Evaluation of Cotton Cultivar and At-Plant Nematicide Application on Seasonal Populations of Reniform Nematode

The reniform nematode, Rotylenchulus reniformis (Linford and Oliveira), remains a common, widespread nematode pest of cotton across the southern United States. Trials were conducted during 2017 at three non-irrigated locations: one location in Hamilton, MS, and two locations in Tchula, MS, in field settings with a history of cotton production and documented economically-damaging reniform nematode populations. Trials were designed to evaluate the response of two cotton cultivars to in-furrow nematicides consisting of aldicarb, 1,3-dichloropropene, and a non-treated control applied for nematode suppression. No significant interactions between cotton cultivar and nematicide were observed. However, treatment with 1,3-dichloropropene produced greater plant biomass, and plant height compared to aldicarb-treated cotton and the nontreated. Nematode densities were suppressed with the use of 1,3-dichloropropene compared to aldicarb and the non-treated control. The use of 1,3-dichloropropene resulted in positive early-season plant growth responses; however, these responses did not translate into greater yield.

Classification methods and identification of reniform nematode resistance in known soybean cyst nematode resistant soybean genotypes

Plant parasitic nematodes are a major yield-limiting factor of soybean in the United States and Canada. It has been indicated that soybean cyst nematode (SCN, Heterodera glycines Ichinohe) and reniform nematode (RN, Rotylenchulus reniformis Linford and Oliveira) resistance could be genetically related. For many years fragmentary data has shown this relationship. This report evaluates RN reproduction on 418 plant introductions (PIs) selected from the USDA Soybean Germplasm Collection with reported SCN resistance. The germplasm was divided into two tests of 214 PIs reported as resistant, and 204 PIs moderately resistant to SCN. The defining and reporting of RN resistance changed several times in the last 30 years, causing inconsistencies in RN resistance classification among multiple experiments. Comparison of four RN resistance classification methods was performed: (1) ≤10% as compared to the susceptible check, (2) using normalized reproduction index (RI) values, and transformed data (3) log10 (x) and (4) log10 (x+1), in an optimal univariate k-means clustering analysis. The method of transformed data log10 (x) was selected as the most accurate for classification of RN resistance. Among 418 PIs with reported SCN resistance, the log10 (x) method grouped 59 PIs (15%) as resistant, and 130 PIs (31%) as moderately resistant to RN. Genotyping of a subset of the most resistant PIs to both nematode species revealed their strong correlation with rhg1-a allele. This research identified genotypes with resistance to two nematode species and potential new sources of RN resistance that could be valuable to breeders in developing resistant cultivars.

Characterizing Repeats in Two Whole-Genome Amplification Methods in the Reniform Nematode Genome

One of the major problems in the U.S. and global cotton production is the damage caused by the reniform nematode, Rotylenchulus reniformis. Amplification of DNA from single nematodes for further molecular analysis can be challenging sometimes. In this research, two whole-genome amplification (WGA) methods were evaluated for their efficiencies in DNA amplification from a single reniform nematode. The WGA was carried out using both REPLI-g Mini and Midi kits, and the GenomePlex single cell whole-genome amplification kit. Sequence analysis produced 4 Mb and 12 Mb of genomic sequences for the reniform nematode using REPLI-g and SIGMA libraries. These sequences were assembled into 28,784 and 24,508 contigs, respectively, for REPLI-g and SIGMA libraries. The highest repeats in both libraries were of low complexity, and the lowest for the REPLI-g library were for satellites and for the SIGMA library, RTE/BOV-B. The same kind of repeats were observed for both libraries; however, the SIGMA library had four other repeat elements (Penelope (long interspersed nucleotide element (LINE)), RTE/BOV-B (LINE), PiggyBac, and Mirage/P-element/Transib), which were not seen in the REPLI-g library. DNA transposons were also found in both libraries. Both reniform nematode 18S rRNA variants (RN_VAR1 and RN_VAR2) could easily be identified in both libraries. This research has therefore demonstrated the ability of using both WGA methods, in amplification of gDNA isolated from single reniform nematodes.

Reniform nematode (Rotylenchulus reniformis) and its interactions with cotton (Gossypium hirsutum).

The reniform nematode, Rotylenchulus reniformis, is a major economic factor limiting cotton (Gossypium hirsutum) production in the USA. Across the United States cotton belt, 0.1-5.0% of the cotton crop is lost to the reniform nematode (RN) annually. This chapter discusses the economic importance, geographical distribution, host range, damage symptoms, biology and life cycle, interactions with other nematodes and pathogens, recommended integrated management, and management optimization of the reniform nematode (R. reniformis). Future research requirements are also mentioned.

EarlySeason Morphological and Physiological Responses of Resistant and Susceptible Cotton Genotypes to Reniform Nematode and Soil Nitrogen

Soil fertility and reniform nematode (RN) directly affect earlyseason growth and physiology of cotton. The growth responses to soil fertility and RN may, however, vary across germplasm. A greenhouse study was conducted to gain information on the role that host plant resistance plays in influencing RN populations, and cotton growth and physiological response to a range of soil nitrogen (N) levels in the presence and absence of RN. RN-resistant cotton lines (08SS110-NE06.OP and 08SS100) along with susceptible cultivars (Deltapine 16 and PHY 490 W3FE) were subjected to four levels of N from planting until biomass harvesting, 60 days after planting(DAP), under the presence orabsence of RN. The linear and quadratic functions (r2 = 0.72 to 0.99) bestdescribed measured responses of cotton genotypes to soil N. However, the responses were not different among genotypes, except for plant height at 30 DAP. This study revealed significant increases in several morphological parameters with increasing rates of N. RN population in the pots grown with resistant lines was lower whencompared to susceptible cultivars at biomassharvest. Physiological responses indicated that 08SS110-NE06.OP was more resilient to RN stress than other genotypes. The information from this study could be useful in managing the early season growth of cotton.

Quantitative Trait Loci Associated with Rotylenchulus reniformis Host Suitability in Soybean

Reniform nematode (Rotylenchulus reniformis) is a yield-limiting pathogen of soybean (Glycine max) in the southeastern region of the United States. A population of 250 recombinant inbred lines (RIL) (F2:8) developed from a cross between reniform nematode resistant soybean cultivar Forrest and susceptible cultivar Williams 82 was utilized to identify regions associated with host suitability. A genetic linkage map was constructed using single-nucleotide polymorphism markers generated by genotyping-by-sequencing. The phenotype was measured in the RIL population and resistance was characterized using normalized and transformed nematode reproduction indices in an optimal univariate cluster analysis. Quantitative trait loci (QTL) analysis using normalized phenotype scores identified two QTLs on each arm of chromosome 18 (rrn-1 and rrn-2). The same QTL analysis performed with log10(x) transformed phenotype data also identified two QTLs: one on chromosome 18 overlapping the same region in the other analysis (rrn-1), and one on chromosome 11 (rrn-3). While rrn-1 and rrn-3 have been reported associated with reduced reproduction of reniform nematode, this is the first report of the rrn-2 region associated with host suitability to reniform nematode. The resistant parent allele at rrn-2 showed an inverse relationship with the resistance phenotype, correlating with an increase in nematode reproduction or host suitability. Several candidate genes within these regions corresponded with host plant defense systems. Interestingly, a characteristic pathogen resistance gene with a leucine-rich repeat was discovered within rrn-2. These genetic markers can be used by soybean breeders in marker-assisted selection to develop lines with resistance to reniform nematode.