in the area of a lake (on its islands and on two opposite shores) was investigated with the use of microsatellite fragment analysis. The two studied species are characterised by similar habitat requirements, but differ with regard to the socio-spatial structure of the population, individual mobility, capability to cross environmental barriers, and other factors. Trapping was performed for two years in spring and autumn in north-eastern Poland (21°E, 53°N). A total of 160 yellow-necked mouse individuals (7 microsatellite loci) and 346 bank vole individuals (9 microsatellite loci) were analysed. The results of the differentiation analyses (FST and RST) have shown that both the barrier which is formed by a ca. 300 m wide belt of water (between the island and the mainland) and the actual distance of approximately 10 km in continuous populations are sufficient to create genetic differentiation within both species. The differences between local populations living on opposite lake shores are the smallest; differences between any one of them and the island populations are more distinct. All of the genetic diversity indices (the mean number of alleles, mean allelic richness, as well as the observed and expected heterozygosity) of the local populations from the lakeshores were significantly higher than of the small island populations of these two species separated by the water barrier. The more profound “isolation effect” in the case of the island populations of the bank vole, in comparison to the yellow-necked mouse populations, seems to result not only from the lower mobility of the bank vole species, but may also be attributed to other differences in the animals' behaviour.

scholarly journals Population genetic structure of pedunculate oak (Quercus robur L.) in Belarus according to the analysis of chloroplast DNA

2021 ◽  
pp. 59-70
Author(s):  
Vladimir E. Padutov
Keyword(s):  
Genetic Structure ◽  
Chloroplast Dna ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Quercus Robur ◽  
Phylogenetic Trees ◽  
Rflp Analysis ◽  
Pedunculate Oak ◽  
Maximum Likelihood Methods ◽  
The Republic

Pedunculate oak (Quercus robur L.) is one of the main forest forming species in the Republic of Belarus. Its population genetic structure was formed under the influence of various migration processes. Six chloroplast DNA loci (µdt1, µdt3, µdt4, µcd4, µcd5 and µkk4) were used for the genogeographic study. The material for the analysis was collected in 100 oak forest stands (2325 samples); 18 allelic variants were identified, which are grouped into 17 different combinations (haplotypes). Five of them are widespread (the proportion of occurrence varies from 7 to 48 %, totalling 85 %). The remaining 12 are rare (the proportion of occurrence varies from 1 to 3 %, totalling 15 %). Phylogenetic trees constructed using the nearest neighbour and maximum likelihood methods show the presence of two groups (branches) of haplotypes. One of it comprises 8 variants including 2 dominant haplotypes and the other comprises 9 variants including 3 dominant haplotypes. PCR-RFLP analysis of chloroplast DNA showed that the pedunculate oak in Belarus originates from the Balkan refugium. Haplotype No. 1 (µdt189, µdt3123, µdt4142, µcd494, µcd574, µkk4109) is found almost everywhere in Belarus with the exception of the southwest and northeast, while haplotype No. 8 (µdt189, µdt3121, µdt4142, µcd494, µcd574, µkk4109) is mainly localised in the southwest and northeast. Haplotypes No. 3 (µdt189, µdt3120, µdt4141, µcd494, µcd575, µkk4109) and No. 7 (µdt189, µdt3122, µdt4142, µcd494, µcd574, µkk4109) predominantly found in the west of the country. Haplotype No. 2 (µdt190, µdt3120, µdt4141, µcd495, µcd574, µkk4109) is typical for the southeast.

Chloroplast DNA variation and genetic structure of Miscanthus sinensis in southwest China

2015 ◽  
Vol 58 ◽  
pp. 132-138 ◽  
Author(s):  
Haidong Yan ◽  
Xinquan Zhang ◽  
Chen Fu ◽  
Linkai Huang ◽  
Guohua Yin ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Chloroplast Dna ◽  
Southwest China ◽  
Miscanthus Sinensis ◽  
Dna Variation ◽  
Chloroplast Dna Variation
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