scholarly journals Transcriptomic studies reveal a key metabolic pathway contributing to a well-maintained photosynthetic system under drought stress in foxtail millet (Setaria italica L.)

2018 ◽  
Author(s):  
Weiping Shi ◽  
Jingye Cheng ◽  
Xiaojie Wen ◽  
Jixiang Wang ◽  
Guanyan Shi ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Stress Responses ◽  
Molecular Mechanisms ◽  
Abiotic Factors ◽  
Chlorophyll Biosynthesis ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Parental Lines

Drought stress is one of the most important abiotic factors limiting crop productivity. A better understanding of the effects of drought on millet (Setaria italica L.) production, a model crop for studying drought tolerance, and the underlying molecular mechanisms responsible for drought stress responses is vital to improvement of agricultural production. In this study, we exposed the drought resistant F1 hybrid, M79, and its parental lines E1 and H1 to drought stress. Subsequent physiological analysis demonstrated that M79 showed higher photosynthetic energy conversion efficiency and drought tolerance than its parents. A transcriptomic study using leaves collected six days after drought treatment, when the soil water content was about ~20%, identified 3066, 1895, and 2148 differentially expressed genes (DEGs) in M79, E1 and H1 compared to the respective untreated controls, respectively. Further analysis revealed 17 Gene Ontology (GO) enrichments and 14 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways in M79, including photosystem II (PSII) oxygen-evolving complex, peroxidase (POD) activity, plant hormone signal transduction, and chlorophyll biosynthesis. Co-regulation analysis suggested that these DEGs in M79 contributed to the formation of a regulatory network involving multiple biological processes and pathways including photosynthesis, signal transduction, transcriptional regulation, redox regulation, hormonal signaling, and osmotic regulation. RNA-seq analysis also showed that some photosynthesis-related DEGs were highly expressed in M79 compared to its parental lines under drought stress. These results indicate that various molecular pathways, including photosynthesis, respond to drought stress in M79, and provide abundant molecular information for further analysis of the underlying mechanism responding to this stress.

scholarly journals Transcriptomic studies reveal a key metabolic pathway contributing to a well-maintained photosynthetic system under drought stress in foxtail millet (Setaria italica L.)

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4752 ◽  
Author(s):  
Weiping Shi ◽  
Jingye Cheng ◽  
Xiaojie Wen ◽  
Jixiang Wang ◽  
Guanyan Shi ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Stress Responses ◽  
Molecular Mechanisms ◽  
Abiotic Factors ◽  
Chlorophyll Biosynthesis ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Parental Lines

Drought stress is one of the most important abiotic factors limiting crop productivity. A better understanding of the effects of drought on millet (Setaria italica L.) production, a model crop for studying drought tolerance, and the underlying molecular mechanisms responsible for drought stress responses is vital to improvement of agricultural production. In this study, we exposed the drought resistant F1 hybrid, M79, and its parental lines E1 and H1 to drought stress. Subsequent physiological analysis demonstrated that M79 showed higher photosynthetic energy conversion efficiency and drought tolerance than its parents. A transcriptomic study using leaves collected six days after drought treatment, when the soil water content was about ∼20%, identified 3066, 1895, and 2148 differentially expressed genes (DEGs) in M79, E1 and H1 compared to the respective untreated controls, respectively. Further analysis revealed 17 Gene Ontology (GO) enrichments and 14 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways in M79, including photosystem II (PSII) oxygen-evolving complex, peroxidase (POD) activity, plant hormone signal transduction, and chlorophyll biosynthesis. Co-regulation analysis suggested that these DEGs in M79 contributed to the formation of a regulatory network involving multiple biological processes and pathways including photosynthesis, signal transduction, transcriptional regulation, redox regulation, hormonal signaling, and osmotic regulation. RNA-seq analysis also showed that some photosynthesis-related DEGs were highly expressed in M79 compared to its parental lines under drought stress. These results indicate that various molecular pathways, including photosynthesis, respond to drought stress in M79, and provide abundant molecular information for further analysis of the underlying mechanism responding to this stress.

scholarly journals Transcriptomic studies reveal a key metabolic pathway contributing to a well-maintained photosynthetic system under drought stress in foxtail millet (Setaria italica L.)

2018 ◽  
Author(s):  
Weiping Shi ◽  
Jingye Cheng ◽  
Xiaojie Wen ◽  
Jixiang Wang ◽  
Guanyan Shi ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Stress Responses ◽  
Molecular Mechanisms ◽  
Abiotic Factors ◽  
Chlorophyll Biosynthesis ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Parental Lines

Drought stress is one of the most important abiotic factors limiting crop productivity. A better understanding of the effects of drought on millet (Setaria italica L.) production, a model crop for studying drought tolerance, and the underlying molecular mechanisms responsible for drought stress responses is vital to improvement of agricultural production. In this study, we exposed the drought resistant F1 hybrid, M79, and its parental lines E1 and H1 to drought stress. Subsequent physiological analysis demonstrated that M79 showed higher photosynthetic energy conversion efficiency and drought tolerance than its parents. A transcriptomic study using leaves collected six days after drought treatment, when the soil water content was about ~20%, identified 3066, 1895, and 2148 differentially expressed genes (DEGs) in M79, E1 and H1 compared to the respective untreated controls, respectively. Further analysis revealed 17 Gene Ontology (GO) enrichments and 14 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways in M79, including photosystem II (PSII) oxygen-evolving complex, peroxidase (POD) activity, plant hormone signal transduction, and chlorophyll biosynthesis. Co-regulation analysis suggested that these DEGs in M79 contributed to the formation of a regulatory network involving multiple biological processes and pathways including photosynthesis, signal transduction, transcriptional regulation, redox regulation, hormonal signaling, and osmotic regulation. RNA-seq analysis also showed that some photosynthesis-related DEGs were highly expressed in M79 compared to its parental lines under drought stress. These results indicate that various molecular pathways, including photosynthesis, respond to drought stress in M79, and provide abundant molecular information for further analysis of the underlying mechanism responding to this stress.

scholarly journals Genome-Wide Gene Expression Profiles Analysis Reveal Novel Insights into Drought Stress in Foxtail Millet (Setaria italica L.)

2020 ◽  
Vol 21 (22) ◽  
pp. 8520
Author(s):  
Ling Qin ◽  
Erying Chen ◽  
Feifei Li ◽  
Xiao Yu ◽  
Zhenyu Liu ◽  
...  
Keyword(s):  
Gene Expression ◽  
Signal Transduction ◽  
Drought Stress ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Foxtail Millet ◽  
Gene Expression Profiles ◽  
Sugar Metabolism ◽  
Setaria Italica ◽  
Phenylpropanoid Biosynthesis

Foxtail millet (Setaria italica (L.) P. Beauv) is an important food and forage crop because of its health benefits and adaptation to drought stress; however, reports of transcriptomic analysis of genes responding to re-watering after drought stress in foxtail millet are rare. The present study evaluated physiological parameters, such as proline content, p5cs enzyme activity, anti-oxidation enzyme activities, and investigated gene expression patterns using RNA sequencing of the drought-tolerant foxtail millet variety (Jigu 16) treated with drought stress and rehydration. The results indicated that drought stress-responsive genes were related to many multiple metabolic processes, such as photosynthesis, signal transduction, phenylpropanoid biosynthesis, starch and sucrose metabolism, and osmotic adjustment. Furthermore, the Δ1-pyrroline-5-carboxylate synthetase genes, SiP5CS1 and SiP5CS2, were remarkably upregulated in foxtail millet under drought stress conditions. Foxtail millet can also recover well on rehydration after drought stress through gene regulation. Our data demonstrate that recovery on rehydration primarily involves proline metabolism, sugar metabolism, hormone signal transduction, water transport, and detoxification, plus reversal of the expression direction of most drought-responsive genes. Our results provided a detailed description of the comparative transcriptome response of foxtail millet variety Jigu 16 under drought and rehydration environments. Furthermore, we identify SiP5CS2 as an important gene likely involved in the drought tolerance of foxtail millet.

scholarly journals Comparative Proteomic and Morpho-Physiological Analyses of Maize Wild-Type Vp16 and Mutant vp16 Germinating Seed Responses to PEG-Induced Drought Stress

2019 ◽  
Vol 20 (22) ◽  
pp. 5586 ◽  
Author(s):  
Songtao Liu ◽  
Tinashe Zenda ◽  
Anyi Dong ◽  
Yatong Yang ◽  
Xinyue Liu ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Stress Responses ◽  
Molecular Mechanisms ◽  
Crop Improvement ◽  
Pentose Phosphate ◽  
Glutathione Metabolism ◽  
Abiotic Factor ◽  
Wild Type ◽  
Proteomics Analysis

Drought stress is a major abiotic factor compromising plant cell physiological and molecular events, consequently limiting crop growth and productivity. Maize (Zea mays L.) is among the most drought-susceptible food crops. Therefore, understanding the mechanisms underlying drought-stress responses remains critical for crop improvement. To decipher the molecular mechanisms underpinning maize drought tolerance, here, we used a comparative morpho-physiological and proteomics analysis approach to monitor the changes in germinating seeds of two incongruent (drought-sensitive wild-type Vp16 and drought-tolerant mutant vp16) lines exposed to polyethylene-glycol-induced drought stress for seven days. Our physiological analysis showed that the tolerant line mutant vp16 exhibited better osmotic stress endurance owing to its improved reactive oxygen species scavenging competency and robust osmotic adjustment as a result of greater cell water retention and enhanced cell membrane stability. Proteomics analysis identified a total of 1200 proteins to be differentially accumulated under drought stress. These identified proteins were mainly involved in carbohydrate and energy metabolism, histone H2A-mediated epigenetic regulation, protein synthesis, signal transduction, redox homeostasis and stress-response processes; with carbon metabolism, pentose phosphate and glutathione metabolism pathways being prominent under stress conditions. Interestingly, significant congruence (R2 = 81.5%) between protein and transcript levels was observed by qRT-PCR validation experiments. Finally, we propose a hypothetical model for maize germinating-seed drought tolerance based on our key findings identified herein. Overall, our study offers insights into the overall mechanisms underpinning drought-stress tolerance and provides essential leads into further functional validation of the identified drought-responsive proteins in maize.

scholarly journals Global Transcriptome and Weighted Gene Co-expression Network Analyses of Growth-Stage-Specific Drought Stress Responses in Maize

2021 ◽  
Vol 12 ◽  
Author(s):  
Songtao Liu ◽  
Tinashe Zenda ◽  
Anyi Dong ◽  
Yatong Yang ◽  
Nan Wang ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Transcriptome Analysis ◽  
Stress Responses ◽  
Growth Stage ◽  
Molecular Mechanisms ◽  
Grain Filling ◽  
Growth Stages ◽  
Specific Response ◽  
Network Analyses

Drought is the major abiotic stress threatening maize (Zea mays L.) production globally. Despite recent scientific headway in deciphering maize drought stress responses, the overall picture of key genes, pathways, and co-expression networks regulating maize drought tolerance is still fragmented. Therefore, deciphering the molecular basis of maize drought tolerance remains pertinent. Here, through a comprehensive comparative leaf transcriptome analysis of drought-tolerant hybrid ND476 plants subjected to water-sufficient and water-deficit treatment conditions at flared (V12), tasseling (VT), the prophase of grain filling (R2), and the anaphase of grain filling (R4) crop growth stages, we report growth-stage-specific molecular mechanisms regulating maize drought stress responses. Based on the transcriptome analysis, a total of 3,451 differentially expressed genes (DEGs) were identified from the four experimental comparisons, with 2,403, 650, 397, and 313 DEGs observed at the V12, VT, R1, and R4 stages, respectively. Subsequently, 3,451 DEGs were divided into 12 modules by weighted gene co-expression network analysis (WGCNA), comprising 277 hub genes. Interestingly, the co-expressed genes that clustered into similar modules exhibited diverse expression tendencies and got annotated to different GO terms at different stages. MapMan analysis revealed that DEGs related to stress signal transduction, detoxification, transcription factor regulation, hormone signaling, and secondary metabolites biosynthesis were universal across the four growth stages. However, DEGs associated with photosynthesis and amino acid metabolism; protein degradation; transport; and RNA transcriptional regulation were uniquely enriched at the V12, VT, R2, and R4 stages, respectively. Our results affirmed that maize drought stress adaptation is a growth-stage-specific response process, and aid in clarifying the fundamental growth-stage-specific mechanisms regulating drought stress responses in maize. Moreover, genes and metabolic pathways identified here can serve as valuable genetic resources or selection targets for further functional validation experiments.

scholarly journals A Transcriptome Analysis Revealing the New Insight of Green Light on Tomato Plant Growth and Drought Stress Tolerance

2021 ◽  
Vol 12 ◽  
Author(s):  
Zhonghua Bian ◽  
Yu Wang ◽  
Xiaoyan Zhang ◽  
Steven Grundy ◽  
Katherine Hardy ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Plant Growth ◽  
Stress Responses ◽  
Green Light ◽  
Stomatal Aperture ◽  
Tomato Plants ◽  
Aba Signal Transduction ◽  
Aba Synthesis

Light plays a pivotal role in plant growth, development, and stress responses. Green light has been reported to enhance plant drought tolerance via stomatal regulation. However, the mechanisms of green light-induced drought tolerance in plants remain elusive. To uncover those mechanisms, we investigated the molecular responses of tomato plants under monochromatic red, blue, and green light spectrum with drought and well-water conditions using a comparative transcriptomic approach. The results showed that compared with monochromatic red and blue light treated plants, green light alleviated the drought-induced inhibition of plant growth and photosynthetic capacity, and induced lower stomatal aperture and higher ABA accumulation in tomato leaves after 9 days of drought stress. A total of 3,850 differentially expressed genes (DEGs) was identified in tomato leaves through pairwise comparisons. Functional annotations revealed that those DEGs responses to green light under drought stress were enriched in plant hormone signal transduction, phototransduction, and calcium signaling pathway. The DEGs involved in ABA synthesis and ABA signal transduction both participated in the green light-induced drought tolerance of tomato plants. Compared with ABA signal transduction, more DEGs related to ABA synthesis were detected under different light spectral treatments. The bZIP transcription factor- HY5 was found to play a vital role in green light-induced drought responses. Furthermore, other transcription factors, including WRKY46 and WRKY81 might participate in the regulation of stomatal aperture and ABA accumulation under green light. Taken together, the results of this study might expand our understanding of green light-modulated tomato drought tolerance via regulating ABA accumulation and stomatal aperture.

scholarly journals Short Communication: Evaluation of drought tolerance indices for genotype selection of foxtail millet (Setaria italica)

2018 ◽  
Vol 2 (2) ◽  
pp. 37-40 ◽  
Author(s):  
SHERLY LAPUIMAKUNI ◽  
NURUL KHUMAIDA ◽  
SINTHO WAHYUNING ARDIE ◽  
SINTHO WAHYUNING ARDIE
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Foxtail Millet ◽  
Setaria Italica ◽  
Potential Yield ◽  
Tolerance Level ◽  
Drought Tolerant ◽  
Drought Tolerance Indices ◽  
Tolerance Indices ◽  
Selection Of

Lapuimakuni S, Khumaida N, Ardie SW. 2018. Evaluation of drought tolerance indices for genotype selection of foxtail millet (Setaria italica). Trop Drylands 2: 37-40. Foxtail millet (Setaria italica (L.) Beauv) is one of underutilized crop grown for its nutritious grain and its relative tolerance to drought stress. Although foxtail millet has been reported as to be relatively tolerant to drought stress, the drought tolerance level of this crop is varied between genotypes. Thus, breeding approaches to develop drought-tolerant foxtail millet variety is of great importance. This study aimed to: (i) evaluate several drought tolerance indices to determine one or more predictors among studied indices, and (ii) identify the drought tolerance level of the evaluated foxtail millet genotypes. Eight foxtail millet genotypes were planted in a greenhouse with a completely randomized design and five replications under both drought and normal watering conditions. Staggered planting was applied to synchronize flowering time. Water was withheld for 15 days during the flowering period, and then plants were re-watered until harvest time. Multiple indices for drought tolerance were calculated based on the potential yield (Yp) under non-stress and yield (Ys) under stress conditions. Based on the correlation, principal component analysis, and cluster analysis, yield index (YI) and harmonic mean (HM) were considered the best indices for the selection of drought-tolerant foxtail millet genotypes. By using the best indices, two foxtail millet genotypes (ICERI-5 and ICERI-6) were considered as drought tolerant genotypes.

Global transcriptome and weighted gene co-expression network analyses of growth-stage-specific and hybrid-cultivar-specific drought stress responses in maize

2020 ◽  
Author(s):  
Songtao Liu ◽  
Tinashe Zenda ◽  
Hongyu Jin ◽  
Guo Liu ◽  
Xuan Wang ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Water Deficit ◽  
Transcriptome Analysis ◽  
Stress Responses ◽  
Growth Stage ◽  
Molecular Mechanisms ◽  
Growth Stages ◽  
Specific Response ◽  
Network Analyses

Abstract Background Drought is the major abiotic stress threatening maize ( Zea mays L.) production globally. Therefore, deciphering the molecular basis of maize drought tolerance remains pertinent. Results Here, through a comprehensive comparative leaf transcriptome analysis of drought-tolerant hybrid ND476 plants subjected to water-sufficient (control) and water-deficit (drought) treatment conditions at four (V12, VT, R1, and R4) crop growth stages, we report key cultivar-specific and growth-stage-specific molecular mechanisms regulating drought stress responses in maize. Based on the transcriptome analysis, a total of 3451 differentially expressed genes (DEGs) were identified from the four experimental comparisons, with 2403, 650, 397 and 313 DEGS observed at the V12, VT, R1, and R4 stages, respectively. The expression changes in these genes effected corresponding metabolic pathway responses related to drought tolerance in maize. Subsequently, 3451 DEGs were divided into 12 modules by weighted gene co-expression network analysis (WGCNA), comprising 277 hub genes covering drought-responsive genes involved in water-deficit stress and developmental signaling crosstalk. Interestingly, the co-expressed genes that clustered into similar modules exhibited diverse expression tendencies and got annotated to different GO terms at different stages. MapMan analysis revealed that DEGs related to stress signal transduction, detoxification, transcription factor regulation, hormone signaling and secondary metabolites biosynthesis were universal across the four growth stages. However, the DEGs associated with photosynthesis and amino acid metabolism; protein degradation; transport; and RNA transcriptional regulation were uniquely enriched at the V12, VT, R2, and R4 stages, respectively. Conclusions Our results affirmed that maize drought stress adaptation is a whole-plant response as well as a stage-specific response process. We hope that our findings will aid in clarifying the fundamental cultivar-specific and growth-stage-specific molecular mechanisms regulating drought stress responses in maize. In addition, the genes and metabolic pathways identified here can be valuable genetic resources or selection targets for developing new drought resistant maize cultivars.

scholarly journals Spermine: Its Emerging Role in Regulating Drought Stress Responses in Plants

Cells ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 261
Author(s):  
Md. Mahadi Hasan ◽  
Milan Skalicky ◽  
Mohammad Shah Jahan ◽  
Md. Nazmul Hossain ◽  
Zunaira Anwar ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Stress Responses ◽  
Abiotic Stresses ◽  
Defense Mechanisms ◽  
Antioxidant Defense ◽  
Severe Drought ◽  
New Information ◽  
Effects Of Drought

In recent years, research on spermine (Spm) has turned up a lot of new information about this essential polyamine, especially as it is able to counteract damage from abiotic stresses. Spm has been shown to protect plants from a variety of environmental insults, but whether it can prevent the adverse effects of drought has not yet been reported. Drought stress increases endogenous Spm in plants and exogenous application of Spm improves the plants’ ability to tolerate drought stress. Spm’s role in enhancing antioxidant defense mechanisms, glyoxalase systems, methylglyoxal (MG) detoxification, and creating tolerance for drought-induced oxidative stress is well documented in plants. However, the influences of enzyme activity and osmoregulation on Spm biosynthesis and metabolism are variable. Spm interacts with other molecules like nitric oxide (NO) and phytohormones such as abscisic acid, salicylic acid, brassinosteroids, and ethylene, to coordinate the reactions necessary for developing drought tolerance. This review focuses on the role of Spm in plants under severe drought stress. We have proposed models to explain how Spm interacts with existing defense mechanisms in plants to improve drought tolerance.

scholarly journals A Novel WRKY Transcription Factor from Ipomoea trifida, ItfWRKY70, Confers Drought Tolerance in Sweet Potato

2022 ◽  
Vol 23 (2) ◽  
pp. 686
Author(s):  
Sifan Sun ◽  
Xu Li ◽  
Shaopei Gao ◽  
Nan Nie ◽  
Huan Zhang ◽  
...  
Keyword(s):  
Drought Stress ◽  
Transgenic Plants ◽  
Drought Tolerance ◽  
Sweet Potato ◽  
Stress Responses ◽  
Leaf Tissue ◽  
Stomatal Aperture ◽  
Ros Scavenging ◽  
Ipomoea Trifida ◽  
Positive Role

WRKY transcription factors are one of the important families in plants, and have important roles in plant growth, abiotic stress responses, and defense regulation. In this study, we isolated a WRKY gene, ItfWRKY70, from the wild relative of sweet potato Ipomoea trifida (H.B.K.) G. Don. This gene was highly expressed in leaf tissue and strongly induced by 20% PEG6000 and 100 μM abscisic acid (ABA). Subcellar localization analyses indicated that ItfWRKY70 was localized in the nucleus. Overexpression of ItfWRKY70 significantly increased drought tolerance in transgenic sweet potato plants. The content of ABA and proline, and the activity of SOD and POD were significantly increased, whereas the content of malondialdehyde (MDA) and H2O2 were decreased in transgenic plants under drought stress. Overexpression of ItfWRKY70 up-regulated the genes involved in ABA biosynthesis, stress-response, ROS-scavenging system, and stomatal aperture in transgenic plants under drought stress. Taken together, these results demonstrated that ItfWRKY70 plays a positive role in drought tolerance by accumulating the content of ABA, regulating stomatal aperture and activating the ROS scavenging system in sweet potato.

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