Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions

The estimation of larval dispersal on an ecological timescale is significant for conservation of marine species. In 2018, a semi-population outbreak of crown-of-thorns sea star, Acanthaster cf. solaris, was observed on a relatively isolated oceanic island, Ogasawara. The aim of this study was to assess whether this population outbreak was caused by large-scale larval recruitment (termed secondary outbreak) from the Kuroshio region. We estimated larval dispersal of the coral predator A. cf. solaris between the Kuroshio and Ogasawara regions using both population genomic analysis and simulation of oceanographic dispersal. Population genomic analysis revealed overall genetically homogenized patterns among Ogasawara and other Japanese populations, suggesting that the origin of the populations in the two regions is the same. In contrast, a simulation of 26-year oceanographic dispersal indicated that larvae are mostly self-seeded in Ogasawara populations and have difficulty reaching Ogasawara from the Kuroshio region within one generation. However, a connectivity matrix produced by the larval dispersal simulation assuming a Markov chain indicated gradual larval dispersal migration from the Kuroshio region to Ogasawara in a stepping-stone manner over multiple years. These results suggest that the 2018 outbreak was likely the result of self-seeding, including possible inbreeding (as evidenced by clonemate analysis), as large-scale larval dispersal from the Kurishio population to the Ogasawara population within one generation is unlikely. Instead, the population in Ogasawara is basically sustained by self-seedings, and the outbreak in 2018 was also most likely caused by successful self-seedings including possible inbreeding, as evidenced by clonemate analysis. This study also highlighted the importance of using both genomic and oceanographic methods to estimate larval dispersal, which provides significant insight into larval dispersal that occurs on ecological and evolutionary timescales.

Geographic Variation of Particle Size Distribution in the Kuroshio Region: Possible Causes in the Upper Water Column

Particle size distribution (PSD) in the ocean is a fundamental property that influences carbon export and food webs; however, PSD variation and its causes in oligotrophic oceans are not entirely clear. Here, we used Laser In-Situ Scattering and Transmissometry to investigate PSD (size range 5.2–119 μm) and related variables at 11 stations in the surface layer (0–20 m) of the Kuroshio region of the western North Pacific, where strong current causes dynamic hydrographic and ecological conditions. PSD slopes (range –3.2 to –4.2), derived from the power law model, were steeper at onshore stations and flatter at oligotrophic stations located offshore and at lower latitudes. Notably, slopes tended to become steeper with increasing chlorophyll a concentration, opposing the generally observed relationship between the two variables, whereas they became flatter with increasing transparent exopolymer particle (TEP) concentration. Possible explanations of the above results are localized occurrence of nanophytoplankton and TEP facilitation of particle aggregation. The results support the hypothesis that PSD slopes are controlled by a multitude of factors, including phytoplankton community dynamics and aggregation processes. To determine whether TEP-induced particle aggregation enhances or suppresses carbon export, we need a better understanding of the nature (porosity, density, and sinking velocity) of aggregates in oligotrophic oceans.

Measuring Ocean Surface Current in the Kuroshio Region Using Gaofen-3 SAR Data

The Kuroshio is the strongest warm current in the western North Pacific, which plays a crucial role in climate and human activities. In terms of this, the accurate acquisition of ocean surface current velocity and direction in the Kuroshio region is of great research value. Gaofen-3 synthetic aperture radar (SAR) provides data support for the study of ocean surface current measurements in the Kuroshio region, but no relevant experimental result has been published yet. In this paper, four available stripmap mode SARs’ data acquired by Gaofen-3 in the Kuroshio region are used for measuring the ocean surface current field. In general, the Doppler centroid anomaly (DCA) estimation is a common method to infer ocean surface currents from single-antenna stripmap data, but only the radial velocity component can be retrieved. In order to measure current vectors, a novel method combining the sub-aperture processing and the least squares (LS) technology is suggested and demonstrated by applying to the Gaofen-3 SAR data processing. The experiment’s results agree well with model-derived ocean current data, indicating that the Gaofen-3 SAR has the capability to accurately retrieve the ocean surface current field in the Kuroshio region and motivate further research by providing more data.

Phytoplankton Increase Along the Kuroshio Due to the Large Meander

The Kuroshio Large Meander (LM) is known to be highly aperiodic and can last from 1 to 10 years. Since a stationary cold core formed between the Kuroshio and the southern coast of Japan off Enshu-Nada and approaching warm saltier water on the eastern side of the LM changes the local environment drastically, many commercially valuable fish species distribute differently from the non-LM period, impacting local fisheries. Despite this importance of the LM, the influences of the LM on the low trophic levels such as phytoplankton and zooplankton have still been unclear. In this study, satellite daily sea surface chlorophyll data are analyzed in relation to the LM. The results show positive anomalies of the chlorophyll-a concentration along the Kuroshio path during the LM periods, 2004–2005 and 2017–2019, from the upstream off Shikoku to the downstream (140°E). These positive anomalies are started by the triggering meander generated off south of Kyushu, which then slowly propagates to the downstream LM region in both the LM periods. Even though the detailed patterns along the Kuroshio region in the two LM periods were different, similar formations of the positive anomalies on the western side of the LM with shallower mixed layer depth are observed. Furthermore, we found clear relationships between the minimum distance from several stations along the coast to the Kuroshio axis and the mean chlorophyll-a anomaly, with significant correlations with the distance from different stations.

Characteristic Analysis of Sea Surface Currents around Taiwan Island from CODAR Observations

Sea surface currents observed by high-frequency (HF) radars have been widely used in ocean circulation research. In this study, hourly sea surface currents observed by the Taiwan Coastal Ocean Dynamics Applications Radar (CODAR) system from 2015 to 2019 were analyzed by the empirical orthogonal function (EOF) analysis to reveal the characteristics of the sea surface currents around Taiwan Island. The study area is divided into two regions, the Kuroshio region east of Taiwan Island and the Taiwan Strait west of Taiwan Island. In the Kuroshio region, the first EOF mode shows that the Kuroshio is characterized by higher current speeds with greater variability in summer. The second and third EOF modes present a dipole eddy pair and single eddy impingement on the Kuroshio during different periods. The seasonal variation of the dipole eddy pair indicates that the cyclonic/anticyclonic eddy on the north/south side appears more frequently in summer. Single eddy impingement occurs at multiple periods, including daily, intraseasonal, interseasonal, and annual periods. For the Taiwan Strait, the first EOF mode displays the tide signals. The tides enter the Taiwan Strait from the north and south, forming strong sea surface currents around the northern tip of Taiwan Island and the Penghu Archipelago. The second EOF mode exhibits the seasonal changes of the sea surface currents driven by the monsoon winds. The sea surface currents in the northern Taiwan Strait are relatively strong, possibly due to the narrow and shallow terrain there. The high spatiotemporal resolution of sea surface currents derived from CODAR observations provide more detailed characteristics of sea surface circulation around Taiwan Island.

Biomarkers in the rock outcrop of the Kazusa Group reveal palaeoenvironments of the Kuroshio region

Long-chain alkenones and n-alkanes preserved in marine and lake sediment cores are widely used to reconstruct palaeoenvironments. However, applying this technique to exposed sedimentary rock sequences is relatively challenging due to the potential for the diagenetic alteration of organic biomarkers. Here, we extract long-chain alkenones and n-alkanes from an exposed outcrop of the Kazusa Group in central Japan, one of the most continuous sedimentary successions in the world, covering almost the entire Pleistocene. We find that the alkenone unsaturation ratio and average chain length of n-alkanes appears to reflect the glacial-interglacial changes in sea surface temperature and terrestrial climate, respectively. Alkenone-based sea surface temperatures between 1.1 and 1.0 million years ago concur with foraminiferal Mg/Ca-based temperature estimates and may reflect an intrusion of the Kuroshio Current. We suggest that the preservation of these biomarkers in the Kazusa Group demonstrates its potential to provide a detailed palaeoenvironmental record.

Integrated population genomic analysis and numerical simulation to estimate larval dispersal of Acanthaster cf. solaris between Ogasawara and other Japanese regions

The estimation of larval dispersal of marine species occurring on an ecological timescale is significant for conservation. In 2018, a semi-population outbreak of crown of thorns starfish, Acanthaster cf. solaris was observed on a relatively isolated oceanic island, Ogasawara. The aim of this study was to assess whether this population outbreak was caused by large-scale larval recruitment (termed secondary outbreak) from the Kuroshio region. We estimated larval dispersal of the coral predator A. cf. solaris between the Kuroshio and Ogasawara regions using both population genomic analysis and oceanographic dispersal simulation. Population genomic analysis revealed overall genetically homogenized patterns among Ogasawara and other Japanese populations, suggesting that the origin of the populations in the two regions is the same. In contrast, a simulation of 26-year oceanographic dispersal indicated that larvae are mostly self-seeded in Ogasawara populations and have difficulty reaching Ogasawara from the Kuroshio region within one generation. However, a connectivity matrix produced by the larval dispersal simulation assuming a Markov chain indicated gradual larval dispersal migration from the Kuroshio region to Ogasawara in a stepping-stone manner over multiple years. These results suggest that, while large-scale larval dispersal from an outbreak of the Kuroshio population spreading to the Ogasawara population within one generation is unlikely. This study also highlighted the importance of using both genomic and oceanographic methods to estimate larval dispersal, which provides significant insight into larval dispersal that occurs on ecological and evolutionary timescales.

SST fronts along the Gulf Stream and Kuroshio affect the atmospheric winter climatology primarily in the absence of storms

<p>The Gulf Stream and Kuroshio regions feature strong sea surface temperature (SST) gradients that influence cyclone development and the storm track. Smoothing the SSTs in either the North Atlantic or North Pacific has been shown to yield a reduction in cyclone activity, surface heat fluxes, and precipitation, as well as a southward shift of the storm track and the upper-level jet. To what extent these changes are attributable to changes in individual cyclone behaviour, however, remains unclear. Comparing simulations with realistic and smoothed SSTs in the atmospheric general circulation model AFES, we find that the intensification of individual cyclones in the Gulf Stream or Kuroshio region is only marginally affected by reducing the SST gradient. In contrast, we observe considerable changes in the climatological mean state, with a reduced cyclone activity in the North Atlantic and North Pacific storm tracks that are also shifted equator-ward in both basins. The upper-level jet in the Atlantic also shifts equator-ward, while the jet in the Pacific strengthens in its climatological position and extends further east. Surface heat fluxes, specific humidity, and precipitation also respond strongly to the smoothing of the SST, with a considerable decrease of their mean values on the warm side of the SST front. This decrease is more pronounced in the Gulf Stream than in the Kuroshio region, due to the amplified decrease in SST along the Gulf Stream SST front.  Considering the pertinent variables occurring within different radii of cyclones in each basin over their entire lifetime, we find cyclones to play only a secondary role in explaining the mean states differences between smoothed and realistic SST experiments.</p>

Characterization of diversity and community structure of small planktonic copepods in the Kuroshio region off Japan using a metabarcoding approach

Small copepods are important prey for fish larvae in the Kuroshio region off southern Japan. However, revealing entire community structures of small copepods is difficult using conventional methods. We applied a metabarcoding method to size-fractionated community samples of epipelagic copepods (small: 0.1-0.5 mm, medium: 0.5-1.0 mm, and large: 1.0-2.0 mm). Samples were collected from 2013 to 2016 from the shoreward (Kuroshio Slope, KS) and oceanic (Kuroshio Gyre, KG) sides of the Kuroshio Current at 138° E; the results were compared with those in the center of the subtropical gyre (SG). The KS and KG sites showed both spatial differences and seasonal changes, with distinct differences between winter-spring and summer-autumn in each size-fractionated community. Water temperature markedly influenced copepod diversity and community structure, especially in the small size fraction. Warm-water species in the SG intruded into the Kuroshio regions during high-temperature periods, leading to high diversity in summer-autumn. Inter-annual environmental variations influenced by temperature and productivity were evident in KS, leading to clear changes in the sequence proportions of dominant small copepods including Paracalanus sp. and immature stages of the large copepod Calanus sinicus. Immature stages of medium/large copepods formed a substantial proportion of small-copepod communities in the Kuroshio regions (KS: 28.8%; KG: 24.7%; SG: 11.9%; based on average proportions of sequence reads). Because of their ecological importance and sensitivity to environmental changes, monitoring communities of small copepods with high taxonomic resolution may provide further insights into marine ecosystems, including fish recruitment, in the Kuroshio region.