The reader can find in the literature a lot of different techniques to study the dynamics of a given system and also, many suitable numerical integrators to compute them. Notwithstanding the recent work of [Maffione et al., 2011b] for mappings, a detailed comparison among the widespread indicators of chaos in a general system is still lacking. Such a comparison could lead to select the most efficient algorithms given a certain dynamical problem. Furthermore, in order to choose the appropriate numerical integrators to compute them, more comparative studies among numerical integrators are also needed. This work deals with both problems. We first extend the work of [Maffione et al., 2011b] for mappings to the 2D [Hénon & Heiles, 1964] potential, and compare several variational indicators of chaos: the Lyapunov Indicator (LI); the Mean Exponential Growth Factor of Nearby Orbits (MEGNO); the Smaller Alignment Index (SALI) and its generalized version, the Generalized Alignment Index (GALI); the Fast Lyapunov Indicator (FLI) and its variant, the Orthogonal Fast Lyapunov Indicator (OFLI); the Spectral Distance (D) and the Dynamical Spectra of Stretching Numbers (SSNs). We also include in the record the Relative Lyapunov Indicator (RLI), which is not a variational indicator as the others. Then, we test a numerical technique to integrate Ordinary Differential Equations (ODEs) based on the Taylor method implemented by [Jorba & Zou, 2005] (called taylor), and we compare its performance with other two well-known efficient integrators: the [Prince & Dormand, 1981] implementation of a Runge–Kutta of order 7–8 (DOPRI8) and a Bulirsch–Stöer implementation. These tests are run under two very different systems from the complexity of their equations point of view: a triaxial galactic potential model and a perturbed 3D quartic oscillator. We first show that a combination of the FLI/OFLI, the MEGNO and the GALI 2N succeeds in describing in detail most of the dynamical characteristics of a general Hamiltonian system. In the second part, we show that the precision of taylor is better than that of the other integrators tested, but it is not well suited to integrate systems of equations which include the variational ones, like in the computing of almost all the preceeding indicators of chaos. The result which induces us to draw this conclusion is that the computing times spent by taylor are far greater than the times consumed by the DOPRI8 and the Bulirsch–Stöer integrators in such cases. On the other hand, the package is very efficient when we only need to integrate the equations of motion (both in precision and speed), for instance to study the chaotic diffusion. We also notice that taylor attains a greater precision on the coordinates than either the DOPRI8 or the Bulirsch–Stöer.