scholarly journals Transcriptome dynamics in developing leaves from C3 and C4Flaveria species reveal determinants of Kranz anatomy

2018 ◽  
Author(s):  
Kumari Billakurthi ◽  
Thomas J. Wrobel ◽  
Andrea Bräutigam ◽  
Andreas P.M. Weber ◽  
Peter Westhoff ◽  
...  

AbstractC4 species have evolved more than 60 times independently from C3 ancestors. This multiple and parallel evolution of the complex C4 trait indicates common underlying evolutionary mechanisms that might be identified by comparative analysis of closely related C3 and C4 species. Efficient C4 function depends on a distinctive leaf anatomy that is characterized by enlarged, chloroplast rich bundle sheath cells and a narrow vein spacing. To elucidate molecular mechanisms generating this so called Kranz anatomy, we analyzed a developmental series of leaves from the C4 plant Flaveria bidentis and the closely related C3 species Flaveria robusta using leaf clearing and whole transcriptome sequencing. Applying non-negative matrix factorization on the data identified four different zones with distinct transcriptome patterns in growing leaves of both species. Comparing these transcriptome patterns revealed an important role of auxin metabolism and especially auxin homeostasis for establishing the high vein density typical for C4 leaves.

Weed Science ◽  
1983 ◽  
Vol 31 (1) ◽  
pp. 131-136 ◽  
Author(s):  
C. Dennis Elmore ◽  
Rex N. Paul

Spotted spurge (Euphorbia maculataL.) and prostrate spurge (E. supinaRaf.), both in subgenusChamesyce,were examined by light and electron microscopy using a caffeine - fixation technique to sequester the phenolic pools intercellularly. Both species have typical dicotyledon-type Kranz anatomy. Sequestered phenolic pools were located in vacuoles in epidermal and mesophyll cells. Only in spotted spurge, however, were additional phenolic pools formed in bundle - sheath cells. This study was undertaken because allelopathy has been demonstrated in prostrate spurge and because phenolic compounds have been implicated in allelopathy. These results would indicate that spotted spurge should also be allelopathic.


Cells ◽  
2019 ◽  
Vol 8 (5) ◽  
pp. 461 ◽  
Author(s):  
Ludmila Trilisenko ◽  
Anton Zvonarev ◽  
Airat Valiakhmetov ◽  
Alexey A. Penin ◽  
Irina A. Eliseeva ◽  
...  

Inorganic polyphosphate (polyP) is crucial for adaptive reactions and stress response in microorganisms. A convenient model to study the role of polyP in yeast is the Saccharomyces cerevisiae strain CRN/PPN1 that overexpresses polyphosphatase Ppn1 with stably decreased polyphosphate level. In this study, we combined the whole-transcriptome sequencing, fluorescence microscopy, and polyP quantification to characterize the CRN/PPN1 response to manganese and oxidative stresses. CRN/PPN1 exhibits enhanced resistance to manganese and peroxide due to its pre-adaptive state observed in normal conditions. The pre-adaptive state is characterized by up-regulated genes involved in response to an external stimulus, plasma membrane organization, and oxidation/reduction. The transcriptome-wide data allowed the identification of particular genes crucial for overcoming the manganese excess. The key gene responsible for manganese resistance is PHO84 encoding a low-affinity manganese transporter: Strong PHO84 down-regulation in CRN/PPN1 increases manganese resistance by reduced manganese uptake. On the contrary, PHM7, the top up-regulated gene in CRN/PPN1, is also strongly up-regulated in the manganese-adapted parent strain. Phm7 is an unannotated protein, but manganese adaptation is significantly impaired in Δphm7, thus suggesting its essential function in manganese or phosphate transport.


1984 ◽  
Vol 62 (4) ◽  
pp. 812-817 ◽  
Author(s):  
Maria Emília Estelita-Teixeira ◽  
Walter Handro

Ultrastructural aspects, especially the organization of chloroplasts and their distribution, were studied in leaves of three species of Gomphrena (G. macrocephala, G. prostrata, and G. decipiens) presenting "Kranz anatomy," and in Pfaffia jubata, without that characteristic. In Gomphrena spp. the distribution of chloroplasts according to the complexity of their lamellar system seems to follow a gradient: most of the chloroplasts in the bundle sheath cells have poorly developed grana but some of them, in the cell side opposite to the vascular bundle, may present conspicuous grana. A similar situation occurs in "Kranz mesophyll cells," but in this case grana are more developed. Finally, chloroplasts in "non-Kranz mesophyll cells" have the more developed grana. In P. jubata no differences occur in chloroplast structure, all of them showing well-organized grana. Chloroplasts with well-developed grana were found in vascular parenchyma and in companion cells of Gomphrena spp. and P. jubata.


2020 ◽  
Author(s):  
Soni Chowrasia ◽  
Tapan Kumar Mondal

AbstractThe C4 cycle is a complex biochemical pathway that has been evolved in plants to deal with the adverse environmental conditions. Mostly C4 plants grow in arid, water-logged area or poor nutrient habitats. Wild species, Oryza coarctata (genome type KKLL; chromosome number (4x) =48, genome size 665 Mb) belongs to the genus of Oryza which thrives well under high saline as well as submerged conditions. Here, we report for the first time that O. coarctata is a C4 plant by observing the increased biomass growth, morphological features such as vein density, anatomical features including ultrastuctural characteristics as well as expression patterns of C4 related genes. Leaves of O. coarctata have higher vein density and possess Kranz anatomy. The ultrastructural observation showed chloroplast dimorphism i.e. presence of agranal chloroplasts in bundle sheath cells whereas, mesophyll cells contain granal chloroplasts. The cell walls of bundle sheath cells contain tangential suberin lamella. The transcript level of C4 specific genes such as phosphoenolpyruvate carboxylase, pyruvate orthophosphate dikinase, NADP-dependent malic enzyme and malate dehydrogenase was higher in leaves of O. coarctata compare to high yielding rice cultivar (IR-29). These anatomical, ultra structural as well as molecular changes in O. coarctata for C4 photosynthesis adaptation might be might be due to its survival in wide diverse condition from aquatic to saline submerged condition. Being in the genus of Oryza, this plant could be potential donor for production of C4 rice in future through conventional breeding, as successful cross with rice has already been reported.


2020 ◽  
Vol 26 (02) ◽  
pp. 2204-2010
Author(s):  
R. Ahmed ◽  
M. S. Hossain ◽  
S. M. T. Kabir ◽  
B. Ahmed ◽  
R. Hasan ◽  
...  

The demand for products made by jute fiber is increasing day-by-day for its biodegradable nature regarding environmental concerns. To gain this opportunity correctly, the development of high yielding and improved fiber quality jute variety is essential for ensuring diversified use of jute fiber. The major developed jute varieties, so far, are the outcome of conventional breeding which is a very time consuming process. Improvement of fiber quality and yield through genetic modification approach is highly desired. However, very little is known about the molecular mechanism behind fiber cell formation in jute. Here, we attempted to do the whole transcriptome sequencing of fiber cell RNA to reveal the molecular mechanisms were happening in the premises of jute fiber cells. We performed RNA isolation from jute fiber cells followed by whole transcriptome sequencing. De novo assembly of sequencing reads resulted in 21,294 contigs representing the transcriptome size of 4.07 Mbp. Gene ontology analysis assigned 14144 genes (52.21%) for biological process, 8399 genes (31%) involved in molecular function and 4549 genes (16.79%) for cellular component. Total 66 fiber related genes were found from reference based annotation where 9 genes involved in fiber cell initiation and elongation and the rest 57 for secondary cell wall development. We presented the overall view of the jute fiber cell transcriptome in this study. These findings help for understanding the molecular basis of fiber formation in jute plant.


1970 ◽  
Vol 18 ◽  
pp. 66-73 ◽  
Author(s):  
N Joarder ◽  
AK Roy ◽  
SN Sima ◽  
K Parvin

Context: Kranz anatomy of locally developed sugarcane cultivars were studied in relation to C4 vascular arrangement.   Objective: The objective of this study was to make gross cross-sectional anatomy and quantitative assessment of the anatomic traits of the leaf-blade and midrib of the sugarcane cultivars.   Materials and Methods: Leaf blade and leaf sheath of two sugarcane cultivars Ishurdi 20 and Ishurdi 32 were used as the materials. Free hand section with appropriate stain were used. Sections were studied using an advanced biological system microscope fitted with motic camera. Anatomic traits were studied through motic image plus J 1.0 software using Macintosh computer.   Results: Three sized vascular bundles and significant differences in distance between those vascular bundles were noted. Ishurdi 32 possessed two sized vascular bundles. Large vascular bundles characters by two large metaxylem vessels on either side of protoxylem. Phloem well developed. Intermediate and small bundles lack metaxylem vessels and protoxylem, but have metaphloem with thick and thin walled sieve tubes. Bundle sheaths have extended to upper and lower epidermis but for small bundle it is extended to abaxial epidermis. Vascular bundles are almost completely surrounded by chlorenchymatous bundle sheath and associated with hypodermal sclerenchyma on both abaxially and adaxially except small blade bundles which associated with the abaxial sclerenchyma. Bundle sheath cells were smaller in large and larger in other two types of vascular bundle. An inner mestome sheath with thickened walls is always present round the phloem and metaxylem around all or part of the xylem in large and intermediate bundles. In small bundles mestome sheath is altogether absent. Bulliform cells with varied area were present on the adaxial epidermis opposite to small vascular bundles. Midrib anatomy consists of central large vascular bundles lacking bundle sheath cells pushed deep inside parenchymatous hypodermis from abaxial hypodermal sclerenchyma girders. Lack of Kranz traits, and bundle sheath cells have transformed into sclerenchymatous bundle cover. Central mid-rib large bundle flanked by 3-10 small bundles on either side of midrib which have Kranz system of anatomy. Midrib region have continuous hypodermis consists of sclerenchyma cells and it is few layer (Ishurdi 32) to multilayer (Ishurdi 20).   Conclusion: Kranz system with well developed bundle sheath associated with Kranz mesophil in the leaf blade were observed but Kranz tissue absent in midrib region. Large and small vascular bundles alternate all alone the leaf blade. Bulliform cell well develop indicates zeric adaptation. Two cultivars differ in respect of quantitative expression of Kranz tissue.   Keywords: Sugarcane cultivar; Kranz tissue; bulliform cells; mestome sheath. DOI: http://dx.doi.org/10.3329/jbs.v18i0.8778 JBS 2010; 18(0): 66-73


2021 ◽  
Vol 12 ◽  
Author(s):  
Rana Salihoğlu ◽  
Tuğba Önal-Süzek

In recent years, a substantial number of tissue microbiome studies have been published, mainly due to the recent improvements in the minimization of microbial contamination during whole transcriptome analysis. Another reason for this trend is due to the capability of next-generation sequencing (NGS) to detect microbiome composition even in low biomass samples. Several recent studies demonstrate a significant role for the tissue microbiome in the development and progression of cancer and other diseases. For example, the increase of the abundance of Proteobacteria in tumor tissues of the breast has been revealed by gene expression analysis. The link between human papillomavirus infection and cervical cancer has been known for some time, but the relationship between the microbiome and breast cancer (BC) is more novel. There are also recent attempts to investigate the possible link between the brain microbiome and the cognitive dysfunction caused by neurological diseases. Such studies pointing to the role of the brain microbiome in Huntington’s disease (HD) and Alzheimer’s disease (AD) suggest that microbial colonization is a risk factor. In this review, we aim to summarize the studies that associate the tissue microbiome, rather than gut microbiome, with cancer and other diseases using whole-transcriptome analysis, along with 16S rRNA analysis. After providing several case studies for each relationship, we will discuss the potential role of transcriptome analysis on the broader portrayal of the pathophysiology of the breast, brain, and vaginal microbiome.


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